Microbial Genetics Flashcards
- basic unit of heredity
- segments of DNA (RNA for some
viruses) that code for functional
products (proteins, RNAs) - DNA sequences that are required to
produce a polypeptide chain
Gene
- regions of DNA that contain the actual
instructions for the sequence of amino
acids in a protein (coding regions) - stretches of DNA sequence that help
regulate expression of gene (noncoding
regions)
Polypeptide chain
macromolecule composed of repeating units called nucleotides
DNA
nitrogenous base + deoxyribose + phosphate group ( the 3 components)
Nucleotide
- string of nucleotides
joined together by
phosphodiester linkages - macromolecule
- deoxyribonucleoside 5-
monophosphate
Molecular Structure of DNA: Primary Structure
- three-dimensional
configuration of DNA - double helical structure
- two polynucleotide
strands wound around
each other
Molecular Structure of DNA: Secondary Structure
DNA Model: two long polynucleotide chains are coiled around a central
axis, forming a right-handed _____________
double helix
Two chains of DNA Model are _____________
antiparallel (C-5’-to-C-3’ orientation runs in opposite directions)
base of both chains are paired to one another as the result of the formation of hydrogen bonds
specificity and complementarity (A=T, C=G)
Molecular forces that hold two strands together:
▪ Hydrogen bond
▪ hydrophobic interactions between stacked base pairs
▪ found in cytoplasm
▪ circular chromosome
▪ single chromosome plus plasmid
▪ made up of only DNA
▪ copies its chromosomes and divides immediately
Prokaryotic Chromosome
▪ found in nucleus
▪ linear chromosome
▪ many chromosomes, usually 10-50 chromosomes in somatic cells
▪ made up of DNA, histone proteins
▪ copies its chromosome grows cell and then divides equally through mitosis
Eukaryotic Chromosome
Bacteria have a ___________________ consisting of a single circular molecule of DNA with associated proteins
single circular chromosome
The chromosome is _________________________ and attached at one or several points to the plasma membrane.
Looped and folded
The chromosome takes up only about 10% of the cell’s volume because the ________________
DNA is twisted, or supercoiled
Model of E. coli Chromosome
Folded = coiled
Nicked = single strand
Chromosome length of E.coli
~1 mm
individual unit of replication
replicon
where replication starts and continues until entire replicon has been replicated
origin of replication
loop where replication occurs
replication bubble
point of unwinding, where two single nucleotide
strands separate from the double-stranded DNA helix
replication fork
DNA Replication Takes Place in a
_________________ Manner
Semiconservative
❑ intragenic regions
❑ intervening
nucleotide
sequences that do
not directly code for
proteins and are
removed in pre-mRNA
Introns
portions of gene that codes for amino acids
Exons
Three staged of Prokaryotic Translation
Initiation, Elongation, Termination
binding of ribosome (containing rRNAs and proteins) and aminoacyl tRNA to mRNA.
Initiation
addition of one aa at a time to the growing polypeptide chain
Elongation
release of finished polypeptide from tRNA and dissociation of ribosome from mRNA
Termination
determines how the nucleotide sequence specifies the amino acid
sequence of a protein
Genetic code
three nucleotides encode each amino acid in a protein
triplet code
❑ basic unit of the genetic code
❑ set of bases that encode a single amino acid
❑ contains three nucleotides
codon
three stop codons:
UAA, UAG, UGA
is written in a linear form, using the ribonucleotide bases that compose mRNA molecules as “letters”
Genetic code
is derived from the complementary nucleotide bases in DNA.
Ribonucleotide sequence
prokaryotic mRNA can be _____________
polycistronic
can produce more than one protein
polycistronic
eukaryotic mRNA are usually _________________
monocistronic
each can encode only a single polypeptide
monocistronic
Pre Transcriptional Controls
Repression and Induction
❑ Two genetic control mechanisms that regulate the transcription of mRNA, and consequently, the synthesis of enzymes from them.
❑ These mechanisms control the formation and amounts of enzymes in the cell, not the activities of the enzymes.
Repression and Induction
The regulatory mechanism that inhibits gene expression and decreases the synthesis of enzymes.
Repression
the process that turns on the transcription of a gene or genes
Induction
a substance that initiates transcription of a gene
Inducer
enzymes that are synthesized in the presence of inducers
Inducible enzymes
Example of an inducible system:
genes required for lactose metabolism in E. coli
True or False: The default position of a repressible gene is off.
False: on
True or False: The default position of an inducible gene is on.
False: off
the bacterial cells can produce a large quantity of the enzyme when ______________ is added to the medium
lactose
the presence of ___________ indirectly induces the cells to synthesize more enzyme
lactose
Pre-Transcriptional Controls
Positive and Negative controls
❑ processes that stimulate gene expression
❑ regulatory protein is an activator
Positive control
❑ processes that inhibit gene expression
❑ regulatory protein is a repressor
Negative control
Formulated the operon control of gene expression by induction and repression:
Francois Jacob and Jacques Monod (1960s)
The model shows induction of the enzymes of lactose catabolism in E. coli
Operon model
❑ bacterial genes that have related functions are clustered together
❑ bacterial genes that have related functions are under the control of a
single promoter
❑ often transcribed together into a single mRNA
OPERON
❑ group of bacterial structural genes that are transcribed
together (with their promoter and additional sequences that
control transcription)
➢ basic unit of transcriptional control in bacteria
OPERON
Two relatively short segments of DNA in lac operon:
Promoter, Operator
is the segment where RNA polymerase initiates transcription
Promoter
acts as a go or stop signal for transcription of the structural genes
Operator
the combination of the three lac structural genes and the adjoining control regions is called _______________
LAC OPERON
OPERON STRUCTURE:
Structural genes, Promoter, Regulator Gene, Regulator protein
transcribed into a single mRNA, which is
translated to produce enzymes (transcription is under the control of a promoter)
structural genes
where RNA polymerase binds to and moves
downstream, transcribing the structural genes
promoter
helps control transcription of the structural genes
of the operon (not part of the operon, has its own promoter and is transcribed into short mRNA and translated into small protein or regulator protein)
regulator gene
bind to a region of DNA operator and affect
whether transcription can take place
regulator protein
The Operon Model of Gene Expression
LAC PERMEASE, TRANSACETYLASE, STRUCTURAL GENES
is involved in the transport of lactose into the cell
LAC PERMEASE
metabolizes certain disaccharides other than lactose
TRANSACETYLASE
the genes, which determine the structures of proteins
STRUCTURAL GENES
LAC Operon Enzymes:
Permease, β-galactosidase, Thiogalactoside transacetylase
❑ actively transports lactose into the cell
❑ encoded by lacZ gene
Permease
❑ breaks lactose into glucose and galactose; can convert lactose to allolactose (has a role in regulating lactose metabolism)
❑ encoded by lacY gene
β-galactosidase
❑ unknown function
❑ encoded by lacA gene
thiogalactoside transacetylase
❑ regulator gene
❑ transcribed into a short mRNA and translated into a repressor/inhibitor
❑ consist of four identical polypeptides
❑ has two binding sites
❑ one site binds to allolactose
❑ other site binds to DNA
lacI
a regulatory gene that encodes a repressor protein that switches inducible and repressible operons on or off
I gene
true or false: the lac operon is an inducible operon
True
true or false: in the presence of lactose, the repressor binds to the operator site, thus preventing transcription
False: absence of lactose
true or false: If lactose is present, the repressor binds to a metabolite of lactose instead of to the operator, and lactose-digesting enzymes are transcribed.
true
❑ those in which transcription is normally off (not taking place)
❑ something must happen to induce transcription or turn it on
inducible operons
❑ those in which transcription is normally on (taking place)
❑ something must happen to repress transcription or turn it off
repressible operons
When excess tryptophan is present, the tryptophan acts as a ________________ binding to the repressor protein. The repressor protein can
now bind to the operator, stopping further tryptophan synthesis.
Corepressor
negative repressible operon
TRP Operon
negative repressible operon
TRP Operon
a substance derived from ATP that serves as a cellular alarm signal.
cAMP
Enzymes that metabolize glucose are constitutive, and cells grow at their maximal rate with ____________ as their carbon source because they can use it most efficiently.
glucose
transcription of the lac operon requires both the presence of ___________ and the absence of _____________
lactose, glucose
transcription of the lac operon requires both the presence of ___________ and the absence of _____________
lactose, glucose
is an example of an alarmone, a chemical alarm signal that promotes a cell’s response to environmental or nutritional stress. (The stress is the lack of glucose)
Cyclic AMP
inhibition of the metabolism of alternative carbon sources by glucose is termed
catabolite repression or the glucose effect
Eukaryotic and bacterial cells can turn genes off by ______________ certain nucleotides—that is, by adding a methyl group 1-CH3 2.
methylating