Microbial growth and antibiotics Flashcards

1
Q

What is 4 types of shape in bacteria?

A

Cocci(こかい) - spherical

Bacilli(バチリ) – rod shape

Spirilla(siフィリア) – spiral shaped

Vibrio(ビブリオ) – curved shape

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2
Q

What is examples of cocci?

A

Staphylococcus aureus

Diplococcus pneumoniae

Streptococcus pyogenes

S.thermophilus

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3
Q

What is examples of bacilli?

A

Salmonella typhi

Escherichia coil

Azotobacter

Bacillus anthracis

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4
Q

What is examples of spirilla?

A

Spirillum rubrum

Treponema pallidum

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5
Q

What is examples of vibrio?

A

Vibrio cholerae

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6
Q

What is difference between prokaryotes and eukaryotes?

A

No nucleus vs Nucleus

Circular DNA vs linear DNA

No membrane bound organelles vs Membrane bound organelles

No endoplasmic reticulum vs Endoplasmic reticulum

No golgi body vs Golgi body

No mitochondria vs Mitochondria

No organised chloroplasts vs Chloroplasts in photosynthetic cell

Mesosome vs No mesosome

70s ribosome vs 80s ribosome

1 – 10 nanometer vs 10 – 100 nanometer

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7
Q

What is structure all bacteria have?

A

Cell wall

70s ribosome

Food reverse granule

Cell surface membrane

Cytoplasm

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8
Q

What structure is sometimes present in bacteria?

A

Mesosome

Circular DNA
pili

Photosynthetic membranes

Flagellum

Capsule layer

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9
Q

What is cell wall?

A

Rigid structure for shape

Made of murein(peptidoglycan)

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10
Q

What is gram staining?

A

Classify bacteria as gram positive or negative

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11
Q

What is gram positive?

A

A cell wall is gram positive if 40% to 95% is murein

Identified by purple stain on gram staining

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12
Q

What is gram negative?

A

A cell wall is gram negative contain as little as 5% murein

Don’t retain crystal violet

Stained red if counter stain used

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13
Q

What is mesosome?

A

Infolding of cell membrane

Contain enzymes involved in respiration

Aid cell division during separation of DNA into new cell

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14
Q

What is circular DNA?

A

Contain genetic info

Has zone called nuclear zone

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15
Q

What is pili?

A

Used in reproduction

Similar to flagellum

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16
Q

What is 70s ribosome?

A

Smaller ribosome

Involved in translation at protein synthesis

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17
Q

What is photosynthetic membranes?

A

Infold membrane

Contain photosynthetic substance

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18
Q

What is food reserve granule?

A

Contains food source e.g. polysaccharides

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19
Q

What is flagellum?

A

Made of flagellin

Gives mobility

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20
Q

What is cell surface membrane?

A

Made of phospholipid bilayer and protein

Selectively permeable

Controls what in and out

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21
Q

What is capsule?

A

Mainly polysaccharides and some polypeptide

Protection against phagocytosis and antibiotics

Prevents dehydration

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22
Q

What is plasmid?

A

Pieces of DNA

Contain few genes

Beneficial effects e.g. antibiotic resistance

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23
Q

What is process of Binary fission?

A

Cell elongate, DNA replicate then attaches to mesosome

A septum synthesised to divide

Septum grow across dividing the genetic material

Cytokinesis happens

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24
Q

What is called time bacteria population require to double?

A

Generation time

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25
What is equation for binary fission?
2n n is generation
26
2 ways for cell to obtain energy?
Obtain light Oxidise chemical compound
27
What is photoautotrophs?
Use co2 in photosynthesis
28
What is photoheterotrophs?
Use organic source in photosynthesis
29
What is chemotrophic bacteria?
Obtain energy using chemical compound They break down compound leading to production of ATP
30
What is chemoautotrophic bacteria?
Obtain energy by oxidising inorganic compound
31
What is chemoheterotrophic bacteria?
Obtain energy by oxidising organic compound Most of bacteria
32
2 types of bacteria growth method in lab?
Batch culture Continuous culture
33
What is growth phases in typical growth curve?
Lag phase Log/exponential phase Stationary phase Death phase
34
What is lag phase?
No or little cell division But cell may increase in size Synthesise RNA, proteins and enzymes Nutrient specific enzymes might be produced If bacteria used to environment, it might get shorter
35
What is log phase?
Cell at maximum division rate All condition optimal for growth No limiting factor Primary metabolite formed and excreted
36
What is stationary phase?
No increase in population Limiting factor appeals Secondary metabolites which is not essential might be produced and excreted
37
What is death phase?
Unfavourable condition increase so death rate above growth rate Autolysis may often occur
38
What effect does temperature have on bacteria growth?
Low temp – slow due to low kinetic energy reducing enzymes activity on metabolism High temp – most bacteria gets destroyed as enzymes denature Extremophile may be adapted
39
What effect does pH have on bacteria growth?
Extremely high or low pH would cause denature of enzymes required for metabolism
40
What effect does O2 concentration have on bacteria growth?
Depends on microbe type If obligate aerobes high concentration is ideal If obligate anaerobes low concentration is ideal
41
List types and properties of microbes in relation to their O2 preferences?
Obligate aerobes – live only when O2 present Obligate anaerobes – live only when no O2 present Facultative anaerobes – can live in both, prefers O2 present Aerotolerant anaerobes – prefers anaerobic but can live with O2 Microaerophiles – anaerobic condition required but low O2 concentration is fine
42
Name all types of extremophiles?
Halophiles Alkalinophiles Acidophiles Barophiles(Piezophile) Thermophiles Psychrophiles
43
Halophiles?
Survive in high salt conc High conc of salt in cytoplasm preventing osmosis out of cells Optimal folding proteins tolerating high salt conc Cell wall is composed of glycoprotein and stabilised by sodium ions
44
Alkalinophiles?
Optimal in pH above 9.0(Alkali) Membrane and cell wall resist dissolution Adapted proteins Intracellural pH close to 9.0 Actively pump hydrogen ions in to use ATP synthase
45
Acidophiles?
Optimal in below pH 5.0 Acid resistant cell walls and membranes Activelly pump out excess protons
46
Barophiles
Preferably or exclusively at high hydrostatic pressure Barotorelant - high to 500 atmosphere Barophilic - requires high pressure, usually at 700, 800 atmosphere, not less than 400 atmosphere Increased pressure decrease binding capacity, so enzymes must be folded in such a way to minimise this Lipid bilayer is more tightly packed so provide more rigid structure and shields the inside ompH gene code for a protein at high pressure but inhibited at low, so enables uptake of wider range of nutrients
47
Thermophiles?
Optimum above 45 celcius If above 80 celcius is hyperthermophiles High saturated fatty acid in membrane for stability More chemical bonds to maintain protein shape Loops of polypeptide less or absent Less amino acids unstable at high temp Chaperones refold denatured proteins DNA use DNA-binding proteins and reverse DNA gyrase to introduce supercoils into DNA
48
Psychrophiles?
Optimal at 15 celcius or below Cold adapted enzymes Increase in unsaturated fatty acid as temp reduce to control membrane fluidity Antifreeze protein bind to ice ctrystal preventing piercing of membrane
49
What is 2 methods used to estimate cell number in microbal population?
Total cell count(death and living cell) Viable cell count(living cell)
50
What is haemocytometry and describe?
Total cell count Use chamber as haemocytometer Volume is 0.004mm3 Well mixed sample diluted Then counted, averaged and using dilution factor estimated
51
What is turbidimetry and describe?
Total cell count Use colorimeter Culture medium become more turbid(cloudy) as cell increase Culture is well mixed before measure Optical density measured Cannot differentiate living and death
52
Dilution plating?
Variable cell counts Dilution factor calc is done to liquid culture Done aseptically
53
Fungi properties?
Eukaryotic Some can be unicellular They are heterotrophic(use organic matter) They can be parasitic, mutualistic or saprophytic Use extracellular digestion
54
Filamentous fungi properties?
Fine, branched thread called hyphae Hyphae forms mass called mycelium
55
What is structure of fungi?
Cell wall made of chitin Same as other eukaryotes Some are coenocytic, so no cross wall between each other
56
What is name of 2 methods used for measure of fungi growth?
Increase in diameter mycelium - only on filamentous fungi Increase in dry mass - any microorganism
57
Describe how to measure increase in diameter of mycelium?
Used in filamentous fungi If effect of temperature on the growth measured: Agar plates containing identical concentration of nutrients are inoculated with the same quantity fungi Obtain equal sized pieces of mycelium, place in the centre of each plate Each plate is incubated at a different temperature in the range All other environmental conditions are standardised e.g. nutrient concentration and pH The increase in the diameter of the mycelium is measured and recorded daily These results can be plotted on a graph and the optimum temperature determined
58
Describe how to measure increase in dry mass?
Used in microorganisms If the effect of pH on the growth rate of a filamentous fungus measured: Set up flasks containing liquid broth media of the same volume and nutrient concentrations Inoculate each flask aseptically with the same mass of fungal mycelium Each culture is incubated at a different pH using buffers Ensure temperature is standardised and at the optimum At suitable time intervals, remove an identical volume of sample from each culture and determine the dry mass of fungus in pH culture. The dry mass is determined by placing the sample in an oven until all the water is removed. Dry mass at each pH can be plotted on a graph and the optimum pH for the growth of that particular fungus determined. For oven, heat at 100°C for an hour, remove and weigh it. Reheat for 15 minutes and reweigh it until you get two constant masses
59
List source of contamination in experiment?
Non-sterile apparatus Air Skin surface Work surface
60
List aseptic techniques to prevent contamination?
Use sterile syringes/pipettes/equipment Flame top of test tube/bottle/inoculating loops Minimise exposure to the air by lifting lid of dish lightly Avoiding sterile apparatus touch skin or work surface
61
How should a culture media be prepared?
Maybe solid or liquid They must contain balanced mixture of required nutrients So desired species grow
62
What is phototrophic bacteria?
Obtain energy via light during photosynthesis Light utilised by pigment e.g. bacteriochlorophyll
63
How and why should complete/Complex media be prepared and used?
Used for wide range of microorganism growth or when no exact nutrients are known It cantains all nutrients required for growth e.g. glucose, amino acids, water, salts, vitamins, trace elements
64
How and why selective/minimal media?
Suitable for growth of specific microorganism If inoculated with mixed culture, only species the medium designed for will grow Growth of others will be supressed Condition would also be for specific spicies
65
How can sterilise specific equipment?
Direct heating - Inoculating loop, neck of tubes Autoclaving - glassware, unwanted culture Burning alcohol - glass Disinfectants - inanimate objects Ultrafiltration
66
Why do we use streak pleating?
To obtain pure culture from mixed culture of bacteria
67
Streak plateing method?
Use inoculating loop to move bacteria to agar plate Lift the lid of petri dish slightly to minimise air exprosure Streak the agar plate with sample Reflame loop Re-streak sample on plate at right angle from last time Incubate the plate at 25 degrees celcius for 2 days During exam include asepctic technique and how it prevent contamination of the culture
68
What is sub-culturing?
Using aseptic technique pick and transfer a sample from a single colony onto another agar plate and incubate
69
What is bioassay?
Determines the effectiveness of a compound by seeing compound effect on growth of microorganism Also used to screen microorganism to determine for antibiotic prodcution This is by measuring their ability to inhibit the growth of bacteria on a bacteria lawn
70
What is antibiotics?
Compound produced by microorganims inhibiting or killing bacteria Can work in either in bacteriostatic or bactericidal In natural enviroment, fungus antibiotic is ecological advantage as reduce competition
71
How does bacteriostatic work?
Inhibits or prevent bacteria growth
72
How does bacteriocidal work?
Actually kill the bacteria
73
Bioassay screening method for specific fungus to specific bacteria?
Take an agar plate seeded with bacteria Place a mycelial disc from the fungus onto centre of agar Incubate the plate If the antibiotic produced by fungus is effective against bacteria then a clear zone will result Clear zone represents inhibition of growth or death of bacteria Larger the diameter, the more effective
74
What is bioassay method for semi-synthetic antibiotics or synthetic antibiotics?
Take an agar plate seeded with the test bacterium Then place a standard volume of antibiotic into a standard sized well or use standard sized paper discs with antibiotic Incubate at 25 degree celcius for 48 hours A clear zone will be produced if the antibiotic is effective against the bacteria
75
What is disinfectant?
Chemical compounds that kill bacteria, e.g. Lysol, Dettol It is possible to determine the effectiveness of a disinfectant by using bioassay
76
What is antibiotics?
Chemical substances produced by microorganisms or synthetically It inhibit the growth of or kill other microorganisms Usually bacteria but few are effective against fungi They are ineffective against viruses
77
4 ways antibiotics work?
Inhibiting cell wall synthesis Cell membrane disruption Inhibiting mRNA translation Inhibiting nucleic acid synthesis
78
What antibiotic inhibits cell wall syntheis and how?
Penicillins and Ampicillin Inhibits enzymes involved in the syntheis of peptide cross links in the cell wall, causing it to weaken So burst as osmotic lysis happens
79
What antibiotic disrupts cell membrane and how?
Polymyxin B Alters cell membrane structure making it more permeable and leading to cell death
80
What antibiotic inhibits mRNA translation and how?
Streptomycin and tetracyclines Inhibit protein syntheis by biding across ribosomes but not on eukaryotic cell
81
What antibitoc inhibits nucleic acid syntheis and how?
Ciprofloxacin Inhibits DNA replication
82
What is broad spectrum antibiotics?
Effective against a wide range of bacteria May be initially used in the treatment of undetermined bacterial infections e.g. Tetracyclines
83
What is narrow spectrum antibiotics?
Effective against a small specific group of bacteria e.g. Streptomycin is used to treat infections caused by streptococcus bacteria Some antibiotics produce allergic effects in certain individuals
84
Give examples of antibiotic resistance?
Penicillin resistance occurs as bacteria gets genetic mutation to produce enzymes penicillinase and breaks down penicillin Mutation in change of biding site of antibitic
85
How can bacteria gain antibiotic resistance?
Spontaneous mutation Transfer of genes for resistance from other bacteria
86
What is 2 ways of gene transmission?
Vertical and horizontal
87
How does vertical gene transmission happens?
Resistance to antibiotics may arise due to a random mutation Bacteria with resistance gene survive when exposed to the antibiotic Bacteria reproduce and pass resistance gene on to future generations Repeated exposure to antibiotics (particularly when dosages of antibiotic are not correctly administered or if the patient does not complete the full course of antibiotic) leads to more bacteria surviving and passing on the gene Antibiotic resistant bacteria increase in the population lead to an increase in the frequency of the allele for antibiotic resistance
88
How does horizontal gene transmission happen?
Antibiotic resistance gene are usually on plasmid, and plasmid can contain more than one antibitic resitance gene The donor cell produces a conjugation tube (pilus) which connects the two bacterial cells Horizontal gene transmission happens by conjugation Donor cell replicates its plasmid and passes the copy of the plasmid to the other bacterium The recipient cell receives the plasmid which may contain a gene for antibiotic resistance
89
What is transduction
Can pass DNA of one bacteria to other bacteria Bacteriophage insert its DNA to bacteria Bacteriophage DNA replicates and host DNA splits into bacteriophage size New bacteriophages made, some with original bacteriophage DNA some with bacteria DNA Bacteriophage with bacterial DNA attacks another bacteria Bacteria gains other bacteria DNA
90
What is transformation?
DNA drom a lysed bacteria cell is bound to DNA binding protein in the host cell wall One DNA strands enters host cell as other strand is broken down The single strand of DNA is bound to the DNA of host cell
91
Antibiotic resistance of tuberculosis?
Strain of bacterium Mycobacterium tuberculosis has resistance to different antibiotics due to mutation Icomplete a course of antibiotic treatment enabled to survive and exchange their genes with other bacteria via horizontal gene transmission So multiple-antibiotic-resistant strains of TB developed So a cocktail of antibiotics is often used to treat TB Scientists are trying to develop more effective antibiotics to treat TB and other bacterial infections
92
Antibiotics resistance of MRSA?
MRSA (methicillin-resistant Staphylococcus aureus) is the name of any strain of the Staphylococcus aureus that is resistant to antibiotics MRSA is difficult to treat and is prevalent in hospitals as: Many antibiotics being used - enabling multiple-resistance to develop Close proximity of patients - ideal for transmission of infections Weak and sick individuals - more vulnerable to infection by MRSA.
93
How is C.difficile infection happening?
When antibiotics is used in patients it decrease competition in body and increase and release toxin(Opportunistic bacteria)
94
What is sympthoms of C.difficile infection?
Mild to severe diarrhea Severe inflammation of the bowel
95
Who is at risk in C.difficile infection?
People treated with broad spectrum antibiotics People with serious underlying illnesses Elderly
96
How is C.difficile spread?
Hands of healthcare and other people in contact with patients or their enviromental surfaces contaminated with bacteria or spores Spores are produced when bacteria encountered with unfavolable condition They survive on clothes and surfaces for long period even when cleaned with alcohol
97
What is treatment of C.difficile?
the use of specific antibiotics which will kill C. difficile (e.g. either metronidazole or vancomycin) Probiotic supplements which are designed to stimulate the growth of ‘good’ bacteria (although the evidence of their effectiveness in treating CDIs is inconclusive) Injections of immunoglobulins to enhance the production of antibodies available to fight off the infection Fecal transplantation – this treatment involves transplantation of a fecal sample from a healthy donor Serious infection may require surgery to remove a damaged section of the bowel.