Micro - UTIs, HIV, AIDS Flashcards
UTI facts
Ascending more common than descending (S. aureus)
More commonly found in:
- Women - d/t shorter urethra
- Children <2 (only show fever and different. urination patterns)
- Older adults
- Pregnant women (smooth muscle relaxation, urethral dilation, greater chance to progress to pyelonephritis). Untreated → premature or low birth wt. Give abx to prevent fetus from being colonized w/Grp B Strep
Recurrence - 3+ in 1 year (w/same microbe or new infection, different strain)
Risk factors - female, sex, diaphragm w/spermicide (kills Lactobacillus), hx of recurrent infection, catheters
Cystitis clinical presentation
Pelvis pressure (women) Fullness in rectum (men) Lower abd discomfort Frequent, burning, painful urination Low-grade fever (sometimes)
Acute pyelonephritis clinical presentation
- Upper back + flank pain
High fever
Shaking, chills, nausea
Vomiting
Complicated UTI
Predisposing anatomic, fxn’l, or metabolic abnormalities -> requires more aggressive evaluation and follow-up
Causative bacteria: E. coli, (S. saprophyticus?), K. pneumoniae, Proteus mirabilis, Enterococcus, Pseudomonas aeruginosa
Tx: antibiotics based on sensitivity testing (urine culture)
Uncomplicated UTI causative organisms
Anyone who is young and healthy: no specific pre-disposing factors or structural abnormalities
E. coli most common. Virulence factors: Adhesins - (Pili, Type I fimbriae, etc) Hemolysin A - lyses cells → cytokine release → inflam) Siderophores Ig proteases Ureases (P. mirabilis) Factors promoting colonization
Others: P. mirabilis, S. saprophyticus, K. pneumoniae
UTI dx and tx
Clean catch urine specimen (unspun, midstream): Pus + bacteria, WBC, RBC
- Culture and sensitivity (not often done, but best to know abx sensitivity)
- No simple test to distinguish UUTIs and LUTIs
Leukocyte esterase test
Presence of nitrates -> nitrites
UTI symptoms + leukocytes = adequate to d/x
UTI symptoms + pus but can’t isolate organisms → Mycoplasma or Chlamydia
HIV virus class
Retrovirus (Lentivirus)-slow viruses assoc w/ neurologic & immunosuppressive disease. Class VI RNA virus: s/s +, RT 2 copies (+) RNA noninfectious. RT → d/s provirus → integrates into host genome → mRNA → structural + NS proteins
4 accessory genes (vif, vpr, vpu, nef)
2 regulatory genes (virus-host interactions)
~1500 interactions between HIV-1 and human proteins
HIV characteristics
Host derived viral membrane. More orfs than simple retrovirus. 9 orfs -> 15 proteins
All Retroviruses encode:
Gag - grp spec Ag (core, capsid proteins)
Poly - enzs for transcription: RT, protease, integrase
Env - glycoproteins (gp120, gp41), spike proteins that stick out of envelope
Virus/host interactions: 2 regulatory genes: tat-modulates gene expression rev-nuclear/cyto shuttling 4 accessory genes
HIV life cycle
Binds/fusion-CD4+ T cell receptor/coreceptor
RT: ss RNA → ds DNA
Integrase-ds DNA enters host cell’s nucleus (hides) = provirus
Transcription-get signal to become active host RNA poly ds DNA → mRNA → protein, vRNA
Assembly-HIV protease cuts HIV proteins into smaller proteins (gag, gag-poly)
VIRUS=protein + vRNA
Budding-takes pt of cell’s outer envelope
Binds to CD4 receptors via glycoproteins
HIV pathogenesis
Tropism for CD4 T cells. Macrophage lineage cells. Enters via infected macrophages (reservoir). Dendritic cells-accumulate the virus particles on their surfaces but don’t internalize them (vehicles-carry virus to LN where they infect CD4 cells)
Chemokine receptors-CCR-5
AIDS due to ↓ CD4 T cells
Long period of clinically silent but dynamic virus replication/diversification
High host cell turnover
CPEs: HIV encephalopathy-virus spread → cell to cell syncytia seen in brain. Circulatory Ab’s have no effect
Immune evasion - Ag variation, carb masking target epitope, conform change by viral env to mask neutralization targets, ↓ reg of host HLA
viral latency in resting T cells + APC’s
HIV dx and tx
• Ab/Ag testing (usually w/ in a few wks of infxn), ELISA / Western Blot
• HIV testing: easier, more accessible, less invasive (e.g., oral fluid, urine, and finger-stick blood)
– in addition to serum specimens collected by venipuncture
• Rapid HIV testing - same day results
• Commercially available home sample collection devices (not FDA approved)
Need to monitor CD4+T cell #’s and viral load (to monitor t/x + tells you how rapid disease progression). • Therapy usually initiated when CD4+ cells < 350 cells/μl. Regimen individualized - protease inhibitor. 2 nuceloside RT inhibitors
GOAL - get HIV RNA level below assay detection limits• Undetected does not equal Uninfected!
– < 400 copies/ml considered undetectable
**HIV disclosure ruling clarified by top court: People with low-level HIV and condoms needn’t disclose infection
Misc. HIV tree
Origin of HIV-1: contaminated oral polio, smallpox vaccine contam, butchering of animals
• HIV-2 probably from sooty mangabey
• HIV-1 probably from chimpanzees
• Spread:
– Locally: Migration from rural areas to cities; commercial sex trade
– Regionally: Along highways
– Worldwide: Air travel, then locally once introduced
– Also transfusions, blood products, injection equipment
• Has given rise to a number of lineages
• Continuing to evolve (e.g., recombinants
of different HIV-1 subtypes)
Evolution: “bushy” family tree - many variants/recombinants co-exist in diff populations (subtype B-N. America, Europe)
Normal UG microflora
Urethra - Lactobacilli, Streptococci, coagulase-negative Staphylococci
Vagina - newborn girls -> colonized w/Lactobacilli, vaginal flora becomes more diverse afterwards. Lactobacilli most prominent during reproductive years
Before and after reproductive years, more diverse organisms
Lactobacilli
Gram positive, non-spore forming. Facultative or strict anaerobes, produce lactic acid and peroxidase (inhibit growth of other microbes)
Normally found in UGT, mouth, intestines, stomach. Rarely cause UTIs -> do not grow well in urine
Asymptomatic bacteriuria
Relatively common. Seen in pregnant patients at term, HTN pts, and DM pts. Anatomic obstruction increases incidence. Nearly all pts w/indwelling catheter w/open drainage for 48+ hrs
Complications of long-term urinary catheterization
- Obstruction -> bacterial glycocalyx
- Formation of encrustations and infxn stones consisting of urea, other complex substances
- Local infxns (urethritis, periurethral abscess, epididymitis, and prostatitis)
Most common bacterial cause of UTIs
UPEC (uropathogenic E.coli) - normal flora of GIT. ~85% of community- acquired, ~50% of hospital acquired UTIs
Pathogens: distinguished by acquired genes (iron acquisition, siderophores) -> virulence-distinct UPEC-associated biosynthesis
Key virulence features:
Type I - cystitis
P pili (attachment) - pyelonephritis
a- hemolysin, siderophore, PAIs
Serotypes: O (75% 6 of 200), K (capsular), F (fimbrial)
Host defenses in lumen of bladder
– Antimicrobial peptides
– Competition with iron-sequestering proteins
– Tamm-Horsfall Protein
• key urinary anti-adherence factor that prevents type 1 fimbriated E. coli from binding to the urothelial receptors
Non-E. coli UTIs
15% community, 50% nosocomial
- S. saprophyticus - young sexually active girls, asymptomatic, summer time. Uropathogenicity d/t novel cell wall-anchored adhesin, redundant uro-adaptive transport system, urease
- Proteus mirabilis - proteases, hemolysins, biofilm, urease (urine smells like ammonia, toxic to kidneys) (alkaline -> urine struvite cystals). Agar shows concentric circles -> ability to MOVE, SWARMING. Alternates between short vegetative state and longer HIGHLY flagellated state
- Klebsiella pneumoniae
- Mycoplasma and Ureaplasma
- Candida
- Chlamydia
Other UTI clinical outcomes
Prostatitis -> E. coli. Most serious but least common (chronic more common) (older men) reflux of urine into prostate ducts.
Epidiymitis - bacteria enters from prostate via ejac duct. Predisposing factors include prostatitis, indwelling urinary catheters, urologic surgery
Anal-oral
- Giardlia lamblia - protozoan
- Amoeba sp. - protozoan
- Shigella sp, E. coli - true bacteria
Vaginal discharge
Vaginitis - Trichomoniasis, Candidiasis
Cervicitis - G+C
Unusual vaginal discharge, itching, dysuria, dyspareunia
Urethral discharge
G+C
Urethral discharge, dysuria, freq urination
Genital ulcer
Syphilis, chancroid, genital herpes
Genital sore
Lower abdominal pain
G+C, mixed anaerobes
Lower abdominal pain, dyspareunia, vaginal discharge, temperature >38C.
Scrotal pain and swelling
G+C