Microbial Genetics Flashcards
Manifestation of the genotype; actual expressed properties.
Phenotype
Genetic makeup of an organism.
Genotype
The science of heredity; includes the study of what genes are, how they are replicated, how they are passed between generations/organisms.
Genetics
Genetic information in a cell (includes it’s chromosomes and plasmids).
Genome
Structures containing DNA that physically carry hereditary information.
Contains the genes.
Chromosomes
Segments of DNA (in some viruses - RNA) that code for functional products.
Genes
Repeating macromolecule units composing DNA; consists of a nucleobase (adenine, thymine, cystosine, guanine), deoxyribose (pentose sugar), and a phosphate group.
Each strand of the double helix has string of alternating sugar & phosphate groups with a nitrogenous base attached to a sugar.
Nucleotides
Nitrogenous bases held together by H bonds.
Base pairs
Set of rules that determines how a nucleotide sequence is converted into the amino acid sequence of a protein.
Genetic code
The resulting molecule produced from gene code.
Expression
Collection of genes.
Genotype
Collection of proteins.
Phenotype
Twisted DNA
Supercoiled
Number of base pairs in DNA of E. coli.
4.6 million
Length of DNA of one E. coli cell
1mm (1000 times longer than entire cell)
Repeating sequences of two- to five-base sequences; used in DNA fingerprinting.
Short tandem repeats (STRs)
Regions of DNA that are likely to encode a protein; base sequences between start and stop codons.
Open-reading frames.
The sequencing and molecular characterization of genomes.
Genomics
Blueprint for a cell’s proteins.
DNA
Genetic information transferred between generations of cells.
Replication
Genetic information transferred between cells of same generation.
Recombination
Genetic information used within a cell to produce the proteins needed for the cell to function.
Expression
The enzyme that relaxes the supercoiling when replication begins.
Topoisomerase or gyrase
Enzyme that unwindsdouble-stranded DNA.
Helicase
Enzyme that synthesizes DNA; proofreads and repairs DNA.
DNA Polymerase
The point at which replication occurs:
Replication fork
Each new double-stranded DNA molecule contains one original (conserved) strand and one new strand:
Semiconservative replication
Relaxes supercoiling ahead of the replication fork.
DNA Gyrase
Makes covalent bonds to join DNA strands; joins Okazaki fragments and new segments in excision repair.
(Bonds between phosphates and sugars)
DNA Ligase
Cut DNA backbone in a strand of DNA; facilitate repair and insertions.
Endonucleases
Cut DNA from an exposed end of DNA; facilitate repair.
Exonucleases
Adds methyl group to selected bases in newly made DNA.
Methylase
Uses visible light energy to separate UV-induced pyrimidine dimers.
Photolyase
RNA enzyme that removes introns and splices exons together.
Ribozyme
Copies RNA from a DNA template.
RNA Polymerase
An RNA polymerase that makes RNA primers from a DNA template.
RNA Primase
RNA-protein complex that removes introns and splices exons together.
snRNP
Relaxes supercoiling ahead of the replication fork; separates DNA circles at the end of DNA replication.
Topoisomerase
Cuts DNA backbone, leaving single-stranded “sticky ends.”
Transposase
Which end can DNA polymerases add new nucteotidesto?
3’
What is attached to the 3’ end of the DNA strand?
Hydroxyl
What is attached to the 5’ end of the DNA strand?
Phosphate
Where is the great deal of energy required for DNA replication supplied from?
Nucleotides (which are actually nucleoside triphosphates)
What is the only difference between ATP and the adenine nucleotide in DNA?
The sugar component
What is the sugar in the nucleoside used to synthesize DNA?
Deoxyribose
How many phosphate groups are removed to add the nucleotide to a growing strand of DNA?
Two
Process that is exergonic and provides energy to make the new bonds in the DNA strand.
Hydrolysis
Eukaryotic chromosomes are linear whereas prokaryotic chromosomes are ________.
Circular
Movement of the two replication forks in opposite directions away from the origin of replication.
Bidirectional
The separation of the two loops in a prokaryotic chromosome must be separated by ___________.
Topoisomerase
The rate of mistakes in DNA replication.
1 in every 10 to the 10th power bases incorporated.
Enzyme responsible for high accuracy due to the proofreading capability is:
DNA Polymerase
The three “STOP” codons:
UAA, UAG, UGA
Start codon:
AUG
Process where genetic information is copied, or transcribed, into a complementary base sequence of RNA:
Transcription
Information encoded in RNA used to synthesize specific proteins.
Translation
Synthesis of a complementary strand of RNA from a DNA template.
Transcription
The cellular machinery for protein synthesis; forms an integral part of ribosomes.
Ribosomal RNA (rRNA)
RNA that carries the coded information for making specific proteins from DNA to ribosomes, where proteins are synthesized.
Messenger RNA (mRNA)
A strand of mRNA is synthesized using a specific portion of the cell’s DNA as a template during:
Transcription
The process of transcription requires both:
RNA Polymerase and a supply of RNA nucleotides
Transcription begins when RNA polymerase binds to the DNA at a site called the:
Promoter
DNA and RNA are synthesized in the direction:
5’—->3’
RNA synthesis continues until RNA polymerase reaches a site on the DNA called the :
Terminator
The nitrogenous base that is an analog of thymine and plays well (doesn’t bond too much like thymine) in RNA:
Uracil
Code redundancy is useful for:
Silent mutation
Each codon codes for one amino acid; in contrast:
Each amino acid is coded by more than one codon.
We have the same evolutionary ancestors as bacteria. Our genetic code always starts with:
AUG (Methionine)
Protein synthesis
Translation
Decoding the “language” of nucleic acids and converting that information into the “language” of proteins.
Translation
Groups of three nucleotides.
Codons
Written in terms of their base sequence in mRNA.
Codons
Total number of amino acids.
20
Number of possible codons.
64
Most amino acids are signaled by several alternative codons:
Allows for certain amount of change, or mutation, in the DNA without affecting the protein ultimately produced.
Degeneracy of the code
Codons that code for amino acids (61).
Sense codons
Codons that do not code for amino acids (3).
Nonsense codons (stop codons)
Site of translation
ribosome
Type of RNA molectules that recognize the specific codons and transport the required amino acids
Transfer RNA (tRNA)
Process of translation (8 steps):
Components needed to begin translation come together.
Step 1 (Process of translation)
Process of translation (8 steps):
On the assembled ribosome, a tRNA carrying the first amino acid is paired with the start codon on the mRNA. The place where this first tRNA sits is called the P site. A tRNA carrying the second amino acid approaches.
Step 2 (Process of translation)
Process of translation (8 steps):
The second codon of the mRNA pairs with a tRNA carrying the second amino acid at the A site. The first amino acid joins to the second by a peptide bond. This attaches the poypeptide to the tRNA in the P site.
Step 3 (Process of translation)
Process of translation (8 steps):
The ribosome moves along the mRNA until the second tRNA is in the P site. The next codon to be translated is brought into the A site. The first tRNA now occupies the E site.
Step 4 (Process of translation)
Process of translation (8 steps):
The second amino acid joins to the third by another peptide bond, and the first tRNA is released from the E site.
Step 5 (Process of translation)
Process of translation (8 steps):
The ribosome continues to move along the mRNA and new amino acids are added to the polypeptide.
Step 6 (Process of translation)
Process of translation (8 steps):
When the ribosome reaches a stop codon, the polypeptide is released.
Step 7 (Process of translation)
Process of translation (8 steps):
Finally, the last tRNA is released, and the ribosome comes apart. The released polypeptide forms a new protein.
Step 8 (Process of translation)
Three parts of translation:
1) Chain initiation
2) Chain elongation
3) Chain termination
(ESSAY QUESTION!!!)
Sequence of three bases that is complementary to a codon
anticodon
In prokaryotic cells, the translation of mRNA into protein can begin even before transcription is complete. This is due to :
mRNA is produced in the cytoplasm; the start codons of an mRNA being transcribed are available to ribosomes before the entire mRNA molecule is even made.
In eukaryotic cells, transcription takes place in the:
Nucleus
Regions of expressed DNA.
Exons
Intervening regions of DNA that do not encode protein.
Introns
Particles that remove the introns and splice the exons together.
small nuclear ribonucleoproteins, or snRNPs (snurps)
In some organisms, the introns act as ________to catalyze their own removal.
Ribozymes
In the nucleus, __________ synthesizes a molecule called an RNA transcript that contains copies of the introns.
RNA polymerase
Many genes, perhaps 60-80%, are not regulated but are instead ______________, meaning that their products are constantly produced at a fixed rate.
Constitutive
Example of constitutive genes:
Enzymes of glycolysis
Protozoan parasite that causes African sleeping sickness
Trypanosoma
The two genetic control mechanisms (pre-transcriptional control)
Repression and Induction