Metabolism Flashcards
Catabolism
Breaks down molecules to release energy and reducing power
Anabolism
Uses energy, reducing power and raw materials to make molecules for growth and maintenance
LO 1.1 Define and give approximate values to the components of your daily energy expenditure
Assuming moderate physical activity, daily expenditure:
70kg Adult Male ~ 12,000kJ
58kg Adult Female ~ 9,500kJ
Daily energy expenditure has three components:
- Energy to support our basal metabolism – Basal Metabolic Rate
- Energy for voluntary physical exercise
- Energy we require to process food we eat (diet-induced thermogenesis)
LO 1.2 List the essential components of the diet and explain why they are essential
Fats - Not essential as an energy source, but energy yield is 2.2 times greater than that from carbohydrates and proteins. They are necessary to absorb fat-soluble vitamins (A, D, E & K). Essential fatty acids, eg linoleic and linolenic acids are structural components of cells membranes and precursors of important regulatory molecules (eicosanoids)
Proteins - Amino acids, the product of digestion of proteins are used in the synthesis of essential N-containing compounds (eg creatine, nucleotides and haem). ~35g/day of protein is degraded and excreted in the urine as urea. To maintain nitrogen balance (N2 intake = N2 loss), an adult male has an average daily requirement of ~35g of protein. Essential Amino Acids that cannot be synthesised in the body come from dietary protein.
Carbohydrates - The major energy-containing component of the diet (17kJ/g)
Water An adults body weight is ~ 50-60% water (Child ~70%, Elderly/Obese ~ 50%). The average water loss is ~ 2.5 litres/day. It is lost in the urine (~ 1,500ml), expired air (~ 400ml), skin (~ 500ml) and faeces (~ 100ml). Cellular metabolism produces some water (~350ml) and the rest is replaced by drinking.
Fibre - Non-digestible plant material for normal bowel function e.g. cellulose
Minerals and Vitamins – Are either water-soluble or lipid-soluble. Deficiency diseases associated with the absence/excess of these.
LO 1.3 Explain the clinical consequences of protein and energy deficiency in man
Starvation in adults leads to loss of weight due to loss of subcutaneous fat and muscle wasting. They complain of cold and weakness. Infections of the GI tract and lungs are common.
Marasmus – Protein-energy malnutrition due to overall lack of nutrients (carbs and proteins) most commonly seen in children under the age of 5. The child looks emaciated with obvious signs of muscle wasting and loss of body fat although there is no oedema. Hair is thin and dry, diarrhoea is common and anaemia may be present.
Kwashiorkor – occurs typically in a young child displaced from breastfeeding by a new baby and fed a diet with some carbohydrate but a very low protein content. The child is apathetic, lethargic and anorexic (loss of appetite). The abdomen is distended owing to hepatomegaly and/or ascites (accumulation of fluid in the peritoneal cavity). There is generalised oedema due to low serum albumin (osmotic pressure). Anaemia is common.
LO 1.4 Determine the Body Mass Index of a Patient and interpret the value
BMI = Weight (kg)/Height(m)^2
Underweight = 35
LO 1.5 Define obesity and describe the factors involved in regulation of body weight
Obesity – Excess body fat has accumulated to the extent that it may have an adverse effect on health (BMI > 30), leading to reduced life expectancy and/or increased health problems. Body weight is determined by the difference between input of substances into the body and output of substances and energy from the body.
LO 1.6 Define homeostasis and explain its importance
Homeostasis is the maintenance of a stable internal environment. A dynamic equilibrium. Homeostatic mechanisms act to counteract changes in the internal environment. Homeostasis occurs at all levels: cellular, organ/system and whole body.
Controls supply of nutrients, oxygen, blood blow, body temperature, removal of waste, removal of CO2 and pH.
Homeostasis underpins physiology and failure of homeostasis leads to disease.
LO 2.1 Define cell metabolism and explain its functions
Cell metabolism is defined as the highly integrated network of chemical reactions that occur within cells. The network consists of a number of distinct chemical pathways (metabolic pathways) which link together. Some pathways occur in all cells whilst others are confined to cells with specific functions.
Cells metabolise nutrients to provide:
- Energy for cell function and the synthesis of cell components (ATP)
- Building block molecules that are used in the synthesis of cell components needed for the growth, maintenance, repair and division of the cell.
- Organic precursor molecules that are used to allow the inter-conversion of building block molecules (eg acetyl CoA)
- Biosynthetic reducing power used in the synthesis of cell components (NADPH)
LO 2.2 Describe the origins and fates of cell nutrients
Cell nutrients in the blood come from a variety of sources:
- The diet
- Synthesis in body tissues from precursors
- Released from storage in body tissues
They are transported to body tissued to be metabolised:
- Degredation to release energy – all tissues
- Synthesis of cell components – all tissues except RBCs
- Storage – Liver, adipose tissue, skeletal muscle
LO 2.3 Describe the relationship between catabolism and anabolism
Cell metabolism consists of pathways in which the overall reaction is the breakdown of larger molecules into smaller ones (Catabolism) linked to those in which smaller molecules are built up into larger ones (Anabolism).
In general:
Catabolic Pathways:
– Large -> Small
– Oxidative. Release H+ ions (reducing power)
– Releases large amounts of free energy (some conserved as ATP).
– Produces intermediary metabolites
Anabolic Pathways:
- Small -> Large
- Reductive. Use H+ ions.
- Use the intermediary metabolites and energy (ATP) produced by catabolism to drive the synthesis of important cell components.
LO 2.4 Explain why cells need a continuous supply of energy
All cells need energy to function. As a whole each person’s body requires a certain amount of energy to maintain this function. If energy intake from food is insufficient for this, the body utilises energy stores to keep the supply of energy continuous.
LO 2.5 Explain the biological roles of ATP, creatine phosphate and other molecules containing high energy of hydrolysis phosphate groups
Metabolism is all about coupling the energy released from exergonic reactions to the energy required by endergonic reactions. An intermediate process is required – the ADP/ATP cycle.
Exergonic – Energy releasing (Gibbs Free Energy –‘ve)
Phosphorylated Compounds
Many of these compounds have a high energy of hydrolysis
Phosphoenolpyruvate G = -62 kJ.mol=1
Creatine phosphate G = -43 kJ.mol=1
ATP G = -31 kJ.mol=1
The phosphate-phosphate bond is a high-energy bond. ATP4- + H2O ADP3-+HPO42- + H+ • ATP + H2O ADP + Pi Change in G = -31 kJ.mol-1 • ADP +H2O AMP + Pi Change in G = -31 kJ.mol-1
Creatine Phosphate
Some cell types, such as muscle, need to increase metabolic activity very quickly. Therefore they need a reserve of high energy stores that can be used immediately.
Creatine + ATP Creatine Phosphate + ADP
This reaction is catalysed by creatine kinase
When ATP concentration is high, the forward reaction is favoured (vice versa)
LO 2.6 Explain the roles of redox reactions and H-carrier molecules in metabolism
Oxidative reactions when electrons are removed. In biological terms it’s the removal of Hydrogen atoms (H+ and e-). Removed Hydrogen atoms immediately react with something else, making the reactions REDOX.
When fuel molecules are oxidised, hydrogen atoms are transferred to carrier molecules (catabolism). These carry reducing power to other (anabolic) reactions.
Carriers are complex molecules that contain components from vitamins (B vitamins).
Carriers are reduced by the addition of two H atoms (H+ + e-). The H+ dissociates in solution.
The total number of oxidised and reduced carriers is always constant.
Carrier -> Oxidised form ->Reduced form
Nicotinamide adenine dinucleotide -> NAD+ -> NADH + H+
Nicotinamide adenine dinucleotide phosphate -> NADP+ -> NADPH + H+
Flavin adenine dinucleotide ->FAD ->FAD2H
LO 2.7 Explain the roles of high and low-energy signals in the regulation of metabolism
Catabolic pathways are generally activated when the concentration of ATP falls and the concentrations of ADP/AMP increase.
Anabolic pathways tend to be activated when the concentration of ATP rises.
ATP is known as a high-energy signal because it signals that the cell has adequate energy levels for its immediate needs. NADH, NADPH and FAD2H are also high-energy signals, as high concentrations of these molecules mean reducing power is available for anabolism.
ADP/AMP are low-energy signals because they signal the opposite. NAD+, NADP+ and FAD are low energy signals, as high concentrations of these molecules means little reducing power is available for anabolism.
LO 2.8 Describe the general structures and functions of carbohydrates
Monosaccharides
These can contain from 3 to 9 C-atoms but are most commonly trioses, pentoses and hexoses. They are either ‘aldoses’ (from glyveraldehyde) or ‘ketoses’ (from dihydroxyacetone). All monosaccharides, except dihydroxyacetone contain asymmetrix C-atoms therefore can exist in D (naturally occurring) or L form.
Monosaccharides exist largely as ring structures in which the aldehyde/ketone group has reacted with an alcohol group in the same sugar to form a hemiacetal ring.
The ring structure has a new chiral carbon at C1 of an aldose (C2 for ketose). This is known as the anomeric C-atom and can have two forms: or .
Enzymes can distinguish between these two structures.
Sugars have a number of important physico-chemical properties:
- Hydrophillic – water soluble, do not readily cross cell membranes
- Partially oxidised – need less oxygen than fatty acids for complete oxidation.
Disaccharides
Disaccharides are formed by the condensation of two monosaccharides with the elimination of water and formation of an O-glycosidic bond. The major dietary disaccharides are sucrose (glucose-fructose) and lactose (galactose-glucose). In addition, maltose (glucose-glucose) is produced during the digestion of dietary starch. Disaccharides can be non-reducing if the aldehyde or ketone groups of the two sugars are both involved in the forming the glycosidic bond.
Polysaccharides
Polysaccharides are polymers of monosaccharide units linked by glycosidic bonds.
Most are homo-polymers made by the polymerisation of one type of monosaccharide.
Glucose Polysaccharides:
Glycogen is a polymer of glucose found in animals. The glucose units joined together in -1,4 and -1,6 glycosidic linkages (10:1). Glycogen is highly branched.
Starch is found in plants. It contains amylose (-1,4 linkages) and amylopectin (-1,4 and -1,6 linkages). Starch can be hydrolysed to release glucose and maltose in the human GI tract.
Cellulose is found in plants where it has a structural role. Glucose monomers are joined by -1,4 linkages to form long linear polymers. A healthy human diet contains plenty of cellulose for fibre, but humans do not posses the required enzymes to digest -1,4 linkages.
LO 2.9 Describe how dietary carbohydrates are digested and absorbed
Dietary Polysaccharides Dietary polysaccharides (starch & glycogen) are hydrolysed by glycosidase enzymes. This releases glucose, maltose and leaves smaller polysaccharides (dextrins). This begins in the mouth with salivary amylase and continues in the duodenum with pancreatic amylase.
Dietary Disaccharides
Digestion of maltose, dextrins and dietary disaccharides lactose and sucrose occurs in the duodenum and jejunum. The glycosidase enzymes involved are large glycoprotein complexes that are attached to the brush border membrane of the epithelial cells lining these regions.
The major enzymes are lactase, glycoamylase and sucrase/isomaltase.
They release the monosaccharides glucose, fructose and galactose.
Low activity of lactase is associated with a reduced ability to digest the lactose present in milk products and may produce the clinical condition of lactose intolerance.
LO 2.10 Explain why cellulose is not digested in the human gastrointestinal tract
In the glucose polymer cellulose, glucose monomers are joined together by -1,4 glycosidic linkages. Humans do not posses the enzyme to digest these linkages.
LO 2.11 Describe the glucose-dependency in some tissues
All tissues can remove glucose, fructose and galactose from the blood. However the liver is the major site of fructose and galactose metabolism. Gluose concentration in the blood is normally held relatively constant. This is because some tissues have an absolute requirement for glucose and the rate of glucose uptake is dependant on its concentration in the blood.
The minimum glucose requirement for a healthy adult is ~180g/day:
- ~ 40g/day is required for tissues that only use glucose
Eg RBCs, WBCs, kidney medulla and lens of the eye
- ~ 140g/day is required by the CNS as this prefers glucose
- Variable amounts are required by tissues for specialised functions
Eg synthesis of triacylglycerol in adipose tissue, glucose metabolism provides the glycerol phosphate.
LO 2.12 Describe the key features of glycolysis
Glycolysis is the central pathway in the catabolism of all sugars. It consists of 10 enzyme-catalysed steps that occur in the cell cytoplasm. It is active in all tissues and functions to generate:
- ATP for cell function. (Only pathway to generate ATP anaerobically)
- NADH from NAD+
- Building block molecules for anabolism
- Useful intermediates for specific cell functions (C3)
- The starting material, end products and intermediates are C3 or C6.
- There is no loss of CO2
- Glucose is oxidised to pyruvate and NAD+ is reduced to NADH
- Overall is exergonic with a –‘ve G value
- All intermediates are phosphorylated and some have a high enough phosphoryl group transfer potential to form ATP from ADP (substrate level phosphorylation).
- 2 moles of ATP are required to activate the process. This is an energy investment to make glucose a little bit unstable in order to carry out reactions on it. 4 moles of ATP are produced to give a net gain of 2 moles of ATP.
Steps 1, 3 and 10 are irreversible.
- Step 1 is catalysed by Hexokinase (in the liver glucokinase)
- Step 3 is catalysed by Phosphofructokinase-1
- Step 10 is catalysed by Pyruvate kinase
LO 2.13 Explain why lactic acid (lactate) production is important in anaerobic glycolysis
When the oxygen supply is inadequate or in cells without mitochondria, Pyruvate is reduced to lactate by the enzyme lactate dehydrogenase (LDH).
2 Pyruvate + 2 NADH + 2 H+ 2 Lactate + 2 NAD+
Under these conditions the overall equation for the 11 steps of anaerobic glycolysis is:
Glucose + 2 Pi + 2 ADP 2 Lactate + 2 ATP + 2H2O
The produced lactate is released into the circulation where it is converted back to Pyruvate and oxidised to CO2 (heart muscle) or converted to glucose (liver).
LDH increases NAD+ concentrations under anaerobic conditions for Glycolysis to proceed
LO 2.14 Explain how the blood concentration of lactate is controlled
Normally the amount of lactate produced equals the amount of lactate utilised.
Plasma lactate 5mM does this cause a problem, as it exceeds the renal threshold and it begins to affect the buffering capacity of the plasma causing lactic acidosis.
LO 2.15 Explain the biochemical basis of the clinical conditions of lactose intolerance and galactosaemia
Lactose Intolerance
Low activity of the enzyme lactase, meaning that one of the main dietary glucose disaccharides, lactose, cannot be digested. Dietary lactose is hydrolysed by lactase to release glucose and galactose.
Galactosaemia
Galactose metabolism takes place largely in the liver by soluble enzymes catalysing the following reactions
Overall Reaction:
Galactose + ATP Glucose 6-phospate + ADP
Lactose intolerance can affect Galactose metabolism as lactose metabolism releases Glucose and Galactose
In Galactosaemia individuals are unable to utilise galactose obtained from the diet because a lack of Galactokinase or Galactose 1-phosphate uridyl transferase. The absence of the kinase enzyme is relatively rare and is characterised by accumulation of galactose in tissues. The absence of the transferase is more common and more serious as both galactose and Galactose 1-Phosphate (which is toxic to the liver) accumulate in tissues.
Accumulation of galactose in tissues leads to its reduction to Galactitol (aldehyde group reduced to alcohol group) by the activity of the enzyme aldose reductase.
This reaction depletes some tissues of NADPH.
In the eye the lens structure is damaged (cross-linking of lens proteins by S-S bond formation causing cataracts. Un addition there may be non-enzymatic glycosylation of the lens protein because of high galactose concentration. This may also contribute to cataract formation.
The accumulation of Galactose and Galactitol in the eye may lead to raise intra-ocular pressure (glaucoma) which if untreated may cause blindness.
Accumulation of Galactose 1-phosphate in tissues causes damage to the liver, kidney and brain and may be related to the sequestration of Pi making it unavailable for ATP synthesis.
LO 3.1 Explain why the pentose phosphate pathway is an important metabolic pathways in some tissues
The pentose phosphate pathway is an important pathway in the liver, RBCs and adipose tissue. Its major functions are:
o Produce NADPH in the cytoplasm
- Reducing power for anabolic processes such as lipid synthesis
- In RBCs maintains free –SH groups on cysteine residues
- Used in various detoxification mechanisms
o Produce C5 ribose for the synthesis of nucleotides. The pathway therefore has a high activity in dividing tissues.
The pathway is oxidative, producing no ATP and some CO2.
Phase I
Glucose 6-phosphate is oxidized and decarboxylated (oxidative decarboxylation) by the enzyme glucose 6-phosphate dehydrogenase and 6-phosphogluconate dehydrogenase in a reaction requiring NADP+.
Glucose 6-phosphate + 2 NADP+ C5 sugar phosphate + 2NADPH + 2H+ + 2CO2
Phase II
This complex series of reactions converts any unused C5-sugar phosphates to glycolysis intermediates
3C5-sugar phosphate 2 fructose 6-phosphate and glyceraldehyde 3-phosphate
The pentose phosphate pathway is important as it produces NADPH that has biosynthetic reducing power. It is used in functions such as lipid synthesis, therefore the pathway is important in liver and adipose tissues.
RBCs require the reducing power of NADPH to prevent the formation of disulphide bridges and the aggregation of RBCs (Heinz bodies).
LO 3.2 Describe the clinical condition of glucose 6-phosphate dehydrogenase deficiency and explain the biochemical basis of the signs and symptoms
Glucose 6-phoshate dehydrogenase is the rate-limiting enzyme in the pentose phosphate pathway, used to increase NADPH concentration. Deficiency in this enzyme is caused by a point mutation in the X-linked gene coding for the enzyme. The mutation results in reduced activity of the enzyme and therefore low levels of NADPH.
The structural integrity and functional activity of proteins in RBCs depends on free –SH groups. –SH groups tend to form disulphide bridges unless prevented by NADPH.
In G6PD deficiency the NADPH levels are sometimes too low to prevent the formation of these disulphide bridges. Haemoglobin and other proteins then become cross-linked by disulphide bonds to form insoluble aggregates called Heinz bodies. This leads to premature destruction of the RBCs (haemolysis).
LO 3.3 Explain the key role of Pyruvate dehydrogenase in glucose metabolism
Pyruvate does not enter stage 3 of catabolism directly; instead it is converted to Acetyl~CoA. The enzyme responsible for this is Pyruvate dehydrogenase (PDH) a multi-enzyme complex.
The PDH reaction is irreversible in the cell. This means that the loss of CO2 from Pyruvate is irreversible and Acetyl~CoA cannot be converted back to Pyruvate for use in gluconeogenesis to produce glucose.
PDH is subject to control mechanisms:
o Acetyl~CoA from the -oxidation of fatty acids rather than from glucose is used in stage 3 catabolism (acetyl~CoA allosterically inhibits PDH)
o The reaction is energy sensitive. ATP/NADH inhibit and ADP promotes allosterically.
o The enzyme is activated when there is plenty of glucose to be catabolised (insulin activates the enzyme by promoting its Dephosphorylation).
LO 3.4 describe the roles of the tricarboxylic acid (TCA cycle) in metabolism
The TCA cycle (Krebs cycle, citric acid cycle, stage 3 catabolism) is a central pathway in the catabolism of sugars, fatty acids, ketone bodies, alcohol and amino acids. It is an oxidative pathway that occurs in mitochondria.
o The pathway requires NAD+, FAD and oxaloacetate.
o Main function is to break the C-C bond in acetate (as acetyl~CoA) and oxidise the C atoms to CO2.
o The H¬+ and e- removed from the acetate are transferred to NAD+ and FAD.
o The pathway is of fundamental importance to the major energy requiring tissues of the body, and does not function in the absence of oxygen.
o There are no known defects in the pathway, as any would be lethal.
It is estimated that the TCA cycle leads to the production of 32 molecules of ATP per molecule of glucose.
The chemical strategy of the pathway is to produce intermediates (C6 tricarboxylic acids and C5 keto-acids) that readily lose CO2 producing C4 acids that are interconvertible.
As well as these catabolic functions the pathway as anabolic functions.
o C5 and C4 intermediates used for the synthesis of non-essential amino acids
o C4 intermediates used for the synthesis of haem and glucose
o C6 intermediates used for the synthesis of fatty acids
LO 3.5 Explain how the TCA cycle is regulated
The oxidation of Acetyl~CoA linked to the reduction of NAD+ and FAD by the TCA cycle is essential for the generation of ATP in all mitochondria-containing tissues.
Therefore two major signals feed information to the TCA cycle on the rate of ATP use:
o ATP/ADP ratio
o NADH/NAD+ ratio
One of the irreversible steps in the TCA (catalysed by isocitrate dehydrogenase) is allosterically inhibited by the high-energy signal NADH and activated by the low-energy signal ADP.
LO 3.6 Describe the key features of oxidative phosphorylation
Oxidative Phosphorylation is Stage 4 of catabolism.
The complete oxidation of glucose:
C6H12O6 + 6O2 6CO2 + 6H2O G = -2,870 kJ/mole
By the end of stage 3 (TCA cycle):
o All C-C bonds have been broken, and C-atoms oxidised to CO2
o All C-H bonds have been broken, and H-atoms (H¬+ and e-) transferred to NAD+ and FAD.
All of the energy from the breaking of these bonds has gone to:
o ATP/GTP formation (2 in glycolysis, 2 in the TCA cycle)
o Chemical bond energy of the e- in NADH/FAD2H
NADH and FAD2H contain high energy electrons that can be transferred to oxygen through a series of carrier molecules, releasing large amounts of free energy.
NADH + H+ + O NAD+ + H2O G = -220 kJ/mole
FAD2H + O FAD + H2O G = -152 kJ/mole
This energy can be used to drive ATP synthesis in the final stage of catabolism (oxidative phosphorylation), occurring in the inner mitochondrial membrane.
o Electron Transport, electrons in NADH and FAD2H are transferrerd through a series of carrier molecules to oxygen, releasing free energy.
o ATP synthesis, the free energy released in electron transport drives ATP synthesis from ADP + Pi
LO 3.7 Explain the processes of electron transport and ATP synthesis and how they are coupled
Electron transport
o Carrier molecules transferring electrons to molecular oxygen are organized into a series of four highly specialized protein complexes spanning the inner mitochondrial membrane.
o Electrons are transferred from NADH (and FAD2H) sequentially through the series of complexes to molecular oxygen with the release of free energy.
o Three of the complexes, in addition to transferring electrons, also act as proton translocation complexes (proton pump).
Proton Motive Force (PMF)
o Free energy from electron transport is used to move protons from the inside to the outside of the inner mitochondrial membrane via p.t.complexes.
o The membrane itself is impermeable to protons and as electron transport continues the concentration of protons outside the inner membrane increases.
o The proton translocating complexes therefore transform the chemical bond energy of the electrons into an electro-chemical gradient.
o This is known as the Proton Motive Force.
o NADH has more energy than FAD2H and so uses all three p.t.complexes while FAD2H only uses two.
o This process requires oxygen, as it is the last electron acceptor.
ATP Synthesis
o ATP Hydrolysis results in the release of energy (G = -31kJ/mol). Therefore for the synthesis of ATP from ADP and Pi, + 31 kJ/mol of energy is required to drive the reaction.
o This energy is derived from the pmf that has been produced across the inner mitochondrial membrane by electron transport.
o Protons can normally only re-enter the mitochondrial matrix via the ATP synthase complex, driving the synthesis of ATP from ADP and Pi.
The greater the PMF the more ATP synthesised
The oxidation of 2 moles of NADH gives 5 moles of ATP
The oxidation of 2 moles of FAD2h gives 3 moles of ATP
Coupling of Electron Transport and ATP synthesis
ET and ATP Synthesis are tightly coupled. One does not occur without the other.
The mitochondrial concentration of ATP plays an important role in regulating both processes.
When ATP concentration is high:
- The ADP concentration is low and the ATP synthase stops (lack of substrate)
- This prevents H+ transport back into the mitochondria
- The H+ concentration outside increases to a level that prevents more protons being pumped to the outside
- In the absence of proton pumping, electron transport stops
LO 3.8 Describe how, when and why uncoupling of these processes occurs in some tissues
Some substances (eg dinitrophenol, dinitrocresol) increase the permeability of the inner mitochondrial membrane to protons. Therefore protons being pumped out by electron transport can re-enter without passing through the ATP synthase complex.
The two processes become uncoupled so the p.m.f. is dissipated as heat.
Proton leak is physiologically important and accounts for 20-25% of the BMR.
Uncoupling Proteins (UCPs)
The function of UCPs is to uncouple ET from ATP production to produce heat. The proteins are located in the inner mitochondrial membrane and allow a leak of protons across the membrane.
UCP1 - (previously known as thermogenin) is expressed in brown adipose tissue and involved in non-shivering thermogenesis enabling mammals to survive the cold.
UCP2 – Quite widely distributed in the body. Research suggest it is linked to diabetes, obesity, metabolic syndrome and heart failure.
UCP3 – Found in skeletal muscle, brown adipose tissue and the heart. It appears to be involved in modifying fatty acid metabolism and in protecting against ROS damage.
Noradrenaline – Is released from the sympathetic nervous system and stimulates lipolysis releasing fatty acids to provide fuel for oxidation in brown adipose tissue. NADH and FAD2H are formed as a result of -oxidation of the fatty acids. NADH and FAD2H drive ET and increase p.m.f. However, noradrenaline also activates UCP1, allowing protons to cross the inner mitochondrial membrane without passing through the ATP synthase complex. The higher p.m.f. is dissipated as heat.
LO 3.9 Compare the processes of oxidative phosphorylation and substrate level phosphorylation
Oxidative Phosphorylation
Requires membrane associated complexes
(inner mitochondrial membrane)
Energy coupling occurs indirectly through generation and subsequent utilisation of a proton gradient (p.m.f.)
Cannot occur in the absence of oxygen
Major process for ATP synthesis in cells that require large amounts of energy
Substrate Level Phosphorylation
Requires soluble enzymes.
(Cytoplasmic and mitochondrial matrix)
Energy coupling occurs directly through formation of a high energy of hydrolysis bond (phosphoryl-group transfer)
Can occur to a limited extent in absence of oxygen
Minor process for ATP synthesis in cells that require large amounts of energy
LO 3.10 Describe the various classes of lipids
Lipids are a structurally diverse group of important compounds that are generally insoluble in water (hydrophobic) but are soluble in organic solvents. There is no general formula but most contain C, H and O (phospholipids also contain P and N). They are more reduced than carbohydrates (contain less O and more H per C-atom).
Classes of lipids
1. Fatty acid derivatives
o Fatty Acids – Fuel molecules
o Triacylglycerols – Fuel storage and insulation
o Phospholipids – Components of membranes and plasma lipoproteins
o Eicosanoids – Local mediators
2. Hydroxy-methyl-glutaric acid derivatives (C6 compound)
o Ketone bodies (C4) – Water soluble fuel molecules
o Cholesterol (C27) – Membranes and steroid hormone synthesis
o Cholesterol esters – Cholesterol storage
o Bile acids and salts (C24) – Lipid Digestion
3. Fat Soluble Vitamins
o A, D, E and K
LO 3.11 Describe how dietary triacylglycerols are processed to produce energy
Triacylglycerols are the major dietary lipids (butter, vegetable oils) and are hydrolysed by pancreatic lipase in the small intestine to release glycerol and fatty acids. This is a complex process requiring bile salts and a protein factor called colipase.
Glycerol metabolism
Glycerol derived from the hydrolysis of dietary triacylglycerols enters the blood stream and is transported to the liver where it is metabolized.
Fatty Acids
The most common fatty acids in the body are long-chain molecules that contain an even number of C-atoms: CH3(CH2)nCOOH (n=14 to 18).
They are hydrophobic and highly reduced molecules, properties that make them ideal for energy storage.
They may be saturated or unsaturated (unsaturated contain C=C bonds).
Saturated fatty acids are a non-essential part of the diet as they can be synthesised from carbohydrates and certain amino acids.
Over 50% of fatty acids in the body are unsaturated and contain between 1 and 4 C=C bonds. Certain polyunsaturated fatty acids are essential components of the diet as they cannot be synthesised in the body.
Arachidonic acid (C20:4) is an important polyunsaturated fatty acid as it is the starting point for the synthesis of the eicosanoids.
LO 3.12 Describe how, when and why ketone bodies are formed
There are three ketone bodies produced in the body:
o Acetoacetate – CH3COCH2COO-
o Acetone – CH3COCH3 (Spontaneous non-enzymatic decarboxylation of above)
o B-hydroxybutyrate – CH3CHOHCH2COO-
Acetoacetate and B-hydroxybutyrate are synthesised in the liver from Acetyl~CoA.
Normally the concentration of ketone bodies in the cirulation is low (10mM – pathological ketosis)
Ketone bodies are water-soluble molecules, allowing high plasma concentration and their excretion in urine (ketonuria).
Acetoacetate and B-hydroxybutyrate are relatively strong organic acids and when in high concentration in the plasma they may cause acidosis (ketoacidosis).
Acetone is volatile and may be excreted via the lungs (acetone smell on breath of untreated type 1 diabetes).
Ketone body synthesis/Regulation
Hydroxymethyl glutaryl CoA lysase/reductase enzymes are controlled by the insulin/glucagon ratio. Ketone synthesis occurs when glucose concentration is low.
Therefore Glucose Glucagon Lyase Ketones and vice versa
The synthesis of ketone bodies requires both of the following:
o Fatty acids to be available for oxidation in the liver following excessive lipolysis in adipose tissue – this supplies the substrate.
o The plasma insulin/glucagon ratio to be low, usually due to a fall in plasma insulin – this activates the lyase and inhibits the reductase.
Ketone bodies are important fuel molecules that can be used by all tissues containing mitochondria including the nervous system. The rate of utilisation is proportional to the plasma concentration. They are converted to acetyl~CoA and this is subsequently oxidised via stage 3 catabolism (TCA cycle).
LO 3.13 Describe the central role of acetyl~CoA in metabolism
Acetyl~CoA is produced by the catabolism of:
o Fatty Acids
o Sugars
o Alcohol
o Certain amino acids
And can be oxidised via stage 3 of catabolism (TCA cycle).
Acetyl~CoA is an important intermediate in lipid biosynthesis the major site of which is the liver (some in adipose tissue).
LO 4.1 Describe the major energy stores in a 70kg man
Type of Fue -> Weight (kg -> Energy Content (kJ)
Triacylglycerol -> ~ 15 -> ~ 600,000
Glycogen -> ~ 0.4 -> ~ 4,000
Muscle Protein -> ~ 6 -> ~ 100,000
LO 4.2 Describe, in outline, the reactions involved in glycogen synthesis and breakdown
Glycogen Synthesis (glycogenesis)
The pathway of glucose to glycogen involves a number of steps:
1. Glucose -> Glucose 6-Phosphte (catalysed by hexokinase and using ATP)
2. Glucose 6-Phosphate -> Glucose 1-Phosphate (catalysed by phosphoglucomutase)
3. Glucose 1-Phosphate + UTP + H2O -> UDP-Glucose + 2 Pi
(UTP is structurally similar and energetically equivalent to ATP. UDP-Glucose is a highly activated form of glucose. Interconversion of glucose to galactose.
4. Glycogen (n residues) + UDP-Glucose -> Glycogen (n+1 residues) + UDP
This irreversible reaction is catalysed by glycogen synthase adding non-branched (alpha 1,4 glycosidic bonds) subunits and branching enzyme adding branched subunits (Alpha 1,6 glycosidic bonds) about every 10 units.
Glycogen Breakdown
Glycogen is degraded in skeletal muscle in response to exercise and in the liver in response to fasting (or from stress response: “fight or flight”). The pathway is not a reversal of glycogen synthesis. The complete degradation of glycogen is shown by:
Glycogen (n residues) + nPi -> 0.9n Glucose 6-Phosphate + 0.1n Glucose
Glycogen is never degraded fully, a small amount of primer is always preserved.
The Degradative pathway consists of the following steps:
1. Glycogen (n residues) + Pi -> Glucose 1-Phosphate + Glycogen (n-1 residues)
The reaction is catalysed by glycogen phosphorylase that attacks the alpha 1,4 bonds. The bonds are subjected to phosphorolysis, not hydrolysis resulting in glucose residues released as glucose 1-phosphate rather than free glucose.
(Glycogen phosphorylase doesn’t attack the alpha 1,6 branch points as this requires de-branching enzyme. De-branching enzyme produces free glucose)
2. Glucose 1-Phosphate -> Glucose 6-Phosphate (catalysed by phosphoglucomutase)
The glucose 6-phosphate enters glycolysis and is used to provide energy for exercising muscle.
Muscle glycogen represents a store of glucose 6-phosphate only used by muscle
In the liver, glucose 6-phosphate is converted to glucose using glucose 6-phosphatase (absent in muscle):
3. Glucose 6-phosphate + H2O -> Glucose + Pi (catalysed by glucose 6-phosphatase)
The glucose is released into the blood stream and transported to other tissues.
Therefore, liver glycogen represents a glucose store that can be made available to all tissues of the body.
LO 4.3 Compare the functions of liver and muscle glycogen
Liver Glycogen – Glucose store for all tissues of the body
Muscle Glycogen – Glucose 6-phosphate store, only used by muscle cells
LO 4.4 Explain the clinical consequences of glycogen storage diseases
Inherited glycogen metabolism disorders result from an abnormality in one or other of the enzymes of glycogen metabolism.
1. Glycogen phosphorylase
2. Phosphoglucomutase
3. Glucose 6-phosphatase (liver)
Clinical severity depends on what enzyme/tissue is affected.
o Increased/Decreased amounts of glycogen
- Tissue damage if excessive storage
- Fasting hypoglycaemia (low blood glucose)
- Poor exercise tolerance
o Glycogen structure may be abnormal
o Usually liver and/or muscle are affected
LO 4.5 Explain why and how glucose is produced from non-carbohydrate sources
Gluconeogenesis allows the production of glucose when carbohydrates are absent. This is for glucose-dependent tissues (E.g. CNS). Initially glucose will come from stores of glycogen but these stores can only last for 8-10 hours of fasting. The liver is the main site of gluconeogenesis.
Possible substrates for gluconeogenesis
- Pyruvate, lactate and glycerol can be converted to glucose
- Essential and non-essential amino acids whose metabolism involves pyruvate or intermediates if the TCA cycle can be converted to glucose
- Acetyl~CoA cannot be converted to glucose as PDH is irreversible
The pathway of gluconeogenesis from pyruvate uses some of the steps of glycolysis.
Overall:
2 Pyruvate + 4 ATP + 2 GTP + 2 NADH Glucose + 2 NAD+ + 4 ADP + 2 GDP + 6 Pi + 2H+
Reversible steps of glycolysis are used in gluconeogenesis and irreversible bypassed.
Steps 1 & 3 are by-passed by thermodynamically spontaneous reactions catalysed by phosphatases (glucose 6-phosphatase and fructose 1,6-bisphophatase):
Glucose 6-phosphate + H2O Glucose + Pi G = -ve
Fructose 1,6-phosphate + H2O Fructose 6-phosphate + Pi G = -ve
Step 10 is by-passed by two reactions driven by ATP and GTP hydrolysis and catalysed by pyruvate carboxylase and phosphoenolpyruvate caroxykinase (PEPCK) respectively:
Pyruvate + CO2 + ATP + H2O Oxaloacetate + ADP + Pi + 2 H+ G = -ve
Oxaloacetate + GTP + 2 H+ Phosphoenolpyruvate + GDP + CO2 G = -ve
The last reaction provides a link between the TCA cycle and gluconeogenesis and enables the products of amino acid catabolism that are intermediates of the TCA cycle to be used to synthesise glucose.
Regulation of Gluconeogenesis
Gluconeogenesis is part of stress response, and is largely under hormonal control.
The major control sites are PEPCK and Fructose 1,6-bisphosphonate.
PEPCK Kinase activity is increased by – Glucagon, Cortisol
is decreased by – Insulin
Fructose 1,6-bisphosphonate activity is increased by – Glucagon
is decreased by – Insulin
Therefore, the insulin/anti-insulin ratio plays a major role in determining the rate of gluconeogenesis. In the absence of adequate levels of biologically effective insulin, (diabetes) increased gluconeogenesis rates contribute significantly to hyperglycaemia.
LO 4.6 Explain why triacylglycerols can be used as efficient energy storage molecules in adipose tissue
Triacylglycerols are the major dietary and storage lipid in the body. Consisting of three fatty acids (usually long: n=16) esterified to glycerol:
Hydrophobic and stored in an anhydrous form in a highly specialised storage tissue (adipose tissue).
Function largely as a store of fuel molecules (fatty acids, glycerol) for prolonged aerobic exercise, stress situations (e.g. starvation, pregnancy). Storage is controlled hormonally:
o Storage promotion by insulin
o Storage depletion activated by glucagon, adrenaline, cortisol, growth hormone and thyroxine.
LO 4.7 Describe how dietary triacylglycerols are processed for storage
The major dietary lipids are hydrolysed by pancreatic lipase in the small intestine to release glycerol and fatty acids.
Glycerol Metabolism
Glycerol derived from the hydrolysis of dietary triacylglycerols enters the blood stream and is transported in chylomicrons to adipose tissue to be stored as TAGs:
LO 4.8 Describe how fatty acid degradation differs from fatty acid synthesis
B-Oxidation of fatty acids
The oxidation of fatty acids occurs via a sequence of reactions (B-oxidation pathway) that oxidises the fatty acid and removes the C2 unit (acetate). The shortened fatty acid is cycled through this reaction repeatedly removing a C2 unit each turn until only two carbons remain.
The reaction sequence requires mitochondrial NAD+ and FAD. It cannot occur in the absence of oxygen since this is required for stage 4 (ox.p/ET) of catabolism to re-oxidise the NADH and FAD2H formed. There is no direct synthesis of ATP by the pathway. All the intermediates are linked to coenzyme A and the C-atoms of the fatty acid are converted to acetyl~CoA.
Fatty Acid Synthesis (lipogenesis)
Fatty acids are synthesised from acetyl~CoA (from carbohydrates/amino acids) at the expense of ATP and NADPH. The pathway occurs in the cytoplasm:
8 CH3CO~CoA + 7 ATP + 14 NADPH + 6 H+
goes to
CH3(CH2)14COOH + 14 NADP+ + 8 CoA + 7 ADP + 7 Pi + 6 H2O
NADPH is produced in the cytoplasm by the pentose phosphate pathway.
Acetyl~CoA comes from the mitochondria when cleaved from citrate – releasing oxaloacetate and Acetyl~CoA.
Most steps of the pathway are carried out by a multi-enzyme complex known as the fatty acid synthase complex. The fatty acids are built up sequentially from acetyl~CoA by a cycle of reactions that adds C2 per turn of the cycle to the growing fatty acid.
The reactions therefore appear to act in the reverse of those in the B-Oxidation pathway, however this is not the case.
The C2 units are added to fatty acid chains in the form of malonyl~CoA (a C3 compound) with the subsequent loss of CO2. Malonyl~CoA is produced from Acetyl~CoA by the enzyme acetyl~CoA carboxylase in a reaction that requires biotin:
CH3CO~CoA + CO2 ATP -> CH2(COOH)CO~CoA + ADP + Pi
(Acetyl~CoA carboxylase is not a component of the fatty acid synthase complex)
It plays an important role in controlling the rate of fatty acid synthesis and can be regulated by:
o Allosteric regulation (citrate activates and AMP inhibits)
o Regulation by covalent modification of protein structure
(Reversible phosphorylation/dephosphorylation)
Insulin activates by promoting dephosphorylation (removing bulky PO4)
Glucagon & Adrenaline inhibit the enzyme by promoting phosphorylationq