MCAT Biochemistry Flashcards
What is the central dogma of molecular biology?
DNA —-> RNA —-> Protein
How can DNA be copied?
Through the process of replication.
By what process is DNA converted into RNA?
Transcription
By what process is RNA converted into protein?
Translation
By what process is RNA converted into DNA?
Reverse Transcription
Reverse Transcriptase
generates complementary DNA or cDNA from an RNA template.
Why are reverse transcriptases needed?
Needed for the replication of retroviruses such as HIV.
Why are RNA viruses important?
They can directly be translated into proteins, can serve as the template for another RNA molecule.
Ex: SARS, Influenza, Measles
Non-coding RNA
directly perform functions in the cell, are not translated into proteins. Ex: tRNA and rRNA.
Epigenetics
study of heritable changes in gene activity that are not caused by changes in DNA sequence.
Ex: DNA methylation and histone modifications.
How are peptide bonds formed?
The amino group of one amino acid carries out a nucleophilic attack on the carboxyl group of another amino acid forming an amide bond and releasing a water molecule.
What is unique about the peptide bond?
It is planar and rigid, due to the partial double bond character by resonance stabilization.
What are the two ways in which peptide bonds can be broken?
acid hydrolysis and proteolysis
Breaking peptide bonds, by acid-hydrolysis + heat specific or non-specific?
non-specific cleavage.
Breaking peptide bonds, by proteolysis specific or non-specific?
specific cleavage.
Proteolysis
will cleave peptide bonds between certain specific amino acids.
Trypsin
a protease that cleaves on carboxyl side of lysine and arginine.
What is special about histidine?
Histidine’s side chain has a pKa that is close to the physiological pH. Therefore, histidine will exist in both protonated and deprotonated forms and will be useful to have in an enzyme’s active site.
pH < pKa
protonated
pH > pKa
deprotonated
What is special about proline?
proline has a secondary alpha amino group.
What is special about glycine?
glycine not chiral, glycine is considered to be very flexible.
What role to proline and glycine play in secondary structure of proteins?
proline and glycine play a role in disrupting alpha helices by introducing kinks.
What is special about cysteine?
The thiol (SH) group of cysteine can form disulfide bonds.