Metabolism Flashcards

1
Q

Metabolism

A

“The whole range of biochemical processes that occur within a living organism.”

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2
Q

Functions of metabolism

A
  • providing energy for cells via high energy electrons with a negative redox potential
  • providing reductive power for anabolic processes via high energy electrons
  • providing carbon to build cellular components
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3
Q

Where does all energy come from?

A

the sun

  • the gas in plasma formed in the sun goes through fusion, creating energy for plants
  • this allows for plants to synthesise macromolecules including glucose and oxygen (photosynthesis)
  • catabolic reaction
  • macromolecules oxidised to produce ATP
  • ATP can then drive biosynthetic reactions
  • as long as there is oxygen in the sun, the energy transfer is continuous
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4
Q

What is this energy used for?

A
  • With energy from the sun, plants can synthesise macromolecules
  • This is an example of a catabolic pathway, in which the macromolecules are oxidised to produce ATP
  • This ATP can then go on to drive biosynthetic reactions
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5
Q

Which two types of reactions make up metabolism?

A

Catabolism and anabolism

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6
Q

Catabolism

A
  • Large complex organic molecules are broken down into smaller molecules
  • Degradative
  • Oxidative (mostly oxygen is lost)
  • Energy released (ATP)
  • there is energy bonds being broken and so there must be energy being liberated
  • Converging (all protein and fat is made into carbon dioxide)
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7
Q

Anabolism

A
  • Small molecules are constructed to for larger complex organic molecules
  • disordered to ordered
  • Biosynthetic
  • Reductive
  • Requires energy
  • Diverging
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8
Q

Oxidation - reduction reactions

A
  • redox (electrons are transferred from one molecule to another)
  • OIL RIG (Oxidation is loss, reduction is gain)
  • As one molecule is oxidised (loses an electron), another is reduced (gains an electron) and so are called a ‘redox pair’
  • reduced compound is called a reducing agent because it causes the reduction of compound B
  • oxidised compound is called oxidising agent as it causes oxidation of compound A
  • oxidised compound becomes reduced
  • reduced compound becomes oxidised
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9
Q

Most reduced state of carbon

A

Methane

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10
Q

Most oxidised state of carbon

A

Carbon Dioxide

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11
Q

The steps of glucose oxidation

A
  • change in free energy, if this decreases then will become oxidised and energy will be released
  • The activation energy is reduced so that the reaction can occur at the optimum temperature of 37° C
  • The released free energy is reduced – this can be coupled to endergonic reactions and does not damage the cell
  • Convenient control points are provided
  • Can be integrated with other cellular metabolism
  • the first few stages the energy is increased, decreasing the stability of the bonds
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12
Q

Electron flow in chemotrophs

A
  • chemotrophs obtain the energy of other cells
  • Organic compounds, such as carbohydrates, amino acids and lipids, are oxidised to release high energy electrons
  • Organic cofactors act as electron carriers
  • NAD+ + 2H+ is reduced to NADH + H+
  • FAD + 2H+ is reduced to FADH2
  • A terminal electron acceptor is reduced aerobically: O2 → H2O
  • the electron acceptor is oxygen which is reduced to water
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13
Q

Enzymes

A
  • Proteins
  • Biological catalysts that facilitate the conversion of a substrate into a product
  • Often require co-enzymes, e.g. ATP
  • Are present in most chemical reactions in cells
  • The name of an enzyme is derived from its substrate and its action: substrate action-ase
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14
Q

Oxidoreductase

A
  • all enzymes catalysing oxido-reductions

- e.g. alcohol dehydrogenase

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15
Q

Transferases

A
  • transfer a group onto a substrate

- e.g. UMP kinase

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16
Q

Hydrolases

A
  • catalyse the hydrolysis of various bonds

- e.g. aminoacyl-tRNA hydrolase

17
Q

Lyases

A
  • cleave C-C, C-O, C-N and other bonds by other means than by hydrolyses or oxidation
  • e.g. pyruvate decarboxylase
18
Q

Isomerases

A
  • catalyse changes within one molecule

- e.g. DNA topoisomerase

19
Q

Ligases

A
  • catalyse the joining of two molecules with concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate
  • e.g. DNA ligase (ATP)
20
Q

Enzyme which transfers phosphate groups

A
  • kinase

- e.g phosphofructokinase

21
Q

Enzyme which rearranges the molecule

A
  • isomerase

- e.g. isomerase

22
Q

Enzyme which makes a molecule from parts

A
  • synthase

- e.g. ATP synthase

23
Q

Enzyme which removes hydrogen

A
  • dehydrogenase

- e.g. isocitrate dehydrogenase

24
Q

Enzyme which removes phosphate from a protein

A
  • phosphatase

- e.g. dual specificity phosphatase

25
Q

Oxidation states of carbon

A
  • depending on what the carbon atom is joined to, it can be in a reduced or oxidised state
  • general rule: the smaller the compound the more oxidised and lower free energy
  • alkane (fats) > alcohol (carbohydrates) > aldehyde > carboxylic acid > carbon dioxide (final product of metabolism)
26
Q

Is it possible to get all 94 glucose molecules from a cell?

A

Yes, but not in nature.
To get all 94 glucose molecules from a cell, it would require combustion which is not possible, this is too much energy being applied to the cell and would cause unwanted reactions, damage, breaks, stable bonds to break.