Microbial Diversity and Pathogenesis Flashcards

1
Q

How do microbes avoid soluble immunity factors?

A
  1. Avoid complement fixation
  2. Destroy Ab
  3. Avoid eliciting/detection by Ab
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2
Q

How is Toxoplasmosis diagnosed?

A
  • Serology (ELISA for anti-toxiplasma serum antibodies) - blood test
  • PCR
  • Histology (detection of tissue cysts) or gross pathology (retina)
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3
Q

Define

Merozoites

A

a small amoeboid sporozoan trophozoite (as of a malaria parasite) produced by schizogony that is capable of initiating a new sexual or asexual cycle of development

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4
Q

True or False:

Normal flora can become pathogenic

A

True

These are termed opportunistic pathogens

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5
Q

Definition

lacking a cell nucleus

A

Anucleate cells

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6
Q

True or False:

Toxoplasma infect phagocytes by being phagocytosed

A

False

The invade the phagocytes

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7
Q

Definition

an infection caused by pathogens (bacteria, viruses, fungi, or protozoa) that take advantage of an opportunity not normally available, such as a host with a weakened immune system, an altered microbiota (such as a disrupted gut microbiota), or breached integumentary barriers

A

Opportunistic pathogens

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8
Q

Define

Phage therapy

A

the therapeutic use of bacteriophages to treat pathogenic bacterial infections

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9
Q

Definition

symbiosis which is beneficial to both organisms involved

A

Mutualism

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10
Q

What are human mycoses caused by?

A

True fungal pathogens and opportunistic pathogens

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11
Q

What are the differences between prokaryotes and eukaryotes?

A
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12
Q

What causes Giardiasis?

A
  • G. intestinalis*
  • G. lamblia*
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13
Q

Definition

the cells and tissues of a host that support growth of a particular virus or bacterium

A

Tissue tropism

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14
Q

Define

E. coli

A

a bacterium commonly found in the intestines of humans and other animals, some strains of which can cause severe food poisoning

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15
Q

Definition

DNA sequences that can move around the genome, changing their number of copies or simply changing their location, often affecting the activity of nearby genes

A

Mobile genetic element

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16
Q

Define

Anucleate cells

A

lacking a cell nucleus

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17
Q

Define

16S rRNA

A

the component of the 30S small subunit of a prokaryotic ribosome that binds to the Shine-Dalgarno sequence

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18
Q

What is the normal flora of the lower respiratory tract?

A

It does not usually have microbiota

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19
Q

Definition

molecules shared by groups of related microbes that are essential for the survival of those organisms and are not found associated with mammalian cells

A

PAMPs

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20
Q

What is the bulk of the cell wall comprised of in Acid-fast bacteria?

A

Unique types of lipids such as mycolic acid

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21
Q

Definition

starting from the beginning

A

De novo

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22
Q

The relationship between the normal flora and the host is:

Select one:

a. mutualistic and parasitic
b. symbiotic
c. paratism and commensalism
d. commensalism and mutalism

A

The relationship between the normal flora and the host is:

Select one:

a. mutualistic and parasitic
b. symbiotic
c. paratism and commensalism

d. commensalism and mutalism

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23
Q

What does viral protain VP16 do in class 1 viruses?

A

Stimulates cellular reverse transcriptase to transcribe IE genes

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24
Q

How do viruses lyse cells?

A

Viroporins - hydrophobic proteins, interact with and disrupt membranes

Picornaviruses - VP2

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25
Which section of the IgA molecule does IgA protease cleave?
The hinge region
26
# Definition recovering from an illness or medical treatment
Convalescent
27
# Define Resident flora
The microorganisms that usually occupy a particular body site
28
# Definition a compound present in the walls of Gram-positive bacteria. It is a polymer of ribitol or glycerol phosphate
Teichoic acid
29
# Define Adhesins –
cell-surface components or appendages of bacteria that facilitate adhesion or adherence to other cells or to surfaces, usually the host they are infecting or living in
30
What is unique to *Mycoplamataceae* bacteria?
They completely lack a cell wall
31
# Definition any of a group of spore-producing organisms feeding on organic matter, including moulds, yeast, mushrooms, and toadstools
Fungi
32
# Definition a common bacterium that lives on the skin or in the nose and in most situations it is harmless. However, if it enters the body through a cut in the skin, it can cause a range of mild to severe infections, which may cause death in some cases. Also known as S. aureus
Golden staph
33
# Define Invasins
Any of a class of proteins associated with the penetration of bacteria into mammalian cells
34
# Definition a carbohydrate-enriched coating that covers the outside of many eukaryotic cells and prokaryotic cells, particularly bacteria
Glycocalyx
35
Describe spherical viruses
Icosahedral ordered symmetry Formed by repeating units of protein A regular polyhedron with 20 triangular faces
36
# Define Operon
a unit made up of linked genes which is thought to regulate other genes responsible for protein synthesis
37
# Definition an organism consisting of a cell or cells in which the genetic material is DNA in the form of chromosomes contained within a distinct nucleus. They include all living organisms other than the eubacteria and archaea
Eukaryotes
38
# Definition a supergroup of protists that are defined by an asymmetrical appearance with a feeding groove that is “excavated” from one side; it includes various types of organisms which are parasitic, photosynthetic and heterotrophic predators
Excavata
39
# Define A-B toxins –
two-component protein complexes secreted by a number of pathogenic bacteria. They can be classified as Type III toxins because they interfere with internal cell function
40
What stimulates transcription of early genes in class 1 viruses?
IE gene proteins
41
What makes up most of the cell wall of a Gram-positive bacteria?
Peptidoglycan
42
# Definition a major constituent of the cell wall of gram-positive bacteria
Lipoteichoic acid
43
What is the step-wise gene expression of viruses?
Immediate early Early Late (Assembly and egress)
44
# Definition the capsid of a virus with the enclosed nucleic acid
Nucleocapsid
45
What is the ideal media to grow bacteria from the respiratory tract?
Horse blood agar
46
# Definition a microscopic parasite that causes the diarrheal illness known as giardiasis
Giardia
47
True or False: *Candida albicans* can form biofilms
True
48
How is *Toxoplasmosis* transmitted?
Ingestion of raw/undercooked cyst-infected meat Contaminated drinking water Ingestion of raw/undercooked vegetables Ingestion of cat feces
49
Describe the pathogenesis of Giardiasis
* Cysts undergo developmental change in duodenum and form trophozoites * Trophozoites attach to duodenal epithelial cells via a sucking disk * Feed on mucosal secretions and grow and multiply, interfering with intestinal absorption
50
# Define Transcytosis
a type of transcellular transport in which various macromolecules are transported across the interior of a cell
51
# Definition a blood protein produced in response to and counteracting a specific antigen. They combine chemically with substances which the body recognizes as alien, such as bacteria, viruses, and foreign substances in the blood
Antibodies (Ab) –
52
Bacterial siderophores: Select one: a. Act as receptors for nitrogen-binding host proteins b. Are high molecular weight membrane proteins c. Allow the normal flora to out-compete pathogens d. Are used to chelate iron in the environment
Bacterial siderophores: Select one: a. Act as receptors for nitrogen-binding host proteins b. Are high molecular weight membrane proteins c. Allow the normal flora to out-compete pathogens **d. Are used to chelate iron in the environment**
53
Eukaryotes Select one: a. Carry out all it’s functions through the cytoplasmic membrane b. Have a membrane delimited nucleus c. are only bacteria d. mycolic acid on the cell wall
Eukaryotes Select one: a. Carry out all it’s functions through the cytoplasmic membrane **b. Have a membrane delimited nucleus** c. are only bacteria d. mycolic acid on the cell wall
54
# Definition a protein released by animal cells, usually in response to the entry of a virus, which has the property of inhibiting virus replication.
Interferon
55
True or False: The vast majority of DNA sequences in human blood are viral
True
56
# Definition a type of transmission that occurs when bacteria or viruses travel on dust particles or on small respiratory droplets that may become aerosolized when people sneeze, cough, laugh, or exhale
Airborne transmission
57
# Definition a differential stain used to identify acid-fast organisms such as members of the genus Mycobacterium
Acid-fast stain
58
# Definition infection with candida, especially as causing oral or vaginal thrush
Candidiasis
59
Adhesion is mediated by which structures?
* Pili/fibriae * Afibrial adhesins * Bacterial capsules
60
# Definition the most common bacterial cytotoxic proteins and are required for virulence in a large number of important pathogens that generally disrupt host cell membranes, but they can have additional effects independent of pore formation
Pore-forming toxins
61
How can Toxoplasmosis be prevented?
* Wear gloves when gardening, carefull cleaning of cat litter trays especially if you are pregnant (or thinking about it) * Wash hads properly * Cook all meat thoroughly * Wash (and peel) your veggies (selected countries) * Clean surfaces and kitchen utensils to prevent cross-contamination
62
# Define Transient flora
Microbes inhabiting a body surface or cavity for a brief period of time, usually as a result of their promotion and selection by antibiotic therapy, chemotherapy, hospitalization, illness, or surgery
63
# Definition a thin but robust layer of mucilage adhering to a solid surface and containing a community of bacteria and other microorganisms
Biofilms
64
# Definition infections that have been caught in a hospital and are potentially caused by organisms that are resistant to antibiotics
Noscomial infections
65
# Define Asymptomatic carrier
a person or other organism that has become infected with a pathogen, but that displays no signs or symptoms
66
What are the three main vectors for horizontal gene transfer?
Plasmids Bacteriophages Transposons
67
# Definition a gene that protects a cell from one step on the path to cancer
Tumour-supressor gene
68
What is the name of a parasitic organism that lives within the host?
Endoparasite
69
# Define Bacteriocins
a protein produced by bacteria of one strain and active against those of a closely related strain
70
What happens in cerebral malaria?
The infected RBCs obstruct the blood vessels in the brain
71
# Define Gram positive
bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their cell wall.
72
# Define De novo
starting from the beginning
73
# Definition the transmission of pathogens through vehicles such as water, food, and air
Vehicle transmission
74
# Definition the type of ribosome found in bacteria and archaea that are comprised of a small 30S subunit and large 50S subunit
70S ribosome
75
# Define Antibodies (Ab) –
a blood protein produced in response to and counteracting a specific antigen. They combine chemically with substances which the body recognizes as alien, such as bacteria, viruses, and foreign substances in the blood
76
What are the three protein exotoxins?
Membrane-disrupting toxins A-B toxins Superantigens
77
What is considered the 5th Koch's postulate?
Effective therapeutic or preventative measure(s) should eliminate disease
78
How is cryptosporidium prevented?
* Exclude people with Cryptosporidium infection from childcare, preschool, school and work until there has been no diarrhea for 24 hours * People who have diarrhea should not use swimming pools or spas for 14 days after the symptoms have stopped * Pasterurisation and boiling as control measures * Wash hands
79
# Define Virulence factor
Factor(s) required by the microorganism that enable it to cause disease
80
How can bacteria inhibit the phagolysosome?
* Block fusion to lysosomes * Lyse phagosomal membrane * Block/be resistant to acidification * Block assemblt of NADPH oxidase
81
# Define Incubatory
the period between exposure to an infection and the appearance of the first symptoms
82
True or False: Fungi can produce spores through both sexual or asexual life cycles
True
83
# Define Toxoplasmosis
a disease caused by toxoplasmas, transmitted chiefly through undercooked meat, soil, or in cat faeces. Symptoms of infection generally pass unremarked in adults, but can be dangerous to unborn children.
84
# Definition A chain of easily disrupted fungal cells that is intermediate between a chain of budding cells and a true hypha, marked by constrictions rather than septa at the junctions
Elogate pseudohyphae
85
What are the two major parts of the LPS later?
Lipid A O-specific polysaccharide side chain (O antigen)
86
Cryptosporidium oocysts are resistant to what and susceptible to what?
Resistant to chlorination but are killed by conventional cooking or boiling
87
# Define Trophozoites
a growing stage in the life cycle of some sporozoan parasites, when they are absorbing nutrients from the host
88
What are the common nematode parasites that infect humans?
Roundworms Hookworms Pin or threadworms
89
Which areas do bacteria colonise that have poor access for antibodies?
Inside cells Epidermis CNS Gall bladder Cysts
90
What do endospores contain?
DNA, ribosomes and large amounts of dipicolinic acid in the core (aids dormancy)
91
# Define Macrophages
a large phagocytic cell found in stationary form in the tissues or as a mobile white blood cell, especially at sites of infection
92
Most fungal pathogens of humans are opportunistic, which means that: Select one: a. They infect a host at first contact b. They need to switch morphology c. They mostly infect immunosuppressed subjects d. They require a specific infection route
Most fungal pathogens of humans are opportunistic, which means that: Select one: a. They infect a host at first contact b. They need to switch morphology **c. They mostly infect immunosuppressed subjects** d. They require a specific infection route
93
How is Cryptosporidium transmitted?
From animal reservoirs in contaminated food or water (manu birds and mammal shed oocysts in feces)
94
# Definition a type of transcellular transport in which various macromolecules are transported across the interior of a cell
Transcytosis
95
# Definition an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation or anaerobic respiration if oxygen is absent
Faculative anaerobes
96
# Define Archaea
microorganisms which are similar to bacteria in size and simplicity of structure but radically different in molecular organization. They are now believed to constitute an ancient group which is intermediate between the bacteria and eukaryotes
97
# Definition any unicellular fungus that reproduces vegetatively by budding or fission, including forms such as candida that can cause disease
Yeast
98
The Plaque Assay: Select one: a. A) Is based on the fact that infection is latent in the majority of infected cells, leading to the formation of plaques of dead cells only by the non-latent viruses. b. A) Is based on the fact that each virion initially infects a single cell, and its progeny infects neighbouring cells, leading to the formation of a plaque of dead cells. c. Provides a measure of the efficiency of viral replication d. Provides a measure of the size of the viral genome.
The Plaque Assay: Select one: a. A) Is based on the fact that infection is latent in the majority of infected cells, leading to the formation of plaques of dead cells only by the non-latent viruses. **b. A) Is based on the fact that each virion initially infects a single cell, and its progeny infects neighbouring cells, leading to the formation of a plaque of dead cells.** c. Provides a measure of the efficiency of viral replication d. Provides a measure of the size of the viral genome.
99
# Define S. epidermidis
a gram-positive, coagulase-negative cocci that is a part of our skins normal flora
100
Where are *Toxoplasma* cysts activated?
In the gut
101
How is Malaria transmitted?
Malaria parasites are transmitted from one person to another by the female Anopheles mosquito. The males do not transmit the disease as the feed only on plant juices
102
What is the eclipse period?
Stage where no new viruses are present in host cells
103
# Define Pathogenicity
the property of causing disease
104
How can bacteria avoid being recognised or inhibit internalisation?
* Avoiding opsonisation * Forming capsules (hides PAMPs) * Forming biofilms
105
# Definition an organism that lives in or on an organism of another species (its host) and benefits by deriving nutrients at the other's expense
Parasites
106
What cells do *Toxoplasma* infect?
Invasion of multiple cells types including moncytes, macrophages, dendritic cells
107
True or False: Viruses are only able to grow within a cell
False Viruses do not grow, but they can only assemble within cells
108
What is the life cycle of a roundworm
109
# Definition a unit made up of linked genes which is thought to regulate other genes responsible for protein synthesis
Operon
110
# Definition collection of nucleic acids, both RNA and DNA, that make up the viral community associated with a particular ecosystem or holobiont
Virome
111
True or False Disease causing toxins may be found in the cell wall of a bacteria
False Disease causing toxins may be found in the **outer membrane** of a bacteria
112
# Definition the genetic material of a bacteriophage, incorporated into the genome of a bacterium and able to produce phages if specifically activated
Prophage
113
# Define Bacteriophages
a virus which parasitizes a bacterium by infecting it and reproducing inside it
114
# Definition distinct class of genomic islands acquired by microorganisms through horizontal gene transfer. They are found in both animal and plant pathogen
Pathogenicity island
115
# Definition a staining technique for the preliminary identification of bacteria, in which a violet dye is applied, followed by a decolorizing agent and then a red dye. The cell walls of certain bacteria (denoted Gram-positive ) retain the first dye and appear violet, while those that lose it (denoted Gram-negative ) appear red
Gram stain
116
What are A-B toxins and what do they do?
Binary toxins with a catalytic 'warhead' (A) and a targeting component (B). It causes post-translational modifications of polypeptides
117
E. coli is not present in all humans Select one: True False
E. coli is not present in all humans Select one: True **False**
118
# Definition Any of many parasitic protozoans, of the class Sporozoa, that reproduce alternately sexually and asexually via spores; they are responsible for diseases such as malaria
Sporozones
119
# Definition bacteria that cannot live outside the host cell
Obligate intracellular pathogens
120
How do bacteria avoid eliciting or detection by antibodies?
1. Remain inside host cells 2. Host mimicry 3. Coat with host proteins 4. Colonise sites with poor access for antibodies 5. Keep ahead of the immune system
121
Which enzymes needed by viruses to convert their nucleic acid into mRNA must be encoded by the virus itself?
RNA-dependent RNA polymerase RNA-dependent reverse transcriptase
122
How do you treat Candidiasis?
* There is no satisfactory treatment currently * Antifungals used for cutaneous lesions and systemic candidiasis
123
# Define Lytic cycle
one of the two cycles of viral reproduction that results in the destruction of the infected cell and its membrane
124
What makes up the bacterial cytoplasm?
Cytosol Nucleoid - chromosome Ribosomes Inclusion bodies (e.g. endospores) Cytoskeletal components
125
# Definition small masses of lymphatic tissue found throughout the ileum region of the small intestine
Peyer's Patch
126
# Define Naked virus
A virus lacking the viral envelope
127
# Define Cytopathic
structural changes in host cells that are caused by viral invasion
128
What are the symptoms of Cryptosporidiosis?
Diarrhea Stomach pain Nausea Fever Fatigue
129
# Define Acid-fast bacteria
bacteria with a cell wall rich in special acids, called mycolic acids
130
When are virulence genes expressed?
When the bacteria sense a specific niche or in response to population density
131
How many types of viruses are considered in the Baltimore Classification Scheme?
7
132
Why do antibiotics that target ribosomes not effect human cells?
The antibiotics act on the 70S ribosomes unit but has no effect on the 80S units found in human cells
133
How are healthy individuals treated for Toxoplasmosis?
* Usually no treatment necessary, symptoms abate within weeks to months * But... infection leads to chronic infection (may need later treatment) * Most cases go undiagnosed and remain clinically unapparent
134
# Definition the severity or harmfulness of a disease or poison
Virulence
135
# Define Infection
a proliferation of a harmful strain of bacteria on or inside the body
136
# Define Plasmid
a genetic structure in a cell that can replicate independently of the chromosomes, typically a small circular DNA strand in the cytoplasm of a bacterium or protozoan
137
# Define Prophage
the genetic material of a bacteriophage, incorporated into the genome of a bacterium and able to produce phages if specifically activated
138
True or False: (-) ssRNA viruses, but not (+) ssRNA viruses must deliver RNA-dependent RNA polymerase protein with genome
True
139
# Define Excavata
a supergroup of protists that are defined by an asymmetrical appearance with a feeding groove that is “excavated” from one side; it includes various types of organisms which are parasitic, photosynthetic and heterotrophic predators
140
Koch’s postulates are four criteria that are used to determine whether a disease is caused by a particular microorganism. Which of the following is not a postulate? Select one: a. The pathogen must be found in all cases of disease b. The pathogens must be cultured outside the host in the laboratory c. The pathogen must cause disease in a healthy animal d. The pathogen must be tested in humans to determine whether it causes disease e. The pathogen should be re-isolated from the test animal
Koch’s postulates are four criteria that are used to determine whether a disease is caused by a particular microorganism. Which of the following is not a postulate? Select one: a. The pathogen must be found in all cases of disease b. The pathogens must be cultured outside the host in the laboratory c. The pathogen must cause disease in a healthy animal **d. The pathogen must be tested in humans to determine whether it causes disease** e. The pathogen should be re-isolated from the test animal
141
# Definition an association between two organisms in which one benefits and the other derives neither benefit nor harm
Commensalism
142
True or False: It is not possible to become infected with *Giardia* through contact with blood
True Cysts form in gut
143
# Define Lipopolysaccharide (LPS) layer
the major component of the outer membrane of Gram-negative bacteria
144
Staphylococcus epidermidis is present in all human beings Select one: True False
Staphylococcus epidermidis is present in all human beings Select one: **True** False
145
Where does the *Plasmodium* develop in the mosquito?
The *Plasmodium* develops in the gut of the mosquito and is passed on in the saliva of an infected infect
146
# Define Pilin
a class of fibrous proteins that are found in pilus structures in bacteria
147
Approximately \_\_% of pathogens known to affect humans are zoonotic
Approximately **70**% of pathogens known to affect humans are zoonotic
148
# Definition the infection specificity of certain pathogens to particular hosts and host tissues
Host tropism
149
Why is Toxoplasmosis particularly dangerous for pregnant women?
Parasites (tachyzoites) can cross the placenta to the foetus
150
What percentage of microbes are pathogenic?
Less than 5%
151
# Definition a gram-positive, coagulase-negative cocci that is a part of our skins normal flora
S. epidermidis
152
# Definition a parasitic flatworm; a tapeworm.
Cestodes
153
# Definition a toxin that cause host cells to lyse by forming pores in plasma membrane
Membrane-distrupting toxins
154
# Define Microorganisms
a microscopic organism, especially a bacterium, virus, or fungus.
155
# Define Periplasmic space
a concentrated gel-like matrix in the space between the inner cytoplasmic membrane and the bacterial outer membrane called the periplasmic space in gram-negative bacteria
156
# Definition a relict, nonphotosynthetic plastid found in most protozoan parasites belonging to the phylum Apicomplexa
Apicoplast
157
Draw the Baltimore Classification Scheme diagram
158
# Definition the complete, infective form of a virus outside a host cell, with a core of RNA and a capsid
Virions
159
What is a biofilm?
a group of organisms living in a hydrated polymeric matrix
160
# Define Fungi
any of a group of spore-producing organisms feeding on organic matter, including moulds, yeast, mushrooms, and toadstools
161
# Define O antigen
an antigen that occurs in the body of a gram-negative bacterial cell
162
What is the name of an organism that can grow in the presence or absence of oxygen?
Faculative anaerobe
163
What happens when *Plasmodium* sporozotes infect humans?
Sporozotes are carried by the blood to the liver where they form cyst-like structures containing thousands of merozoites. After 9-16 days they return to the blood and penetrate the red blood cells, where they multiply again, progressively breaking down the RBCs
164
How do naked viruses egress?
Lysis
165
True or False: The normal flora is well developed in the womb
False The fetus is sterile in the womb
166
# Definition a virus which parasitizes a bacterium by infecting it and reproducing inside it
Bacteriophages
167
# Define Commensalism
an association between two organisms in which one benefits and the other derives neither benefit nor harm
168
Where are the coat proteins of enveloped and naked viruses found?
Bound to receptors of the capsid of naked viruses and the glycoproteins of enveloped
169
# Definition a Gram-positive, round-shaped bacterium that is a member of the Firmicutes, and it is a usual member of the microbiota of the body, frequently found in the upper respiratory tract and on the skin
S. aureus
170
# Definition an abnormal form of a normally harmless protein found in the brain that is responsible a variety of fatal neurodegenerative diseases
Prions
171
# Definition a person or other organism that has become infected with a pathogen, but that displays no signs or symptoms
Asymptomatic carrier
172
# Definition the period between exposure to an infection and the appearance of the first symptoms
Incubatory
173
What features fo archaea share with Eukarya?
* DNA replication, transcription and translation seems more like that of Eukarya * Archaea DNA has histones * Many enzymes involved in DNA replication are similar to those found in Eukarya
174
An Asymptomatic carrier is one: Select one: a. who harbours the pathogen but does not show any symptoms of the disease b. who is free of the pathogen c. who is infected by the pathogen and is in the process of being sick with the disease d. whose has the antibodies against the disease causing agent
An Asymptomatic carrier is one: Select one: **a. who harbours the pathogen but does not show any symptoms of the disease** b. who is free of the pathogen c. who is infected by the pathogen and is in the process of being sick with the disease d. whose has the antibodies against the disease causing agent
175
Why do we study viruses?
* Viruses infect all living things * We eat and breathe billions of virions regularly * We carry viral genomes as part of our own genetic material * Viruses drive Global Cycles
176
What are the four basic shapes of bacteria?
Cocci Bacilli Spirochaete Comma's
177
How can Toxoplasmosis alter host behaviour?
Possibly linked to a parasite encoded tyrosine hydroxylase that mimics dopamine and therefore modifies behaviour
178
Where are extracellular parasites found?
Blood, intestines or genito-urinary system?
179
# Definition a protein structure found at the base of a eukaryotic undulipodium (cilium or flagellum)
Basal body
180
# Definition The microorganisms that usually occupy a particular body site
Resident flora
181
# Define Tissue tropism
the cells and tissues of a host that support growth of a particular virus or bacterium
182
# Define Exotoxins
a toxin released by a living bacterial cell into its surroundings
183
# Define Basal body
a protein structure found at the base of a eukaryotic undulipodium (cilium or flagellum)
184
Attachment or adhesion is mediated by: 1 – capsule 2 – cell wall 3 – cytoplasmic membrane 4 – invasins 5 – fimbriae 6 – ribosomes Select one: a. 1 & 6 b. 2 & 4 c. 3 & 5 d. 1 & 5
Attachment or adhesion is mediated by: 1 – capsule 2 – cell wall 3 – cytoplasmic membrane 4 – invasins 5 – fimbriae 6 – ribosomes Select one: a. 1 & 6 b. 2 & 4 c. 3 & 5 **d. 1 & 5**
185
# Definition a large phylum of parasitic alveolates. Most of them possess a unique form of organelle that comprises a type of plastid called an apicoplast, and an apical complex structure
Apicomplexa
186
# Define Glycocalyx
a carbohydrate-enriched coating that covers the outside of many eukaryotic cells and prokaryotic cells, particularly bacteria
187
What is the lifecycle of a hookworm?
188
# Define Virulence
the severity or harmfulness of a disease or poison
189
How do enveloped viruses egress?
Budding
190
# Define Dipicolinic acid
a chemical compound which composes 5% to 15% of the dry weight of bacterial spores. It is implicated as responsible for the heat resistance of the endospore.
191
# Define Parasitism
relationship between two species of plants or animals in which one benefits at the expense of the other, sometimes without killing the host organism
192
True or False: There are no vaccines available for any parasites
True
193
# Define Yeast
any unicellular fungus that reproduces vegetatively by budding or fission, including forms such as candida that can cause disease
194
What are the three types of symbiotic bacteria-human relationships?
Mutualism Commensalism Parasitism
195
In what ways do bacteria avoid complement fixation?
Having a capsule - prevents fixation Secreting complement degrading molecules Bind antibody by Fc receptor (upside down)
196
# Define 30S ribosome
the smaller subunit of the 70S ribosome found in prokaryotes. It is a complex of the 16S ribosomal RNA (rRNA) and 19 proteins
197
The resident flora of a person will not cause disease in humans Select one: True False
The resident flora of a person will not cause disease in humans Select one: True **False**
198
What are the Molecular Koch's postulates?
1. The virulence gene is always found in strains within a particular virulence phenotype 2. The gene should be expressed in the host 3. Mutation (inactivation) of that particular gene abolishes the virulence phenotype 4. Reintroduction of the gene reconstitutes the virulence phenotype
199
# Definition Any of a class of proteins associated with the penetration of bacteria into mammalian cells
Invasins
200
# Definition infection of the intestine with a flagellate protozoan, Giardia, which causes diarrhoea and other symptoms
Giadiasis
201
# Definition An agent that destroys or causes the expulsion of parasitic intestinal worms.
Anthelminthics
202
# Define Reverse transcriptase
an enzyme which catalyses the formation of DNA from an RNA template in reverse transcription.
203
# Definition An enzyme that catalyzes the splitting of a phospholipid molecule by the addition of water
Phospholipases
204
# Define Acute carrier
an infected individual who is not obviously diseases. Can be incubatory or convalescent
205
# Define Acid-fast stain
a differential stain used to identify acid-fast organisms such as members of the genus Mycobacterium
206
What are the two most common bacteria present in all humans?
* Staphylococcus epidermidis* * Escherichia coli*
207
# Definition the removal of moisture from something
Dessication
208
Prions are proteins that cause microbial diseases Select one: True False
Prions are proteins that cause microbial diseases Select one: True **False**
209
# Define Comma's
any curved-rod shaped bacterium
210
# Define Nematode
a worm of the large phylum Nematoda, such as a roundworm or threadworm
211
# Define Zoonoses
a disease which can be transmitted to humans from animals
212
# Define Candida albicans
an opportunistic pathogenic yeast that is a common member of the human gut flora. It can also survive outside the human body. It is detected in the gastrointestinal tract and mouth in 40–60% of healthy adults
213
# Define Apicoplast
a relict, nonphotosynthetic plastid found in most protozoan parasites belonging to the phylum Apicomplexa
214
# Definition any of a group of RNA viruses which insert a DNA copy of their genome into the host cell in order to replicate, e.g. HIV.
Retrovirus
215
# Define Interferon
a protein released by animal cells, usually in response to the entry of a virus, which has the property of inhibiting virus replication.
216
What happens when *Toxoplasma* faces pressure from the immune system?
They form slow-replicating bradyzoites
217
True or False: *E. coli* is an example of a bacteria that engages in mutualism with humans
True
218
# Define Convalescent
recovering from an illness or medical treatment
219
What are the symtoms of Toxoplasmosis in immunocompromised or pregnant individuals?
* Severe and serious pathological consequences * Immunocompromised individuals * Severe Toxoplasmosis involving gut, eye, heart, brain and other organ damage * Pregnant women * Foetus abnormalities * Can develop from acute infection or reactivation of cysts after infection earlier in life
220
Which of the following questions regarding bacterial invasion is true? Select one: a. Can involve the injection of bacterial effector proteins into the host cell by a type 3 secretion system b. The zipper mechanism is mediated in an “inside-out” manner following bacterial binding to host cell surface molecules c. Is dependent on spontaneous formation of membrane protrusions d. A specific interaction with the host cell is not required
Which of the following questions regarding bacterial invasion is true? Select one: **a. Can involve the injection of bacterial effector proteins into the host cell by a type 3 secretion system** b. The zipper mechanism is mediated in an “inside-out” manner following bacterial binding to host cell surface molecules c. Is dependent on spontaneous formation of membrane protrusions d. A specific interaction with the host cell is not required
221
# Definition referring to an RNA strand that can serve directly as messenger RNA and be transcribed into DNA
Positive sense
222
Where in the body are *Candida* normally found?
They normally reside in the intestinal tract and can be found on mucous membranes and skin withou causing infection
223
# Definition a lipid component of an endotoxin held responsible for the toxicity of gram-negative bacteria. It is the innermost of the three regions of the lipopolysaccharide (LPS), also called endotoxin molecule, and its hydrophobic nature allows it to anchor the LPS to the outer membrane
Lipid A
224
# Definition bacteria with a cell wall rich in special acids, called mycolic acids
Acid-fast bacteria
225
# Define Drenching
forcibly administer a drug in liquid form orally to (an animal)
226
# Definition the cause, set of causes, or manner of causation of a disease or condition
Aetiology
227
# Definition a rod-shaped bacterium
Bacilli
228
What are the enzymes that are used by viruses to convert there nucleic acid into mRNA? What do these enzymes do?
**RNA-dependent reverse transcriptase:** Converts RNA into DNA **RNA-dependent-RNA polymerase:** Replicates RNA from RNA template **DNA-dependent polymerase:** Replicates DNA from DNA template
229
What is the name of a parasitic organism that lives on the surface of its host?
Ectoparasite
230
# Definition a chemical compound which composes 5% to 15% of the dry weight of bacterial spores. It is implicated as responsible for the heat resistance of the endospore.
Dipicolinic acid
231
# Define Pathogenicity island
distinct class of genomic islands acquired by microorganisms through horizontal gene transfer. They are found in both animal and plant pathogen
232
# Define Pore-forming toxins
the most common bacterial cytotoxic proteins and are required for virulence in a large number of important pathogens that generally disrupt host cell membranes, but they can have additional effects independent of pore formation
233
# Define Prions
an abnormal form of a normally harmless protein found in the brain that is responsible a variety of fatal neurodegenerative diseases
234
What secondary cell polymers are found in the cell wall of a Gram-positive bacteria?
Teichoic acid Lipoteichoic acid
235
Which are usually more environmentally stable: Enveloped or naked viruses?
Naked viruses
236
# Definition bacteria that do not retain the crystal violet stain used in the gram-staining method of bacterial differentiation
Gram negative
237
# Definition a protein present in milk and other secretions, with bactericidal and iron-binding properties
Lactoferrin
238
Gram-negative bacteria have a complex outer membrane. What does it contain?
Proteins Lipoproteins Phopholipids Lipopolysaccharides
239
Non-transducing retrovirus can cause cancer by: Select one: a. Integration into the genome near to a tumour suppressor gene, enhancing its expression b. Integration within a proto-oncogene, silencing its expression c. Sequestration of a tumour suppressor protein by viral early gene E7 d. Integration into the genome near to an oncogene, enhancing its expression
Non-transducing retrovirus can cause cancer by: Select one: a. Integration into the genome near to a tumour suppressor gene, enhancing its expression b. Integration within a proto-oncogene, silencing its expression c. Sequestration of a tumour suppressor protein by viral early gene E7 **d. Integration into the genome near to an oncogene, enhancing its expression**
240
# Define Opportunistic pathogens
an infection caused by pathogens (bacteria, viruses, fungi, or protozoa) that take advantage of an opportunity not normally available, such as a host with a weakened immune system, an altered microbiota (such as a disrupted gut microbiota), or breached integumentary barriers
241
# Definition four criteria designed to establish a causative relationship between a microbe and a disease
Koch’s postulates
242
What is the most common type of plant pathogen?
Fungi
243
What specialised organelles do *Apicomplexa* have?
Apicoplast Apical complex
244
# Define Flagellum
a slender threadlike structure, especially a microscopic appendage that enables many protozoa, bacteria, spermatozoa, etc. to swim
245
What are the typical layers of a virus?
1. Nucleic acid (DNA or RNA) 2. Protein shell/capsid 3. (Other layers 'matrix') 4. (Envelope with glycoprotein)
246
# Define Positive sense
referring to an RNA strand that can serve directly as messenger RNA and be transcribed into DNA
247
Antibody-dependent enhancement (ADE)
occurs when non-neutralizing antiviral proteins facilitate virus entry into host cells, leading to increased infectivity in the cells
248
# Definition A virus lacking the viral envelope
Naked virus
249
# Definition a class of fibrous proteins that are found in pilus structures in bacteria
Pilin
250
Bacteria that completely lack a peptidoglycan layer will have what result in a Gram stain?
Stains Gram negative
251
# Definition a resistant asexual spore that develops inside some bacteria cells
Endospores
252
What is the function of the cell wall of a bacteria?
* Maintains shape of the bacterium * Provides strong structural support * Preventing bursting or collapsing due to osmotic pressure * Attachment site * Can contribute to pathogenicity * Can protect the cell from toxic substances * Site of action of some antibiotics
253
Activation of the right operon (lytic genes) causes what in viruses?
Expression of lysis genes for replication, lysis and assembly Repression of left operon promotor
254
What are the two types of membrane-disrupting toxins?
Phospholipases Pore-forming toxins
255
# Definition a worm of the large phylum Nematoda, such as a roundworm or threadworm
Nematode
256
# Definition the therapeutic use of bacteriophages to treat pathogenic bacterial infections
Phage therapy
257
# Define Lactoferrin
a protein present in milk and other secretions, with bactericidal and iron-binding properties
258
How can you get a giardia infection?
* Swallowing Giardia picked up fro msurfaces that contain faeces from an infected person or animal * Drinking water or using ice made from water sources where Giardia may live * Swallowing water while swimming or playing in water where Giardia could be present * Eating uncooked food that contains Giardia organisms * Having contact with someone who is ill with giardiasis * Travelling to countries where giardiasis is endemic
259
# Definition forcibly administer a drug in liquid form orally to (an animal)
Drenching
260
# Definition a large phagocytic cell found in stationary form in the tissues or as a mobile white blood cell, especially at sites of infection
Macrophages
261
# Definition Microbes inhabiting a body surface or cavity for a brief period of time, usually as a result of their promotion and selection by antibiotic therapy, chemotherapy, hospitalization, illness, or surgery
Transient flora
262
What are the major impediments for the multiplication and dissemination of bacteria?
Immune system Normal flora Availability of nutrients
263
What shaped bacteria are most likely to produce endospores?
Bacilli
264
# Define Teichoic acid
a compound present in the walls of Gram-positive bacteria. It is a polymer of ribitol or glycerol phosphate
265
True or False: Most parasites are eukaryotic
True
266
# Define Pili
a hair-like appendage found on the surface of many bacteria and archaea
267
# Definition an antigen that occurs in the body of a gram-negative bacterial cell
O antigen
268
# Define Nucleoid
an irregularly shaped region within the cell of a prokaryote that contains all or most of the genetic material, called genophore
269
270
True or False: Viruses are considered obligate intracellular parasites
True
271
Where are intracellular parasites found?
In a wide variety of cells (RBCs, macrophages, epithelial cells, brain, muscle etc.)
272
# Define Germination
the process in which a spore begins to grow vegetative cells, and sporeling hyphae
273
# Definition chemotrophs that are heterotrophic organisms. They are not capable of fixing carbon to form their own organic compounds
Chemoheterotrophs –
274
What is the primary host of *Toxoplasma?*
Wild and domestic cats
275
# Definition a strain of Methicillin-resistant bacteria.
MRSA
276
# Definition a bacterium commonly found in the intestines of humans and other animals, some strains of which can cause severe food poisoning
E. coli
277
What are the four Koch's postulates?
1. The microbe must be present in every case of the disease (and absent from healthy hosts) 2. The microbe must be isolated from the diseased hosts and grown in pure culture 3. The disease must (should) be reprodiced when a pure culture is introduced into a healthy (susceptible) host 4. The microbe must be revoerable from an experimentally-infected host
278
# Define IgA
an antibody that plays a crucial role in the immune function of mucous membranes
279
Which mechanism is this?
Zipper mechanism
280
# Definition a microscopic organism, especially a bacterium, virus, or fungus.
Microorganisms
281
What are the 3 main structural forms of a virus?
Spherical Helical Complex
282
Describe helical viruses
Rod shaped coat Multiple repeating copies of protein coated onto the genome Hollow tube, like a spiral staircase
283
# Define Ectoparasite
parasitic organism that lives on the surface of its host
284
# Define S. aureus
a Gram-positive, round-shaped bacterium that is a member of the Firmicutes, and it is a usual member of the microbiota of the body, frequently found in the upper respiratory tract and on the skin
285
# Define Endospores
a resistant asexual spore that develops inside some bacteria cells
286
# Define Anthelminthics
An agent that destroys or causes the expulsion of parasitic intestinal worms.
287
# Definition any spherical or roughly spherical bacterium
Cocci
288
# Define 70S ribosome
the type of ribosome found in bacteria and archaea that are comprised of a small 30S subunit and large 50S subunit
289
# Definition nuclear or cytoplasmic aggregates of stable substances, usually proteins. They typically represent sites of viral multiplication in a bacterium or a eukaryotic cell and usually consist of viral capsid proteins
Inclusion bodies
290
# Definition A normal gene which, when altered by mutation, becomes an oncogene that can contribute to cancer
Protooncogenes
291
# Define Sex pilus
structure that allow for the transfer of DNA between bacteria, in the process of bacterial conjugation
292
When does *Candida* cause symptoms?
Overgrowth of these organisms
293
# Define Peyer's Patch
small masses of lymphatic tissue found throughout the ileum region of the small intestine
294
# Define Prokaryotes
a microscopic single-celled organism which has neither a distinct nucleus with a membrane nor other specialized organelles, including the bacteria and cyanobacteria
295
How does a virus switch from lysogenic to lytic?
SOS pathway Produces protease (recA) following DNA damage which degrades repressor of lytic pathway Lytic pathway activates and predominates
296
How do extracellular protic parasites evade the immune system?
Avoiding recognisition of their plasma membrane * Antigenic variation of surface antigens * Polymorphisms in dominant surface antigens * Degrading complement
297
Which mechanism is this?
Trigger mechanism
298
# Define Dessication
the removal of moisture from something
299
What are the two phases of a virus life cycle?
Virion phase Infected cell phase
300
# Definition microorganisms which are similar to bacteria in size and simplicity of structure but radically different in molecular organization. They are now believed to constitute an ancient group which is intermediate between the bacteria and eukaryotes
Archaea
301
# Define Baltimore Classification Scheme
a virus classification system that groups viruses into families, depending on their type of genome (DNA, RNA, single-stranded (ss), double-stranded (ds), etc..) and their method of replication
302
What bacteria produce superantigens?
Staph aureus Strep pyogenes
303
# Define Obligate intracellular pathogens
bacteria that cannot live outside the host cell
304
What is the growth limiting nutirent for bacteria?
Iron
305
# Definition the component of the 30S small subunit of a prokaryotic ribosome that binds to the Shine-Dalgarno sequence
16S rRNA
306
# Define MRSA
a strain of Methicillin-resistant bacteria.
307
# Definition an opportunistic pathogenic yeast that is a common member of the human gut flora. It can also survive outside the human body. It is detected in the gastrointestinal tract and mouth in 40–60% of healthy adults
Candida albicans
308
# Define Cocci
any spherical or roughly spherical bacterium
309
# Define Transposons
a chromosomal segment that can undergo transposition, especially a segment of bacterial DNA that can be translocated as a whole between chromosomal, phage, and plasmid DNA in the absence of a complementary sequence in the host DNA
310
The cell wall of Gram positive bacteria is thicker than that of Gram negative bacteria Select one: True False
The cell wall of Gram positive bacteria is thicker than that of Gram negative bacteria Select one: **True** False
311
# Define True hyphae
a long, branching filamentous structure of a fungus, oomycete, or actinobacterium
312
What features fo archaea share with bacteria?
* Anucleate cells * Cell envelope * Generally possess single circular chromosome * Vary shape and size
313
# Define IgA protease
a highly specific 106kDa enzyme that cleaves amino acid sequences of certain proteins. The natural substrate of it is immunoglobulin A, hence its name
314
What is the largest roundworm parasitising the human intestine?
*Ascaris lumbricoides*
315
# Define Giadiasis
infection of the intestine with a flagellate protozoan, Giardia, which causes diarrhoea and other symptoms
316
# Define Faculative anaerobes
an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation or anaerobic respiration if oxygen is absent
317
# Define Viruses
an infective agent that typically consists of a nucleic acid molecule in a protein coat, is too small to be seen by light microscopy, and is able to multiply only within the living cells of a host
318
# Define Capsid
the protein shell of a virus
319
# Definition a microscopic single-celled organism which has neither a distinct nucleus with a membrane nor other specialized organelles, including the bacteria and cyanobacteria
Prokaryotes
320
# Define PAMPs
molecules shared by groups of related microbes that are essential for the survival of those organisms and are not found associated with mammalian cells
321
Mycobacterium tuberculosis is different to Gram positive and Gram negative bacteria in that it has: Select one: a. LPS b. mycolic acid c. peptidoglycan d. cell membrane
Mycobacterium tuberculosis is different to Gram positive and Gram negative bacteria in that it has: Select one: a. LPS **b. mycolic acid** c. peptidoglycan d. cell membrane
322
# Definition a flexible spirally twisted bacterium, especially one that causes syphilis
Spirochaete
323
What are the characteristics of the genus *Staphylococcus*?
* Gram positive cocci * Form irregular clusters * Non-motile * Faculative anaerobes * Catalase positive
324
# Definition the property of causing disease
Pathogenicity
325
How is (-) ssRNA converted into mRNA?
Needs to be converted into mRNA by RNA-dependent RNA polymerase
326
# Define Provirus
the genetic material of a virus as incorporated into, and able to replicate with, the genome of a host cell
327
Mariaus Demariaeii is a bacteria thought to cause an emerging hospital acquired infection frequently manifesting as necrotising fasciitis. It has been found that this bacterium frequently loses pathogenicity in culture. This is a limitation associated with which of Koch’s postulates? Select one: a. Postulate 2 b. Postulate 1 c. Postulate 3 d. Postulate 4
Mariaus Demariaeii is a bacteria thought to cause an emerging hospital acquired infection frequently manifesting as necrotising fasciitis. It has been found that this bacterium frequently loses pathogenicity in culture. This is a limitation associated with which of Koch’s postulates? Select one: a. Postulate 2 b. Postulate 1 **c. Postulate 3** d. Postulate 4
328
# Define Apical complex
A group of cytoskeletal structures and associated membrane-bounded organelles found at the anterior end of adult obligate intracellular protozoan parasites in the phylum Apicomplexa
329
The peptidoglycan layer of Gram-negative bacteria is much thinner than Gram-positive bactera. What properties does this give Gram-negative bacteria?
Relatively greater flexibility but sensitive to lysis
330
# Define Contact transmission
a type of infection transmission that involves direct or indirect interaction between organisms
331
# Definition a toxin released by a living bacterial cell into its surroundings
Exotoxins
332
# Definition the smaller subunit of the 70S ribosome found in prokaryotes. It is a complex of the 16S ribosomal RNA (rRNA) and 19 proteins
30S ribosome
333
# Define Vehicle transmission
the transmission of pathogens through vehicles such as water, food, and air
334
# Define Nucleocapsid
the capsid of a virus with the enclosed nucleic acid
335
# Definition the regulation of gene expression in response to fluctuations in cell-population density
Quorum sensing
336
True or False: There are virtually no known Archaea pathogens of humans
True
337
# Define Giardia
a microscopic parasite that causes the diarrheal illness known as giardiasis
338
What are the two types of bacterial toxins?
Exotoxins Endotoxins
339
# Define Enveloped virus
A virus that has an outer wrapping or envelope
340
True or False: Bacteria that completely lack peptidoglycan are insensitive to penicillin
True
341
# Definition a small amoeboid sporozoan trophozoite (as of a malaria parasite) produced by schizogony that is capable of initiating a new sexual or asexual cycle of development
Merozoites
342
# Define Lipoteichoic acid
a major constituent of the cell wall of gram-positive bacteria
343
What are the limitations of Koch's postulates?
1. No host factors are taken into account (i.e. carrier states or opportunistic pathogens) 2. Emphasis on ability to culture the organism 3. Organisms can lose virulence/pathogenicity during laboratory cultre 4. Disease may nor require the organism to infect the host (i.e. toxins) 5. Requires a suitable/susceptible animal model
344
What are some examples of protozoan diseases?
Toxoplasmosis Cryptosporidiosis Giardiasis Malaria
345
# Define Helminths
a parasitic worm; a fluke, tapeworm, or nematode
346
# Define Aetiology
the cause, set of causes, or manner of causation of a disease or condition
347
How can viruses cause cancer?
Activation of cellular oncogenes Expression of their oncogenes Inactivation of tumor supressors
348
# Define Myocolic acid
long fatty acids found in the cell walls of the Mycolata taxon, a group of bacteria that includes Mycobacterium tuberculosis, the causative agent of the disease tuberculosis
349
# Definition relationship between two species of plants or animals in which one benefits at the expense of the other, sometimes without killing the host organism
Parasitism
350
Which one of these is not present in prokaryotes Select one: a. cell wall b. spore c. cell membrane d. nucleus
Which one of these is not present in prokaryotes Select one: a. cell wall b. spore c. cell membrane **d. nucleus**
351
# Define Colonisation –
the presence of bacteria on a body surface (like on the skin, mouth, intestines or airway) without causing disease in the person
352
# Definition a virus classification system that groups viruses into families, depending on their type of genome (DNA, RNA, single-stranded (ss), double-stranded (ds), etc..) and their method of replication
Baltimore Classification Scheme
353
# Definition a very large structure of many bacteria. It is a polysaccharide layer that lies outside the cell envelope, and is thus deemed part of the outer envelope of a bacterial cell
Capsule
354
\_\_\_\_\_\_\_\_\_\_\_\_\_: the sum of the number of healthy years of life lost due to ill health, disability and premature death
**Disability Adjusted Life Years (DALYs)**: the sum of the number of healthy years of life lost due to ill health, disability and premature death
355
What part of the bacteria cell wall is unique to bacteria?
Pepidoglycan layer
356
How do bacteria evade phagocytes?
* Avoid being recognised or inhibit internalisation * Kill the phagocyte/induce apoptosis (antiphagocyte toxins) * Inhibition of phagolysosome (survive phagocytosis)
357
What are the two stages of *Giardia lamblia*?
Resistant cyst stage Vegetative trophozoite stage
358
# Definition an infective agent that typically consists of a nucleic acid molecule in a protein coat, is too small to be seen by light microscopy, and is able to multiply only within the living cells of a host
Viruses
359
What is the Selective media to identify S. aureus?
Mannitol salt agar
360
# Definition parasitic organism that lives on the surface of its host
Ectoparasite
361
# Define Capsule
a very large structure of many bacteria. It is a polysaccharide layer that lies outside the cell envelope, and is thus deemed part of the outer envelope of a bacterial cell
362
What are the mechanisms of disease of viruses?
1. Cell death (cytopathic) 2. Immunipathology (overaggressive response) 3. Immunosuppression 4. Oncogenesis
363
How are pregnany/immunocompromised individuals treated for Toxoplasmosis?
Antibiotics
364
# Definition A virus that has an outer wrapping or envelope
Enveloped virus
365
# Define Complement –
a part of the immune system that enhances the ability of antibodies and phagocytic cells to clear microbes and damaged cells from an organism, promote inflammation, and attack the pathogen's cell membrane
366
# Define Histones
any of a group of basic proteins found in chromatin
367
# Define Eclipse period
the time between infection by (or induction of) a bacteriophage, or other virus, and the appearance of mature virus within the cell; an interval of time during which viral infectivity cannot be recovered
368
# Define Mutualism
symbiosis which is beneficial to both organisms involved
369
# Definition a growing stage in the life cycle of some sporozoan parasites, when they are absorbing nutrients from the host
Trophozoites
370
# Define Sporozones
Any of many parasitic protozoans, of the class Sporozoa, that reproduce alternately sexually and asexually via spores; they are responsible for diseases such as malaria
371
# Define Membrane-distrupting toxins
a toxin that cause host cells to lyse by forming pores in plasma membrane
372
How do *Plasmodium* reproduce?
**Sexual reproduction:** in anopheles mosquito **Asexual reproduction:** in human (called _sporozoans_) in which sporozones multiply to produce merezoites, these, in turn, become trophozoites
373
# Define Superantigens
a class of antigens that result in excessive activation of the immune system. Specifically it causes non-specific activation of T-cells resulting in polyclonal T cell activation and massive cytokine release
374
# Definition a long, branching filamentous structure of a fungus, oomycete, or actinobacterium
True hyphae
375
# Define Mobile genetic element
DNA sequences that can move around the genome, changing their number of copies or simply changing their location, often affecting the activity of nearby genes
376
How do bacteria outcompete host cells for iron?
* Secreting very high affinity iron-chelators (siderophores) and have siderophore receptors to capture them * Expressing high-affinity iron-binding membrane proteins * Expressing receptors for iron capture proteins (e.g. lactoferrin, transferron) used by host * Express toxins to release host Fe
377
# Define Endotoxins
a toxin present inside a bacterial cell that is released when it disintegrates
378
True or False: Fimbriae are larger than pili
False **Pili** are larger than **fimbriae**
379
# Define Retrovirus
any of a group of RNA viruses which insert a DNA copy of their genome into the host cell in order to replicate, e.g. HIV.
380
# Define Lysogenic
a bacterial cell which can produce and transfer the ability to produce a phage
381
# Definition structure that allow for the transfer of DNA between bacteria, in the process of bacterial conjugation
Sex pilus
382
What are the symptoms of *Giardia* infections?
Diarrhea Gas Greasy stool Stomach cramps Nausea Dehydration
383
What surrounding the peptidoglycan layer is unique to Gram-negative bacteria?
Periplasmic space
384
What is the function and importance of the LPS layer?
* Contributes to the structural integrity of the outer membrane and forms a permeability barrier for certain chemicals * Increases the negative charge of the cell membrane and helps stabilise overall memebrane structure * Essential for bacterial survival - so possible therapeutic target * Collectively highly immunogenic... but 'molecular mimicry' and rapid antigenic variation provided by the glycan O * The lipid A portion is a major, potent endotoxin
385
# Define Gram negative
bacteria that do not retain the crystal violet stain used in the gram-staining method of bacterial differentiation
386
# Definition a disease caused by toxoplasmas, transmitted chiefly through undercooked meat, soil, or in cat faeces. Symptoms of infection generally pass unremarked in adults, but can be dangerous to unborn children.
Toxoplasmosis
387
# Define Chemoheterotrophs –
chemotrophs that are heterotrophic organisms. They are not capable of fixing carbon to form their own organic compounds
388
# Definition a genetic structure in a cell that can replicate independently of the chromosomes, typically a small circular DNA strand in the cytoplasm of a bacterium or protozoan
Plasmid
389
# Define Lysis
the disintegration of a cell by rupture of the cell wall or membrane.
390
Which part of the cell do most viruses replicate?
Nucleus
391
How do intracellular protists evade the immune system?
By hiding inside a cell
392
# Definition long fatty acids found in the cell walls of the Mycolata taxon, a group of bacteria that includes Mycobacterium tuberculosis, the causative agent of the disease tuberculosis
Myocolic acid
393
Capsules play an essential role in bacterial pathogenesis because they: Select one or more: a. Are involved in bacterial motility b. Are involved in the transfer of genetic material c. Prevent phagocytosis d. Allow evasion of antigen-specific antibody responses e. Cause sepsis f. Prevent osmotic lysis g. Are involved in adhesion
Capsules play an essential role in bacterial pathogenesis because they: Select one or more: a. Are involved in bacterial motility b. Are involved in the transfer of genetic material **c. Prevent phagocytosis** **d. Allow evasion of antigen-specific antibody responses** e. Cause sepsis f. Prevent osmotic lysis **g. Are involved in adhesion**
394
# Definition a subunit of the capsid, an outer covering of protein that protects the genetic material of a virus
Capsomeres
395
Which one of the following describes the three structural types of a viral capsid? Select one: a. Helical, complex or icosahedral. b. Spherical, icosahedral or complex c. Helical, dodecahedral or complex d. Complex, helical or cubic.
Which one of the following describes the three structural types of a viral capsid? Select one: **a. Helical, complex or icosahedral.** b. Spherical, icosahedral or complex c. Helical, dodecahedral or complex d. Complex, helical or cubic.
396
What are the symtoms of Toxoplasmosis in healthy individuals?
* Acute systemic inflammatory response (mostly clinically unapparent) * Most common 'flu-like', swollen lymph glands, muscle/bone aches and pains * Infrequent, severe GI involvement associated with parasite infection * Symptoms often resolve quickly but result in a chronic infection with formation of tissue cysts; may or may not be symptomatic depending on the location of the cysts
397
# Definition a class of antigens that result in excessive activation of the immune system. Specifically it causes non-specific activation of T-cells resulting in polyclonal T cell activation and massive cytokine release
Superantigens
398
The Baltimore Scheme classifies viruses based on what?
1. Nature of genome nucleic acid 2. Mechanisms to generate mRNA (and replicated the genome) 3. How they make more genome
399
What causes Cryptosporidiosis?
Cryptosporidium infection
400
What happens during the intestinal phase of roundworm?
The intestinal phase causes malnourishment, intestinal blockage. It will move around the body in response to chemotherapy or fever. Typically occurs 6 - 8 weeks after initial exposure
401
# Definition an irregularly shaped region within the cell of a prokaryote that contains all or most of the genetic material, called genophore
Nucleoid
402
# Definition a person or other organism that has been infected with a pathogen for a long time who may or may not be symptomatic
Chronic carrier
403
True or False: Viruses all evolved from a single common ancestor
False
404
# Define Quorum sensing
the regulation of gene expression in response to fluctuations in cell-population density
405
# Definition Factor(s) required by the microorganism that enable it to cause disease
Virulence factor
406
# Definition a parasitic coccidian protozoan found in the intestinal tract of many vertebrates, where it sometimes causes disease.
Cryptosporidium
407
Which structure confers host specificity?
Tip of the pilus
408
# Definition the process in which a spore begins to grow vegetative cells, and sporeling hyphae
Germination
409
'Blueberry muffin' skin is typical of which condition?
Congenital toxoplasmosis
410
Which of the following AB toxin(s) are associated with alterations in muscle function? Select one or more: a. Botulinum toxin b. Tetanus toxin c. Diphtheria toxin d. Cholera toxin
Which of the following AB toxin(s) are associated with alterations in muscle function? Select one or more: **a. Botulinum toxin** **b. Tetanus toxin** c. Diphtheria toxin d. Cholera toxin
411
# Definition a disease caused by any fungus that invades the tissues, causing superficial, subcutaneous, or systemic disease
Human mycoses
412
What do virulence factors mediate?
* Colonisation of *de novo* niches in the body * Adhesion (ligands for host cell-expressed proteins) * Invasion * Immune evasion mechanisms (e.g. bacterial capsules) * Tissue damage (toxins)
413
# Definition a type of infection transmission that involves direct or indirect interaction between organisms
Contact transmission
414
Describe complex viruses
Large viruses; mixture of shapes, no consistent symmetry
415
# Define Lipid A
a lipid component of an endotoxin held responsible for the toxicity of gram-negative bacteria. It is the innermost of the three regions of the lipopolysaccharide (LPS), also called endotoxin molecule, and its hydrophobic nature allows it to anchor the LPS to the outer membrane
416
# Define Tumour-supressor gene
a gene that protects a cell from one step on the path to cancer
417
Which one of these features is present in a Gram negative bacterium but absent in a Gram positive bacterium? Select one: a. Peptidoglycan layer b. Periplasmic space c. cytoplasmic membrane d. LPS layer
Which one of these features is present in a Gram negative bacterium but absent in a Gram positive bacterium? Select one: a. Peptidoglycan layer b. Periplasmic space c. cytoplasmic membrane **d. LPS layer**
418
What is the difference between the CG content of pathogenicity islands compared to host DNA?
There is less C+G in pathogenicity islands
419
# Definition the presence of bacteria on a body surface (like on the skin, mouth, intestines or airway) without causing disease in the person
Colonisation –
420
# Define Virome
collection of nucleic acids, both RNA and DNA, that make up the viral community associated with a particular ecosystem or holobiont
421
Viruses cannot grow outside their host cells. Select one: True False
Viruses cannot grow outside their host cells. Select one: **True** False
422
# Definition an enzyme which catalyses the formation of DNA from an RNA template in reverse transcription.
Reverse transcriptase
423
# Definition a substance forming the cell walls of many bacteria, consisting of glycosaminoglycan chains interlinked with short peptides
Peptidoglycan
424
# Definition a strain of Staphylococcus aureus that is resistant to the antibiotic called vancomycin
VRSA
425
# Definition cell-surface components or appendages of bacteria that facilitate adhesion or adherence to other cells or to surfaces, usually the host they are infecting or living in
Adhesins –
426
# Define Host tropism
the infection specificity of certain pathogens to particular hosts and host tissues
427
How does latent infection occur?
VP16 and HCF in cytoplasm of neurons (instead of nucleus) Causes IE genes to be repressed Latency associated transcript (LAT) expressed LAT promotes heterochromatic formation Genome associates with heterochromatin
428
Commensal bacteria could become a pathogen through acquisition of virulence factors by? Select one: a. Infection with a lytic bacteriophage b. Excision of a pathogenicity island c. Quorum sensing to adapt to life in a biofilm d. Integration of a transposon
Commensal bacteria could become a pathogen through acquisition of virulence factors by? Select one: a. Infection with a lytic bacteriophage b. Excision of a pathogenicity island c. Quorum sensing to adapt to life in a biofilm **d. Integration of a transposon**
429
Where do Cryptosporidium undergo their sexual cycle?
In the vertebrate host (no insect vector)
430
How is (+) ssRNA converted into mRNA?
They are equivalent so can be directly translated by the cell
431
# Define Budding
a form of viral shedding by which enveloped viruses acquire their external envelope from the host cell membrane, which bulges outwards and encloses the virion
432
What are the four main modes of pathogen transmission?
Airborne Contact Vehicle Vector borne
433
# Define Colicins
a bacteriocin produced by a coliform bacterium
434
# Define Inclusion bodies
nuclear or cytoplasmic aggregates of stable substances, usually proteins. They typically represent sites of viral multiplication in a bacterium or a eukaryotic cell and usually consist of viral capsid proteins
435
What causes Malaria?
*Plasmodium* infection
436
# Define Gram stain
a staining technique for the preliminary identification of bacteria, in which a violet dye is applied, followed by a decolorizing agent and then a red dye. The cell walls of certain bacteria (denoted Gram-positive ) retain the first dye and appear violet, while those that lose it (denoted Gram-negative ) appear red
437
# Definition the disintegration of a cell by rupture of the cell wall or membrane.
Lysis
438
# Definition any of a group of basic proteins found in chromatin
Histones
439
# Definition one of the two cycles of viral reproduction that results in the destruction of the infected cell and its membrane
Lytic cycle
440
# Definition a bacteriocin produced by a coliform bacterium
Colicins
441
How do bacteria mimic host cells to avoid antibodies?
Make capsules with sugars mimicking host surface glycoproteins
442
In class 1 viruses, where does the reverse transcriptase for early genes come from?
The viral genome
443
# Definition a slender threadlike structure, especially a microscopic appendage that enables many protozoa, bacteria, spermatozoa, etc. to swim
Flagellum
444
A Gram stain was carried out it was observed that bacteria appeared purple in colour and appeared as cocci in clusters. Given this information which one of the genus would this bacteria most likely belong to: Select one: a. Bacillus b. Streptococcus c. Escherichia d. Staphylococcus
A Gram stain was carried out it was observed that bacteria appeared purple in colour and appeared as cocci in clusters. Given this information which one of the genus would this bacteria most likely belong to: Select one: a. Bacillus b. Streptococcus c. Escherichia **d. Staphylococcus**
445
# Definition the time between infection by (or induction of) a bacteriophage, or other virus, and the appearance of mature virus within the cell; an interval of time during which viral infectivity cannot be recovered
Eclipse period
446
Antibodies may neutralise bacteria by: Select one: a. Lysing them with the assistance of complement b. Preventing them from secreting toxin molecules c. Preventing their attachment to cell surfaces d. Causing them to agglutinate.
Antibodies may neutralise bacteria by: Select one: a. Lysing them with the assistance of complement b. Preventing them from secreting toxin molecules **c. Preventing their attachment to cell surfaces** d. Causing them to agglutinate.
447
# Define Bacilli
a rod-shaped bacterium
448
What are the four steps in bacteria causing disease?
1. Exposure 2. Adherance 3. Penetration/invasion 4. Colonisation and growth
449
# Define Parasites
an organism that lives in or on an organism of another species (its host) and benefits by deriving nutrients at the other's expense
450
Describe the life cycle of *Giardia*
451
What are the two types of food born disease?
True infection (slow response) Intoxication (immediate response)
452
What is a viron called that isn't surrounded by a membrane? What is it called when it is?
Nucleocapsid = Naked Virus Nucleocapsid + membrane = Enveloped Virus
453
# Define Apicomplexa
a large phylum of parasitic alveolates. Most of them possess a unique form of organelle that comprises a type of plastid called an apicoplast, and an apical complex structure
454
# Define Koch’s postulates
four criteria designed to establish a causative relationship between a microbe and a disease
455
# Define Endoparasite
parasitic organism that lives within the host
456
# Define Eukaryotes
an organism consisting of a cell or cells in which the genetic material is DNA in the form of chromosomes contained within a distinct nucleus. They include all living organisms other than the eubacteria and archaea
457
# Definition a proliferation of a harmful strain of bacteria on or inside the body
Infection
458
# Definition a chromosomal segment that can undergo transposition, especially a segment of bacterial DNA that can be translocated as a whole between chromosomal, phage, and plasmid DNA in the absence of a complementary sequence in the host DNA
Transposons
459
# Define Phospholipases
An enzyme that catalyzes the splitting of a phospholipid molecule by the addition of water
460
What are the 5 basic steps of viral cell infection?
1. **Attachment:** Enter host organism, 'recognise' _specific target cell/tissue_: attach to correct host cell 2. **Penetration/uncoating:** Uncoating/release/exposure of genome payload: access to cellular components 3. **Gene expression/replication:** Synthesis of virion components (_Protein and nucleic acid)_ 4. **Assembly** of virions: Self-assembly of structural subunits (genome and protein); packaging of nucleic acid, maturation 5. **Release** of virions (budding, lysis etc.)
461
Why is the presence of D-amino acids in the peptidoglycan layer importent to bacteria survival?
D-amino acids protect against degradation by most peptidases since peptidases only recognise L-isomers of AA residues
462
# Define Peptidoglycan
a substance forming the cell walls of many bacteria, consisting of glycosaminoglycan chains interlinked with short peptides
463
# Definition occurs when non-neutralizing antiviral proteins facilitate virus entry into host cells, leading to increased infectivity in the cells
Antibody-dependent enhancement (ADE)
464
Viruses are very useful to which areas of modern science?
Oncolytic virotherapy Phage therapy Reverse transcriptase Viral gene therapy Lentivirus transduction
465
# Definition an antibody that plays a crucial role in the immune function of mucous membranes
IgA
466
# Definition the major component of the outer membrane of Gram-negative bacteria
Lipopolysaccharide (LPS) layer
467
Which endotoxin often leads to septic shock? How?
LPS which contains Lipid A (which is highly toxic to all animals) stimulates release of IL-1 and TNF which is detected by Toll-like receptor 4 and initiates an innate inflammatory signalling cascade
468
What happens during the lung phase of roundworm?
*A. lumbricoides* is known as Ascaris pneumontis. In the lung it causes hemorrhage, inflammation, bacterial infection. It also causes allergy in areas with seasonal transmission. Typically occurs at 6-14 days after initial exposure
469
# Definition any curved-rod shaped bacterium
Comma's
470
True or False: Humans are very vulnerable to fungi
False Humans are relatively resistant
471
# Definition two-component protein complexes secreted by a number of pathogenic bacteria. They can be classified as Type III toxins because they interfere with internal cell function
A-B toxins –
472
# Define Cryptosporidium
a parasitic coccidian protozoan found in the intestinal tract of many vertebrates, where it sometimes causes disease.
473
# Definition a part of the immune system that enhances the ability of antibodies and phagocytic cells to clear microbes and damaged cells from an organism, promote inflammation, and attack the pathogen's cell membrane
Complement –
474
# Definition A group of cytoskeletal structures and associated membrane-bounded organelles found at the anterior end of adult obligate intracellular protozoan parasites in the phylum Apicomplexa
Apical complex
475
# Definition a form of viral shedding by which enveloped viruses acquire their external envelope from the host cell membrane, which bulges outwards and encloses the virion
Budding
476
# Definition a protein produced by bacteria of one strain and active against those of a closely related strain
Bacteriocins
477
What are the advantages and disadvantages of parasitism to the parasite?
* Provision of nutrients (often essential) + * Protection from environment, host immune system etc. + * Host controls and regulates parasite growth and development (host immune system) -
478
# Define Bacteria
a member of a large group of unicellular microorganisms which have cell walls but lack organelles and an organized nucleus, including some which can cause disease
479
# Definition parasitic organism that lives within the host
Endoparasite
480
How do microbes avoid phagocytes?
Avoid recognition, internalisation, destruction or phagocytosis
481
# Define Biofilms
a thin but robust layer of mucilage adhering to a solid surface and containing a community of bacteria and other microorganisms
482
# Definition a disease which can be transmitted to humans from animals
Zoonoses
483
Activation of the left operon (lysogenic genes) causes what in viruses?
Expression of lysogeny genes including integrase Repression of right operon promotor
484
# Define Human mycoses
a disease caused by any fungus that invades the tissues, causing superficial, subcutaneous, or systemic disease
485
# Definition a bacterial cell which can produce and transfer the ability to produce a phage
Lysogenic
486
# Definition a member of a large group of unicellular microorganisms which have cell walls but lack organelles and an organized nucleus, including some which can cause disease
Bacteria
487
What two mechanisms mediate bacterial invasion?
Zipper mechanism Trigger mechanism
488
# Definition a highly specific 106kDa enzyme that cleaves amino acid sequences of certain proteins. The natural substrate of it is immunoglobulin A, hence its name
IgA protease
489
# Definition the genetic material of a virus as incorporated into, and able to replicate with, the genome of a host cell
Provirus
490
# Define Airborne transmission
a type of transmission that occurs when bacteria or viruses travel on dust particles or on small respiratory droplets that may become aerosolized when people sneeze, cough, laugh, or exhale
491
How are virulence factors acquired?
Through mobile genetic elements
492
What do superantigens do?
Cause T-cell activation without the antigen present. It does this by cross-linking MHC class II molecules on antigen-presenting cells and T-cell receptors on CD4+ T cells
493
True or False: In bacterial germination, one spore gives rise to one cell
True
494
What feature of acid-fast bacteria makes it impenetrable to most organic molecules including antibiotics?
The thick waxy nature of the lipids in the cell wall
495
What is the function of bacterial capsules?
Physical barrier that protects the bacteria cell: * Protect against desiccation * Prevents bacteriophages from attachment and infection * Protects against phagocytosis
496
How can the genetic material of viruses vary?
Some viruses have DNA; can be: * Double-stranded (ds) * Gapped * Single-stranded (ss) * Linear, circular Other viruses have RNA; can be: * Single-stranded (ss) * Double-stranded (ds) * Can be in positive (+) or negative (-) sense * Can be a single piece (non-segmented) * Can be mutliple pieces (segmented)
497
# Definition the protein shell of a virus
Capsid
498
# Definition a toxin present inside a bacterial cell that is released when it disintegrates
Endotoxins
499
# Define VRSA
a strain of Staphylococcus aureus that is resistant to the antibiotic called vancomycin
500
# Define Noscomial infections
infections that have been caught in a hospital and are potentially caused by organisms that are resistant to antibiotics
501
What does the life-cycle of Cryptosporidium include?
A single oocyst and a trophozoite stage
502
# Define Capsomeres
a subunit of the capsid, an outer covering of protein that protects the genetic material of a virus
503
# Define Cestodes
a parasitic flatworm; a tapeworm.
504
What is the lifecycle of a tapeworm?
505
# Definition a hair-like appendage found on the surface of many bacteria and archaea
Pili
506
# Define Elogate pseudohyphae
A chain of easily disrupted fungal cells that is intermediate between a chain of budding cells and a true hypha, marked by constrictions rather than septa at the junctions
507
What is the difference between resident flora and transient flora?
Resident flora is always present but transient flora is not
508
How do membrane-disrupting toxins work?
Lyse host cells by disrupting the integrity of their plasma membrane
509
What surrounds all viruses?
Capsid
510
What is the difference between transducing and non-transducing retroviruses?
**Transducing:** * Inset within a protooncogene * Transcribed together * Carry a dominant oncogene **Non-transducing:** * Inserts near a protooncogene * The provirus promotor activates a cellular oncogene in cis
511
# Definition an infected individual who is not obviously diseases. Can be incubatory or convalescent
Acute carrier
512
# Define Virions
the complete, infective form of a virus outside a host cell, with a core of RNA and a capsid
513
# Define Spirochaete
a flexible spirally twisted bacterium, especially one that causes syphilis
514
Which protein stimulates cellular DNA-dependent RNA polemerase to transcribe IE genes?
Viral protein VP16
515
What is the most common pathogenic *Candida*?
*Candida albicans*
516
*Excavata* have ______ plastids and _________ mitochondria
*Excavata* have **no** plastids and **highly reduced** mitochondria
517
# Definition a parasitic worm; a fluke, tapeworm, or nematode
Helminths
518
# Definition structural changes in host cells that are caused by viral invasion
Cytopathic
519
True or False: Cryptosporidium have both an apicoplast and apical complex
False They don't have a apicoplast
520
# Definition a concentrated gel-like matrix in the space between the inner cytoplasmic membrane and the bacterial outer membrane called the periplasmic space in gram-negative bacteria
Periplasmic space
521
# Define Chronic carrier
a person or other organism that has been infected with a pathogen for a long time who may or may not be symptomatic
522
# Define Candidiasis
infection with candida, especially as causing oral or vaginal thrush
523
# Define Plasmodia
a parasitic protozoan of a genus which includes those causing malaria.
524
# Define Golden staph
a common bacterium that lives on the skin or in the nose and in most situations it is harmless. However, if it enters the body through a cut in the skin, it can cause a range of mild to severe infections, which may cause death in some cases. Also known as S. aureus
525
# Define Protooncogenes
A normal gene which, when altered by mutation, becomes an oncogene that can contribute to cancer
526
# Definition bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their cell wall.
Gram positive
527
# Definition a parasitic protozoan of a genus which includes those causing malaria.
Plasmodia
528
What are the different modes of transmission for protozoan parasites?
Insect/tick vectors Ingestion of infective stage Venereal transmission (STDs)
529
How strong is the adhesion formed by pili/fibriae and adhesins?
Afibrial adhesins: Strong Pili/fimbriae: Loose
530
What is the most widespread and dangerous species of *Plasmodium*?
*Plasmodium falciparum* Can lead to cerebral malaria