Micro Flashcards

1
Q

coccidiodes

A
  • thermal dimorphes (mold/spherule) endemic to SW US
  • high morbidity; low mortality
    • 60% mild: flu with clearance/ contained by CMI
    • moderate: valley fever/ desert rhematism (pulmonary + EN)
    • severe: major pneumonia or desseminiation (bare or in PMNs)
  • RFs: age, race, immunocomp (pregnancy), job
  • Dx: history, PPD, biopsy for spherules, serology for dissemination
  • Tx: azoles (if comorbid), fluconazole (meningitis), AmphoB (pregnant or disseminated)
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2
Q

erythema nodosa

A

delayed cell-mediated HSR to fungal antigens→ red tender nodules on exterior surfaces

  • immunogenic complication of granulomatous disease
  • means risk of dissemination is low
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3
Q

histoplasma

A
  • therma dimorph (mold/intracellular yeast); soil-based (bird and bat poop; “spelunker’s disease”); endemic to OH, MI, MS river valleys
  • low dose fungus flu: innate immunity kills/ contains in granulomas→ EN
  • high dose= TB-like; CMI deficient disseminates in PMNs to mucocutaneous sites
    • pancytopenia and ulcerations on tongue
  • ​Dx: history, biopsy for yeast in PMNs
  • Tx: itraconazole (serious lung), fluconazole (meningitis), AmphoB (disseminated)
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4
Q

blastomyces

A
  • thermal dimorph (mold/yeast); broad based budding yeast endemic to E. US
  • innate immunity destroys conidia; yeasts harder to kill (BAD1)
  • immunocomp or pulm disease predisposes hematogenous spread
    • pneumonia: high fever, chills, cough w/sputum, pleuritic pain
    • moderate acute: pneumonia and sputum
    • moderate chronic: TB-like
    • severe acute: ARDS
    • EN or ulcerating skin lesions (dermatiditis)
  • ​Dx: cultures (sputum, lesion, suppurating granuloma)
  • Tx: itra/fluconazole, AmphoB if severe
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5
Q

paracoccidiodes

A
  • thermal dimorph (mold/multibud yeast); endemic to rural S.A.
  • semi-opportunistic
    • severe in children/ immunocomp
    • moderate in adults (men in agriculture/consulting); long latency
  • Dx: pus or tissue KOH
  • Tx: itraconazole, AmphoB and combine with treatment for correction of anemia, improved diet, rest smoking cessation, EtOH use
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6
Q

thermal dimorphs

A
  • coccidioes: spherules
  • histoplasma: yeast in PMNs
  • blastomyces: broad based budding yease
  • paracoccidiodes
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7
Q

opportunistic pulmonary fungal infections

A
  • seldom dangerous without specific predispositions (prolonged neutropenia, uncontrolled HIV or diabetes, profound T cell suppression)
  • cryptococcus: MC meningitis in HIV, yeast w/wide capsule, crag (latex agglutination)
  • aspergillosis:“peace sign” septate hyphae
  • mucormycosis: uncontrolled DM (ketoacidosis), Fe overload, immunocomp (leukemia); nonseptate hyphae w/90 degree angles; ribbon-like
  • fusarium: banana macroconidia
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8
Q

cryptococcosis

A
  • MC form of meningitis in HIV
  • widespread environmental; inhalation from pigeon droppings
  • infection originates in lung but clears or progresses to meningitis
  • patient presents late in disease with meningitis and skin nodules, or pulm symptoms
    • organ damage by tissue distortion from growing yeast; crytococcomas→ focal neuro defects
  • Dx: biopsy, CSF (yeast w/wide capsule), crag (latex agglutination)
  • Tx: azoles + ampho B; + flucytosine; fluconazole for LT suppression in AIDS
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9
Q

aspergillosis

A
  • ABPA: HSR to infection complicating astham, CF; Tx: inhaled sterois + itraconazole
  • Aspergilloma: colonizing fungus ball compliating cavitary lung disease; air crescent on scan; Tx: itraconazole + surgery
  • CNPA: mimics TB; Tx: voriconazole + AmphoB
  • Invasive: most severe, profound immunocomp→ respiratory distress, MI, hemorrhage; Dx: halo sign on scan (small hemorrhage), biopsy (hyphae branching at acute angles “peace sign”); Tx: voriconazole + AmphoB
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10
Q

mucormycosis

A
  • mucor or rhizopus→ v. rare deadly invasive vasculitis by environmental mold
  • invades brain from sinuses→ infarction; black pus
  • RF: uncontrolled DM (ketoacidosis), Fe overload, immunocomp (leukemia)
  • Dx: biopsy nonseptate hyphae w/90 degree angles; ribbon-like
  • Tx: AmphoB + aggressive surgical removal of disease
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11
Q

fusarium

A
  • ubiquitous environmental mold via sinus or wound; infection is rare but fatal
  • mycotoxicosis: contaiminated grain
  • local infection: burns, prosthetics, contaminated contact lens solution
  • disseminated infection: fungemia→ skin lesions; due to prolonged neutropenia, HSCT recipients
  • Dx: blood culture (banana macroconidia); histology to differentate from asperillus
  • Tx: aggressive surgery, AmphoB, voriconazole
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12
Q

mycobacteria characteristics

A
  • gram stain poorly; acid-fast; v. slow growing (2-3 wks)
  • virulence factors
    • obligate aerobe (grow in lung apex); most important
    • mycolic acid: resistant to desiccation and chemicals
    • cord factor
    • phosphatides: caseating necrosis
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13
Q

mycobacteria pathogenesis

A
  • almost always to lung by inhalation; hematogenous spread to lymph, kidney, bones, CNS; GI by swallowing infected sputum
  • healthy host rases strong CMI: intracellular infection of naive PMN→ CD4 activate PMN that clear it→ CD8 cells kill infected PMN and establish caseating granulomas→ latency for decades, reactivates with immunosenescence/ suppression
    • TNFa also important for containment
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14
Q

classic pulmonary TB

A
  • cough, weight loss, fever, night sweats, hemoptysis, chest pain
  • cavitary lesions: indicate advanced infection, assc w/ high bacterial load
  • noncalcified round infiltrates look like carcinoma vs. calcified nodules of old infection
    • xray may look normal if HIV+
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15
Q

extrapulmonary TB

A
  • CNS: high inflammation meningitis→ brudzinski’s sign
  • Miliary: hematogenous spread→ tiny noncalcified foci of infection in lung (more likely to develop after primary infection)
  • Pediatric: must be recently acquired (trace source), watch for miliary and meningitis; culture from gastric lavage (can’t cough hard enough to bring up sputum)
  • scrofula: painless enlarging lymph nodes
  • skeletal: Pott’s disease in spine
  • GI
  • GU
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16
Q

TB: Dx, Tx, and Prevention

A
  • Dx: determine exposure by TST and/or IGRA
    • PPD: type IV HSR; + indicated exposure NOT activate infection
  • erform Abx resistance testing as soon as cultures grow (2 wks to culture, 3 more for resistance)
  • isolate patient for first 2 weeks in negative pressure
  • Tx: DOTS with 4+ drug courses featuring isoniazid
  • BCG vaccine (live attenuated M. bovis) used abroad; can create a weak false positive TST
17
Q

MOTT

A
  • atypical environmentally-aquired mycobacteria; do not cause TB or leprosy
  • cutaneous infection in healthy host; scrofula in children; systemic in immunocomp
  • group 1 photochromogens: m. kansasii, m. marinum (tropical fish enthusiast w/ cutaneous granuloma)
  • group 2 scotochromogens: m. scrofulaceum
  • group 3 nonchromogens: m. avium/ m. intercellulare→ indistiguishable from TB in severely immunocomp
  • group 4 rapidly growing: m. fortuitum, m chelonei, m abcessus, m. smegmatis
18
Q

M. leprae

A
  • obligate intracellular (can’t culture); slowest growing human pathogen with extremely long incubation period; transmission with nasal discharge
  • tuberculoid: paucibacillary, vigorous CMI (lepromin +) contains infection and damages peripheral nerves;
  • lepromatous: multibacillary, weak CMI (lepromin -), extensive cutaneous lesions
  • Dx: lepromin PPD: tests anti-leprosy immunocompetence NOT exposure (unlike TB PPD)
  • Tx: 2yrs dapsone + rifampin
19
Q

bacterial pneumonias

A
  • pseudomonas
  • chlamydia
  • atypicals: legionella, c. burnetti, mycoplasma
20
Q

pseudomonas

A
  • gram-, strict aerobe (non fermenter); oxidase+, grows easily; capsule
    • p. aeruginosa: common, serious, MC presents in hospital; green pyocyanin in culture; no flowers in burn units
      • endocarditis in IVDA, otitis externa in hot tubs, osteochondritis in sneaker punctures, corneal infections under contacts
    • b. cepacia: common, serious, MC presents in CF centers
    • b. pseudomallei: rare; previously ill travelers/ immigrants from vietnam; weaponizable
    • b.mallei: rare; previously ill travelers/ immigrants with animal handling history; weaponizable
  • extreme abx resistance from low permeability outer membranes, efflux pumps
  • can present as septicemia/ pneumonia with poor prognosis
  • Dx: culture and gram stain
  • Tx: test sensitivity before and during treatment
21
Q

chlamydia

A
  • small, obligate intracellular bacterium
  • rugged elementary bodies (infectious) unpack into reticulate bodies (replicating) after infection; reticulate bodies form inclusions (T3SS) visible on microscopy, binary fission→ reticulate bodies and later elementary bodies
  • c. pneumonia: potential cause of walking pneumonia
  • c. trachomatis: several human diseases; MC bacterial STD; tissue culture in rape
  • c. psittaci:“parrot fever”: fever is MC symptom, v. contagious→ hepatitis
  • Tx: tetracycline (doxycycline) EXCEPT pregnant/ pediatric/ allergic
22
Q

legionella

A
  • poorly staining gram-; opportunistic facultative intracellular
  • aspiration or inhalation of contaminated water (cooling towers and whirlpools)
  • survives endocytosis by monos and PMNs by altering endosomes so it can multiply in them and escape
  • pontiac fever: flulike, no complications
  • legionnaire’s disease: life-threatening pneumonia; RF= >55y.o. smoker
  • Dx: BOTH urine antigen (detects LP1 strain) and culture of respiratory secretions
  • Tx: levofloxacin, azithromycin, erythromycin
23
Q

c. burnetii

A
  • small coccus to short rod, zoonotic infections from ruminants
  • aerosol transmission; v. infectious; long-lived in environment
  • grows in aveolar monos/ PMNs; survives endolysosomal fusion
  • Q fever: pneumo + hepatitis
  • Dx: immunohistochemistry
  • Tx: tetracyclines or fluoroquinolones
24
Q

mycoplasma

A
  • lack cell wall; CH in cell membrane
  • smallest free-living organism; fried-egg shape colonies (except with pneumonia)
  • reside on mucosal surface on inside airspace of lungsCARDS exotoxin-induced ciliostatis (dry cough), local inflammation and tissue destruction→ MCC walking pneumonia
  • persistance through slow growth and intracellular hiding
  • Abs against mycoplasma x-react with RBCs (cold agglutinins)anemia
  • chest radiography often looks worse than patient
  • Tx: tetracyclines or macrolides
    *
25
Q

coronavirus

A
  • +ssRNA; 2nd MCC of cold
  • transmission by respiratory droplets
  • rare new strains cause lethal respiratory disease→ SARS, MERS
26
Q

orthomyxovirus

A
  • segmented (-)ssRNA; influenza virus
  • envelop has 2 glycoproteins (hemagglutinin and neuraminidase) used to serotype
  • transmission through respiratory droplets and direct contact
  • Tx: tamiflu and relenza (neuraminidase inhibitors; must give early)
  • Flu vaccine: inactivated vaccine
  • FluMist: attenuated vaccine (not for babies or elderly)
27
Q

paramyxovirus

A
  • measles virus
  • nonsegmented (-)ssRNA (little genetic variation)
  • croup: peak incidence in winter; starts like cold→ infants develop distinctive barking cough
  • Tx: at home with humidifers;
28
Q

adenovirus

A
  • 100 serotypes, 47 infect humans→ pharyngoconjunctival fever
  • transmitted by aerosol, close contact, fecal-oral, ophthalmologic instruments
  • infects mucoepithelia cells
  • virus persists in lymphoid tissue; Ab essential for recovery
29
Q

hemophilus

A
  • gram-, pleomorphic, coccobaccilus; respiratory droplets
  • Hib: encapslated; more pathogenic, covered by vaccination
    • URI→ bacteremia→ meningitis, cellulitis, epiglottitis (cherry-red), septic arthritis
  • NTHi: unencapsulated (still have IgA protease, pili, adhesins); less pathogenic, no vaccination
    • neonatal and postpartum sepsis, CF pneumonia, systemic complications after untreated local mucosal infections
  • culture on chocolate agar with factors X and V
  • Tx: amoxicillin
30
Q

b. pertussis

A
  • short, gram- rod; v. contagious; incidence increasing due to inadequate vaccine coverage
    • dTaP: acellular vaccine, shorter-lived protection
    • dTP: whole killed pertussis
  • filamentous hemagglutinin attaches to ciliated epithelial cells; exotoxin→ ciliary stasis and cell death→ whooping cough (3 mo even with Rx)
    • dangerous with underlying conditions
    • pronounced leukocytosis
  • Tx: macrolides prevent progression and transmission but do not heal respiratory lining