MFD Theme 2a Flashcards
what are autochthonous microbiota
characteristically found at a site
adapted to survive and grow at that site
colonise the mouth and form dental plaque
what are allochthonous microbiota
transiently present at the site
do not thrive at site but may colonise transiently
what are the resident oral microbiota
archaea, viruses, fungi, bacteria
what are archaea and when are they commonly detected
part of prokaryotes, separate from bacteria
detected in periodontal disease
what is the most common virus
herpes simplex type 1 (HSV-1)
how can HIV and Hept B be carried
symptomatically
what infects bacteria and is the most common virus in the mouth
bacteriophage viruses
what is the most common fungi in the mouth
candida spp
what are the most abundant bacteria in the mouth
oral streptococci
what oral diseases are streptococci responsible for
caries, periodontitis, abscesses
what haemolysis does oral streptococci cause
a-haemolysis
what occurs in alpha haemolysis
H202 is produced which bleaches the haemoglobin - greenish brown appearance
what occurs in beta haemolysis
complete clearing of the agar
what haemolysis does staphylococcus cause
gamma haemolysis
what occurs is gamma haemolysis
no haemolysis
why might there be a greenish tinge on the kiss plate
viridan (oral) streptococci
what the difference between a core and peripheral microbiome
everyone has a core microbiome but the peripheral microbiome varies from individual to individual
what bacteria live on the tongue
streptococcus (salivarius/mitis group) veillonella actinomyces haemophilus prevotella
what bacteria live on the cheek
streptococcus (mitis group)
haemophilus
simonsiella
what bacteria form supragingival plaque
streptococcus
actinomyes
haemphilus
what bacteria form subgingival plaque
streptococcus actinomyces peptostreptococcus fusobacterium porphyromonas aggregatibacter
what bacteria are almost exclusively found in dental plaque
streptococcus gordonii
streptococcus sanguinis
what can saliva samples tell us about the bacteria in the mouth
gives us an average but doesn’t tell us the location of the bacteria
what can cause halitosis
anoxic bacteria and the bottom of the mouth
what are the microbial habitats in the mouth
lips, cheeks, palate
tongue
teeth
what are the characteristics of the lips, cheeks and palate
epithelial cells, continually shed (desquamation)
what are the characteristics of the tongue
highly papillated
reservoir for obligate anaerobes (perio.pathogens)
tonsils may also harbour perio pathogens
what are the characteristics of teeth
non-shedding
many different surfaces with different microbial populations
covered with acquired enamel pellicle
how can the pellicle be removed
by acid
what does the pellicle do
covers enamel
prevents enamel dissolution but can also help bacteria
how can you culture the microflora
isolate bacteria
- understand basic physiology/biochem
- link organism to disease
- identify pathogenesis mechanisms
- test antibiotics
how can you count the no of different species of bacteria in a clinical sample
culturing and count colonies
what is the problem with the technique of culturing bacteria to estimate species
- some bacteria aren’t easily cultured
- viable count cultures fewer cells
- dormant bacteria
- some species fastidious /grow easier suggesting more abundant
- 50% oral bacteria isolated
what is culture independent microbial analysis
based on the comparison of DNA sequences from different bacteria
what are the 2 ways culture independent microbial analysis works
sequencing of the 16S to work out the species present or sequences the whole DNA to work out gene functions
does culture independent microbial analysis require isolation of the organism
no
what does PCR do
looks at all bacteria, may find ‘new’ species
what does hybridisation do
quantifies sequences already discovered
what does next generation sequencing do and how
identifies all DNA present
- target (16S rRNA ‘microbiome’ analysis) OR Full sequence (‘metagenomics’)
does saliva have bacteria in when secreted
no, its sterile when secreted and accumulates bacteria after
are there more bacteria attached to epithelial cells or free in saliva
3 times more attached to epithelial cells
how are bacteria removed from oral surfaces
sloughing of epithelial cells mechanical debridement active release (possibly)
what are the limitation of sampling saliva as a reflection of the overall oral microbiome
- proportions of microbial species are different from plaque/soft tissue biofilms
- care is required when sampling to ‘standardise’
what microbiome is present in almost everyone
core microbiome of 13 phyla
what microbiome is present in some and not others
peripheral microbiome
what are clusters of the microbiomes
associated with differences in metabolome
what is the main source of the enamel pellicle
saliva
what is the difference between saliva and enamel pellicle
they have the same organisms but in different proportions
how can salivary compounds help to control plaque accumulation
through:
- aggregating bacteria which are then swallowed
- antimicrobial effects
why is saliva important for bacteria
its a key nutrient for them
what are the antimicrobial components of saliva
cystatins VEGh Lactoperoxidase Lysozyme Chitinase Histatins Defensins Lactoferrin Calprotectin
what are the microbial adhesion components of saliva
Gp340 Mucins PRPs Amylase Statherin S-lgA
what are the surface protection and maintenance components of saliva
mucins ca2+ phosphate bicarbonate PRPs statherin
what are some salivary molecules(proteins) that bind to bacteria
MG2 (muc7)
Salivary Agglutinin (gp340), PRPs
Statherin
what do the salivary molecules do
bind to bacteria and teeth
agglutinate or inhibit bacteria
promote or inhibit microbial colonisation
how have bacteria adapted to survive in the mouth
by sticking to the salivary pellicle
when does aggregation/agglutination occur and what does it result in
in the liquid phase
results in large clumps which adhere poorly and are swallowed
how do bacteria adhere
due to proteins in the saliva pellicle and adhesion of bacterial cells to teeth
what are immunoglobulins and what do they do
a key feature of the immune system and are present in saliva, they agglutinate bacteria
what is the rate of secretory IgA at rest and stimulated flow
33mg/100mL resting flow
6mg/100mL stimulated
what are the immunoglobulins present in gingival fluid and what do they do
IgG, IgM
they activate complement/opsonisation
what are the three modes of gp340 recognition
aggregation and adherence
aggregation «_space;adherence
aggregation»_space; adherence
what are proline-rich proteins (PRPs)
host receptors which are acidic/basic/glycosylated proteins
where are PRPs found
high conc in parotid and submandibular saliva
what is the main function of PRPs
calcium phosphate stabilisation
what is the c-term for PRPS
a cryptitope- becomes an epitope after change in structure allowing antibodies to bind
what does the N-term in PRPs bind
hydroxyapatite
what does the C-term in PRPs bind
- Actinomyces spp.
- Streptococcus mutans
- Streptococcus sanguinis
what is statherin and its function
host receptor thought to be involved in calcium phosphate stabilisation (with PRPs)
what does statherin bind
hydroxyapatite, porphyromonas gingivalis and actinomyocytes spp.
when does statehrin not bind bacteria
when in the soluble state- only when its stuck to the surface
what are the important antibacterial enzymes in saliva that inhibit bacterial growth
lysozyme
lactoperoxidase
lactoferrin
what do lysozymes do
cleaves bacterial cell wall peptidoglycan, can cause non enzymatic cell degradation triggering autolysis when not active
what does lactoperoxidase do and what are reaction products
targets peroxide produced bacteria. producing hypothiocyanite plus some cyanosulphurous acid and cyanosulphuric acid
what is the acid base eqm in the thiocynate reactions
HOSCN->
what effect the does the pK for HOSCN/OSCN- being 5.3 have on the reaction and what does this do to bacteria
more acid favours HOSCN which penetrates bacterial cell envelopes
what produces lactoperoxidase
produced by host and bacteria
what does lactoferrin do
binds iron and makes it unavailable and some bacteria produce iron-binding proteins called siderophores to complete for host iron
which toothpastes contain components of saliva
those targeted to specialist markets
- dry mouth
- pets
- children
what dental product contains lysozyme, lactoperoxidase, and lactoferrin
BioXtra toothpaste
what dental product contains a dual enzyme system
Biotene toothpaste
what are the tooth surfaces available for colonisation
fissure
smooth surfaces
approximal
gingival crevice
what are the characteristics of supragingival plaque
present in health
mainly aerobic
fairly easily removed from smooth surfaces
what is the nutrient source for supragingival plaque
saliva
what are the characteristics of subgingival plaque
periodontal pockets become anaerobic
significant plaque associated with gingivitis/periodontitis
difficult to remove
what is the nutrient source for subgingival plaque
gingival crevicular fluid
what are the environmental factors affecting dental plaque accumulation
diet/smoking
what are the host factors affecting dental plaque accumulation
saliva amount/composition
what are the bacterial factors affecting dental plaque accumulation
adhesins that recognise pellicle/congregation
how fast does dental plaque start to accumulate and how
within mins of tooth cleaning, faster at day than night.
pioneer colonisers attach to saliva pellicle
what binds to the pellicle
only selective organisms due to receptors on its surface
how to bacteria attach to teeth
primary colonising bacteria attach to the pellicle (the conditioning layer)
what are the characteristics of the enamel pellicle
1-3 micro metres thick (exceptionally 10)
may permeate the outer layer of enamel
not easily removed
deposit of saliva proteins
how does the pellicle form
precipitation of denatured salivary proteins
selective adsorption of salivary proteins: molecules bind in proportion to their affinity for a substrate
where do additional components in the formation of the pellicle originate from
GCF
oral mucosa
microbial cells
what is the importance of the pellicle
lubricant-reduce tooth wear
bicarbonate-buffer
reduces calculus formation
reduces mobility of calcium and phosphate ions
prevents inappropriate crystal growth (statherin and PRP)
active enzymes
what is the importance of the pellicle reducing the mobility of calcium and phosphate ions
diffusion barrier and binding to PRP
reduces enamel demineralisation (erosion and caries)
what is the importance of the pellicle preventing inappropriate crystal growth
Statherin and PRP
ensuring hydroxyapatite crystal doesn’t dissolve but also that we don’t want more on top
what active enzymes does the pellicle contain
amylase-receptor for bacteria lysozyme peroxidase glucosyltransferase-produced by bacteria carbonic anhydrase
what inhibits s.mutans biofilm formation
mucin MG1
what salivary proteins in the pellicle act as receptors for bacteria
MG1 amylase PRP Statherin Gp340 (salivary agglutinin)
what are the 4 main types of human oral streptococci
mitis
anginosus
salivarius
mutans
what are mitis group streptococci
most numerous
what are anginosus group streptococci
generally commensal but are associated with abscesses
what are salivarius group streptococci
generally commensal (some investigated as probiotics)
what are mutans group streptococci
associated with dental caries
what is antigen I/II
large protein on the surface of many oral streptococci (binds bacteria)
what does antigen I/II do
binds to receptors in the pellicle
what does antigen I/II mediate
adhesion to salivary agglutinin gp340 in fluid phase or in pellicle
what are the multi domain proteins on antigen I/II
N-terminal domain Alanine-rich repeats Variable region Proline-rich repeats Carboxy-terminal domain, containing motif for wall anchoring
what is actinomyces spp.
gram positive pleimorphic rods
facultative anaerobes
mostly harmless, can cause disease
interact with streptococci and colonise surfaces
what are examples of actinomyces spp.
A. naeslundii, A. oris, A. israelii
what is veillonella spp.
gram negative cocci
strict anaerobes
feed on lactate streptococci produce .
elevated caries
what are examples of veillonella spp.
V.atypica, V.dispar
how does dental plaque form
adhesion to salivary pellicle coaggregation -> growth coadhesion mature biofilm dispersal
what are the characteristics of mature supragingival dental plaque
contains 10^11 microbial cells/gram stratified appearance (gram-positive cocci and short rods at tooth surface; filaments towards outer layers)
what problems can mature supragingival dental plaque cause
caries follows a shift towards acidogenic/aciduric bacteria
gingivitis occurs when plaque grows below the gum line
what happens when there is failure to control dental plaque
accumulation of plaque at gum margins directly irritates gum tissue, or form calculus which in turn irritates the gums
gingivitis -> periodontitis
roughly how many bacteria are in the subgingival crevice
relatively few
10^3 to 10^6 CFU/crevice
what bacteria are found in the subgingival crevice
anaerobic bacteria (found here or on dorsal surface of tongue) asaccharolytic, proteolytic bacteria, but not the same as in perio disease
what are the characteristics of fusobacterium nucleatum
gram negative, proteolytic, anaerobic, long rod-shaped cells
Can be present in high numbers in subgingival plaque
what does fusobacterium nucleatum coaggregate with
early colonisers (e.g. Streptococcus spp.) and late colonisers (e.g. T.denticola)
what is dental calculus
mineralised plaque
what is supragingival calculus a deposit from
saliva
what is subgingival calculus is a deposit from
serum
what is subgingival calculus also known as
serumnal calculus
what do rough surfaces of calculus trigger
inflammation -> gingivitis -> periodontitis
what are the 2 types of calculus
gross, very gross
where does calculus form
preferentially near salivary duct openings
what is the epitactic agent in calculus formation
probably a bacterium
where do sialoliths form and how
in salivary ducts
Supersaturated calcium phosphate
High pH
what is an important bridging organism between early and late colonisers
F.nucleatum
what are the types of caries
anatomicals sites primary vs recurrent caries residual caries cavitated vs non cavitated active vs inactive
what are the anatomical sites of caries
pits and fissures, smooth surfaces (enamel caries or root caries, which starts on exposed cementum/dentin)
what is recurrent caries
occurs after treatment/restoration
what is residual caries
insufficient treatment
what appears in early non cavitated caries
white spot lesion
what is early childhood caries
the presence of one or more decayed (non-cavitated or cavitated lesions), missing (due to caries) or filled tooth surfaces in any primary tooth in an age between birth and 71 months of age
what are the theories that caries is the result of microbial sugar fermentation
worms chymical theory parasitic theory chemico-parasitic theory (most important) proteolytic theory proteolysis-chelation theory
what are the 2 stages of the chemico-parasitic theory (chemical and bacteria)
1- decalcification of enamel
2- dissolution of enamel
what is the chymical theory
food putrefaction released unidentifued chemical agent which dissolved teeth
what is the parasitic or septic theory
filamentous parasite in plaque responsible
what is the proteolytic theory
microbes invade enamel lamellae and initiate caries by proteolysis
what is the proteolysis-chelation theory
microbial proteolytic destruction of the organic matrix
what is the ecological plaque hypothesis
disease as an imbalance
what is the specific plaque hypothesis
caries aetiology
what are the bacteria commonly associated with caries
mutans streptococci
lactobacillus spp.
actinomyocenes spp.
bifidobacterium spp. and related
what are the virulence factors for bacteria linked to caries
acid production from sugars acid tolerance intracellular storage granules extracellular polysaccharides adhesins
what are the mutans streptococci found in humans
s. mutans
s. sobrinus
streptococci is broken down into 4 groups, one is the mutans streptococci
wha are the characteristics of the mutans streptococci
gram-positive, catalase-negative, saccharolytic, facultive anaerobes
which mutans streptococci is generally more acidogenic and adherent
s.sobrinus (less frequently carried)
what are non-mutans low-pH streptococci
a typical member of other species
why can koch’s first postulate not be applied in the case of bacteria associated with dental caries
microbes present in healthy individuals
even if you measure the amount of organisms present how do you do this? saliva will always be present and culture based approaches cannot distinguish between s.mutans and s.sobrinus
in a longitudinal study which cultured bacteria with early childhood caries, what were the bacteria most associated
s.mutans
scardovia wiggsiae
anaerobic, pleemorphic gram positive bacilli
what do sacchorytic bateria produce
acetic and lactic acid
what are the virulence factors of mutans streptococci
adhesins
acid production
acid resistance
what are the adhesins important in mutans streptococci important for colonisation
antigen I/II protein
glucosyltranferases (GTFs)
glucan binding proteins
what is involved in acid producing virulence factors in mutans streptococci
F-ATPase
what is involved in acid resistance (acidurity) in mutans streptococci
dna repair proteins
protective membrane proteins
what are the health promoting factors of non-mutans streptococci
adhesins of commensal bacteria - antigen I/II protein (streptococci)
alkali production
how can carbohydrates be utilised by caries associated bacteria
acid production
high energy bond in sucrose harnessed to produce polysaccharide
why is sucrose more cariogenic than glucose
only sucrose leads to the production of glucans therefore is more cariogenic
how do sugars get into bacterial cells e.g polysaccharides
transporters
polysaccharides can be digested
mon/disaccharides can be imported
why does xylitol import into cells lead to a futile cycle
its gets phosphorylated then dephosphorylated which can drain strep of energy and inhibit it
how is sugar uptake into cells regulated in high sugar
lactate is the major product and glycolysis is accelerated
IPS are made
how is sugar uptake into cells regulated in low sugar
mixed acid fermentation- lactate hydrogenase is inhibited
IPS are degraded
why is O2 an important regulator if fermentation
it inhibits pyruvate formate lyase
what is the importance of intracellular polysaccharides in bacterial cells
storage
glycogen-type glucan
broken down and used for glycolysis in starvation
(produced via glucose-1-phosphate when carbs in excess)
what is the importance of food webs in bacterial cells
bacteria rarely work in isolation
end products of metabolism can be recycled by other bacteria
several different bacteria na utilise lactate, lactate helps strep mutans
what does preacidification result in
greater acid tolerance, particularly in bacteria that are relatively acid sensitive
what are the mechanisms of acid adaptation
reduced permeability of cell membranes to H+
induction of H+ translocating ATPase (expels protons from cells)
induction of alkali production systems (arginine deiminase or urease)
induction of stress proteins that protect enzymes and nucleic acids from denaturation
what are the 2 ways we can make alkali in the mouth
arginine deaminase pathway
urease pathway
when is salivary deaminase and urease higher
in caries free subjects
whats involved in the plaque biofilm matrix
macromolecules and smaller molecules that may be trapped within the matrix
what are the macromolecules in the plaque biofilm matrix
polysaccharides
proteins
nucleic acids
what are the small molecules in the plaque biofilm matrix
nutrients
metals
signalling molecules
water channels
what are the 2 basic exopolysaccharides and what are they made by
glucans- glucosyltransferase
fructans- fructosyltransferase
what are expopolysaccharides made from
sucrose outside the cell
what are expopolysaccharides responsible for on sucrose containing agar
crystalline colony appearance
why is sucrose the substrate for expopolysaccharides
high energy in the glycosidic bond between the disaccharide
what can the energy released from glycosidic bonds be used for
to synthesis polymers
what do anomeric carbons give rise to
isomers
what are the types of fructan polymers
inulins (beta-2,1 bond type)- 96%
levans (beta-2,6 bond type)- 5%
what are fructan polymers (inulins) synthesised by
strep.mutans and some strains of strep.salivarius
what are fructan polymers (levans) made by
strep. sanguinis
strep. salivarius
actinomycesnaeslundii
some strep sobrinus
what are fructan polymers (levans) not made by
strep mutans
what are the two basic types of glucan polymers
water insoluble (mutan)- alpha 1,3 linked water soluble (dextran)- alpha 1,6 linked
what is water insoluble (mutan) formed from
strep sobrinus
what are water soluble (dextran) formed from
strep salivarius