Lipid Biosynthesis, Cholesterol, and Amino Acid Catabolism Flashcards
Fatty acid oxidation occurs in the _____, but fatty acid synthesis occurs in the _____.
mitochondria; cytosol
The redox coenzyme used for fatty acid synthesis is _____.
NADPH
Fatty acid elongation reactions are repeated until the growing chain reaches __ carbons in length.
16
What catalyzes the first committed and a rate-controlling step of fatty acid synthesis?
Biotin-dependent enzyme in the ER
cAMP [inhibits/stimulates] acetyl CoA carboxylase (ACC) through phosphorylation by PKA.
Insulin [inhibits/stimulates] ACC activity through dephosphorylation.
inhibits; stimulates
Citrate [activates/inhibits] ACC, and palmitoyl-CoA (the product of fatty acid synthesis) [activates/inhibits].
activates; inhibits
What are the three regions of acetyl-CoA carboxylase? What are their functions?
- Biotin carrier protein: Swings CO2 from biotin carboxylase to transcarboxylase
- Biotin carboxylase: Attaches CO2 to a nitrogen in the biotin ring
- Transcarboxylase: Transfers CO2 from biotin to acetyl-CoA, producing malonyl-CoA
In fatty acid synthase, each monomer functions independently. True or false?
True
In fatty acid synthase, the starter unit is an acetyl group bound to the __, while a malonyl group is bound via a _____ to the ___.
KS; thioester; ACP
What are the four steps of fatty acid synthesis?
- Condensation: CO2 leaves; chain extends by two carbons
- Reduction: Uses NADPH; beta-keto group is reduced to an alcohol
- Dehydration: H2O leaves; creates double bond
4: Reduction: Uses NADPH; double bond is reduced to from saturated fatty acyl group
The fatty acyl chain grow by __ carbons donated by malonate, which a loss of CO2 at each step.
2
In ACP, the __ group is the site of entry of malonyl groups during fatty acid synthesis.
SH
What system is used to create fatty acids longer than 16 carbons? Where is it located?
Fatty acid elongation system
Smooth ER
In the fatty acid elongation system, ACP is replaced by what?
Acyl-CoA
Can all cells synthesize cholesterol?
Yes
In certain cells, the cholesterol backbone is used for what two things?
Steroid hormone and bile acid biosynthesis
Is cholesterol oxidized to derive energy?
No
Mevalonate is converted to what activated isoprene units using how many ATPs?
IPP and DMAPP using 3 ATPs
What are statin drugs?
Competitive inhibitors of HMG-CoA Reductase
Reduced biosynthesis coupled with a low-fat diet reduces whole body cholesterol levels
Competitive inhibitors of HMG CoA Reductase are mimics of what molecule?
Mevalonate
Lipids are [more/less] dense than proteins.
less
What are chylomicrons?
Lipoproteins that transport lipids from the diet
(Lowest-density lipoproteins – more lipids, less protein)
What do very-low-density lipoproteins (VLDLs) do?
Carry triacylglycerols from the liver to peripheral tissues
What do low-density lipoproteins (LDLs) do?
Transport cholesterol from liver to peripheral tissues
High LDL values can lead to what?
Atherosclerosis
High-density lipoproteins (HDLs) do what? Why are they good?
Transport cholesterol from dead/dying cells back to liver
They’re good because they remove cholesterol from tissues.
List the four lipoproteins from smallest to largest.
HDL, LDL, VLDL, chylomicrons
Which lipoprotein has the highest triacylglycerol composition? Chylomicron or VLDL?
Chylomicron
Which lipoprotein has the highest cholesterol ester and cholesterol composition? HDL or LDL?
LDL
Where is HDL made?
The liver and intestine
LDL is [endocytosed/exocytosed].
endocytosed
Nitrogen exists primarily in what two forms?
N2 in the atmosphere or nitrate (NO3-) in the soil or ocean
The reduction of NO3- to NH4+ in plants, fungi, and bacteria is called what?
Nitrate assimilation
The formation of NH4+ from N2 gas in prokaryotes is called what?
Nitrogen fixation
Nitrogen is found where in the human body?
Nucleic acids and proteins
Largest cache of nitrogen in the human body is in what?
Amino acids
Largest cache of amino acids is in the what?
Skeletal muscles
Where are amino groups metabolized?
The liver
Amino groups are shuttled to the liver in the form of _____ from most tissues and as _____ from the muscle.
glutamine; alanine
Amino groups are converted to ____ in mammals for excretion in urine.
urea
Which four amino acids are important in nitrogen metabolism?
Glutamate, glutamine, alanine, and aspartate
Ammonia is transported from other tissues in the form of _____, then converted back to _____ in the liver.
glutamine; glutamate
Excess ammonia in tissues is added to _____ to form _____. This reaction is catalyzed by what enzyme?
glutamate; glutamine
Glutamine synthetase
After transport in the bloodstream, glutamine enters the liver and NH4+ is liberated in the mitochondria by what enzyme?
Glutaminase
Alanine serves what two functions?
- Carrier of ammonia
- Carbon skeleton of pyruvate from skeletal muscle to liver
Acetyl-CoA groups pass out of the mitochondrion as what?
Citrate
Which enzyme produces acetyl-CoA for fatty acid synthesis?
Citrate lyase
Malate is oxidized by malate dehydrogenase to generate what?
NADPH
What are the four stages of cholesterol synthesis?
- Condensation of 3 acetate groups to form a 6-carbon mevalonate
- Conversion of melavonate to activated 5-carbon isoprene units (Requires 3 ATP)
- Polymerization of six 5-carbon isoprene units to form a 30-carbon linear squalene
- Cyclization of squalene to form a 4-ring steroid nucleus
How does the protein NPC1L1 help with the intestinal absorption of cholesterol?
NPC1L1 binds free cholesterol, which is then packaged into chylomicrons and delivered to the liver.
In many aminotransferase reactions, what is the amino group acceptor?
Alpha-ketoglutarate
All aminotransferases have what as a cofactor/prosthetic group?
Pyridoxal phosphate (PLP)
In the liver, _____ catalyzes ammonium production by _____ in mitochondria using either ___ or ___ as the cofactor.
glutamate dehydrogenase; oxidative deamination; NAD+; NADP+
In the urea cycle, ammonia and CO2 are made into _____, and then into _____.
arginine; urea
When proteins and amino acids enter the stomach, they induce the production of the hormone _____. This hormone causes the secretion of _____ and _____ to initiate digestion. Later on in the intestine, the hormone _____ induces the pancreas to produce bicarbonate.
gastrin; HCl; pepsinogen; secretin
What three different enzymes, expressed in the liver mitochondrial matrix, catalyze the removal of
nitrogen from an amino acid that can end up in urea?
- Glutaminase
- Glutamate dehydrogenase
- Aspartate aminotransferase
Humans derive a small fraction of oxidative energy from amino acids unless they’re what?
Starving, diabetic, or on a low carb diet
Proteases degrade ingested proteins in what two organs?
Stomach and small intestine
True or false? Individual amino acids are absorbed by the body.
True
Name the ten essential amino acids
- Histidine
- Isoleucine
- Leucine
- Lysine
- Methionine
- Phenylalanine
- Threonine
- Tryptophan
- Valine