Lysosomes Flashcards

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1
Q

What sort of materials get sent to the lysosomes?

A

Lysosome enzyme that come from the Golgi, material from the outside of the cell, organelles that are breaking down

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2
Q

Why do lysosomes have to constantly be created?

A

The enzymes inside break down everything from proteins to lipids to carbohydrates, so lysosomes will eventually eat themselves

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3
Q

What components of a lysosome change as it matures?

A

pH and enzyme composition

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4
Q

What is an early endosome?

A

The earliest stage of lysosomal maturation. They have a pH of 6.5-6.8, so the enzymes aren’t active

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5
Q

What is a late endosome?

A

When the early endosome becomes more acidic (5.5 - 4.5) and the enzymes start to work

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6
Q

How do endosomes get the acidic pH?

A

They have a proton pump and as time goes on they mature and become more acidic

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7
Q

Do cytosolic and nuclear proteins get degraded in lysosomes?

A

No. They get ubiquinated and sent to the proteosomes for degradation

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8
Q

What is the general name for enzymes that work in the lysosomes?

A

Acid hydrolases

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9
Q

What feature do lysosomes have that slows down the process of them eating themselves?

A

A thick layer of carbohydrates, but the lysosome is done for once that gets degraded

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10
Q

What stops the lysosomal enzymes from degrading every else in the cell when the lysosome breaks open?

A

The pH. The enzymes don’t work at a neutral pH, so the enzymes stop working right away

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11
Q

How are proteins targeted to the lysosome?

A

They have a sugar chain that acts as the signal sequence, instead of an amino acid sequence. That chain has a mannose-6-phosphate on it, which is the sequence. There are M6P receptors in the trans-golgi network that bind to the M6P sequence, and a vesicle going to the lysosome is formed

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12
Q

How is the mannose-6-phosphate signal sequence created?

A

The default sugar branch added to every protein going through the ER gets a phosphate stuck on the 6th position of a mannose, which stops any more modifications that would normally be done to secretory proteins

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13
Q

What is the enzyme that adds the phosphate to the mannose? Why is it not a kinase?

A

GlcNAc phosphotransferase. Kinases add phosphates to serine, threonine, and tyrosine, and this phosphate is being added to a mannose instead

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14
Q

What is the coat protein used for vesicles going to the lysosomes?

A

Clathrin

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15
Q

How do the lysosomal proteins dissociate from the M6P receptors? What stops them from rebinding?

A

The lower pH lowers their affinity for each other and causes them to dissociate. A phosphatase is waiting in the endosome and it cleaves the phosphate off the mannose, so it can’t bind to the receptor at all

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16
Q

Which two proteins form clathrin coated vesicles?

A

Clathrin forms the outer layer, and the inner layer is made of adaptin/AP2/Adapters

17
Q

What is the structure of clathrin? What is the structure formed when they polymerize?

A

Triskelion. Each arm has a heavy chain and a light chain of clathrin. Forms a polygonal lattice when they polymerize and causes the curvature needed for the vesicle to bud off

18
Q

Which G protein is responsible for the assembly of clathrin coated vesicles?

A

ARF

19
Q

What protein is responsible for pinching off clathrin coated vesicles? What does the same thing for COPI and COPII coated vesicles?

A

Dynamin is used for clathrin vesicles. What COPI and COPII vesicles use is unknown

20
Q

What provides the energy needed for dynamin to pinch off the vesicle?

A

GTP hydrolysis