Life on Earth Flashcards
3 tiers that we can measure biodiversity
genetic
species (aka taxonomic)
ecosystem
biological species concept
is a species when it can make a fertile offspring
erwin (1998) experiment
using pesticide on a tree in the Panamanian rainforest
found over 400 species of beetle in the canopy
22 in the lower limbs and trunk
example of hybridisation posing a challenge in describing plant species
false oxlip - hybrid between primrose and cowslip
examples of plants that use uniparental reproduction
brambles, hawthorns, dandelions
definition of Biodiversity - Gaston and Spicer (2004, pg.6)
The variety of life, in all its many manifestations. It encompasses all forms, levels and combinations of natural variation and thus serves as a broad unifying concept.
how can we use fossils to identify species?….and an example
We study changes in fossils to see new species occurring through evolution. EG - There used to be a horse the size of a Labrador - 56-34 mya
Estimated no. insect species
2-30mn
what are chordates
vertebrates and closely related invertebrates
mammals, reptiles, amphibians, birds
what are the two main drivers of species decline?
habitat degradation and exploitation
what are the twin crises?
climate change and species extinction
what was the Mediterranean climate like 20ka ago
much cooler and dryer
where is resource over exploitation by humans the most damaging to species?
marine environments
why is fossil record difficult to use to identify species
we can’t see the tissue and therefore can’t identify reproductive organs
why is the no. species unknown?
they may be unknown to science (ie only known by indigenous people such as in tropical habitats)
many not discovered, especially soils and deep ocean benthos
why was wegeners theory not accepted at first?
no evidence for the tectonic movements.
he wasn’t taken seriously by the geology community as he was an atmospheric scientist
what is the current working estimate of the no. species?
3.5-111.5 million
how does biogeography link to colonialism
Slaves were used to collect plant specimens, live and dead animals, shells and rocks such as for Sir Hans Sloane and Carl Linnaeus
In naming humans as Homo Sapiens, Linnaeus divided them into 4 categories based on physical appearance; Africa, America, Asia and Europe with a hierarchy favouring Europeans. This lead to race science which devastates groups of people.
Expeditions to understand life on Earth came along side imperial expansions - Joseph Banks (Kew Gardens) went along side James Cook
fossils are held far from where they were collected or excavated
current world distribution of flora and fauna are linked strongly to colonialism - British, Spanish French and Dutch restructured alien flora world wide.
elements of ecological diversity
biomes, bioregions, landscapes, ecosystems, habitats, niches, populations
elements of genetic diversity
populations, individuals, chromosomes, genes, nucleotides
elements of organismal diversity
domains/kingdoms
phyla
genera
species
subspecies
populations
individuals
what is genetic diversity
differneces in the genetic makeup between species
what is organismal diversity and give example
diversity within and between taxa.
eg - marine environment has more animal phyla, but fewer species, than terrestrial realms
genera
A Principle taxonomic category that ranks above species and below family; denoted by a capitalised Latin name
what are the five kingdoms in taxonomy
bacteria, protists, plants fungi and animals
what are organisms classed into
kingdom, phylum, class, order, family, genus and species
what is the 3 domain classification
bacteria and archaea (both prokaryotes) and eukarya
what are archaea
single celled microbes without a nucleus (prokaryotes). look like bacteria, but different genome and often live in extreme environments
what are bacteria
prokaryotic (no nucleus). unicellular with no organelles. include pathogens and probiotics.
what can we use the molecular clock for
shows when species diverged from each other
Noss (1990) onion diagram… 3 ways of measuring biodiversity
compositional, functional, structural
IUCN red list meaning
species is endangered
how was the iberian lynx species moved from critically endangered to endangered?
captive breeding
simple definition of biogeography
reasons why species are found where they are
2 key components of measuring diversity
no. entities
degree of difference between those entities.
how can genetic diversity be measured
directly - identifying and cataloguing variation in nucleotides, genes and chromosomes
indirectly - quantifying variation in phenotypic features shown to have a genetic basis.
definition of genotype
set of genes an organism carries
definition of phenotype
physical features of an organism. influenced by both genotype and environment
why does Practical application mean biodiv is measured mostly in terms of species richness (Gaston and Spicer, 2004)
Practical application measurable in practice - estimations are consistent of number of species of a given status in a given tason in a given area at a given time.
why does existing information mean biodiv is measured mostly in terms of species richness (Gaston and Spicer, 2004)
a substantial amount of info already exists on patterns in species richness, this has been made available in scientific literature. futher info can be extracted from museum collections and computerised data bases
why does surrogacy mean biodiv is measured mostly in terms of species richness (Gaston and Spicer, 2004)
species richness acts as a surrogate measure for many other types of variation in biodiversity.
generally if numbers are moderate; greater no. species will embody more genetic diversity, more organismal diversity and greater ecological diversity.
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how does wide application mean biodiv is measured mostly in terms of species richness (Gaston and Spicer, 2004)
the species unit is commonly seen as the unit of practical management, of legislation, of political discourse and of tradtion. variation in biodiv is often pictured as variation in species richness
Key points Why biodiv is measured mostly in terms of species richness (Gaston and Spicer, 2004)
- practical application
- existing information
- surrogacy
- wide application
2 KEY POINTS with explaination- limitations of measuring biodiversity in terms of species richness (Gaston and Spicer, 2004)
- definition of species - lack of agreement on what a species is. species can be regarded as hypotheses, opinions of concepts, as much as real robust entities. More than 7 major species concepts from either theoretical/practical perspectives.
- different types of diversity. example - 2 different species of mouse would be equally as diverse as a mouse and a squid. - but is this likely….normally 10s if not 100s thousands of species? Plus species richness correlates to other types of diversity
7 main species concepts provided in (Gaston and Spicer, 2004)
- biological
- cohesion
- ecological
- evolutionary
- morphological
- phyologenetic
- recognition
Definition of biological species concept
states that a species is a group of populations whose members have the potential to interbreed in nature and produce viable, fertile offspring; they do not breed successfully with other population
Definition of cohesion species concept
The smallest group of cohesive individuals that share intrinsic cohesive mechanisms (eg interbreeding ability, niche)
ecological Niche meaning
- The specific area where an organism inhabits
- The role or function of an organism or species in an ecosystem
- The interrelationship of a species with all the biotic and abiotic factors affecting it
morphological species concept
Classifies organisms based on observable phenotypic traits;It can be applied to asexual organisms, fossils, and in cases when we don’t know about possible interbreeding ; There is some subjectivity in deciding which traits to use
limitations of morphological species concept
- species boundaries are unclear
- sometimes different species look alike
- only uses phenotypic data
limitations of biological species concept
- excludes asexual taxa
- complicated by natural hybridisation
- polyploidy (where offspring recieve more than 1 pair of chromosomes)
(Gaston and Spicer, 2004) Provides 3 reasons why working with the fossil record is a constraing to understand history of life on Earth…
-
fossil record is far from perfect or even. The record is far better for some periods than others.
No. species leaving fossil record range from <1 to at most a few % of those that ever lived. - only a tiny fraction of the fossil record has been recovered
- the record, and the portion recovered, is biased towards the more abundant, widespread and lionger lived species. Also biased towards some types of organisms than others. ie soft bodied organisms like jellyfish are rarely fossilised while there are bilions of brachiopods (hard bodied).
examples of major groupings of soft bodied organisms that have left no fossil remains
the Platyhelminthes - flatworms, flukes and tape worms
what % of fossil species are marine animals
95%
what estimated % of primate species that have existed are known from fossils (and cite)
at most only 7% (Tavare et al, 2002)
while the fossil record continues to provide the bulk of insigns into the history of biodiversity…what else? is playing a significant role
molecular evidence
how can molecular evidence show history of biodiversity?
- we study the molecular data to see patterns of phylogenetic relatedness
- more different sequences will have diverged earlier in the evoulationary process
- assuming rates of molecular sequences diverging.. - we can create a molecular clock and estimate times of evolutionary events
examples of molecular and fossil evidence differing - and (cite)!
- molecular evidence suggests atleast 6 animal phyla originated deep in the Precambrian (400 myr+), much earlier than their first appearance in fossil record
*(Wang et al, 1999)
limitation of molecular evidence in understanding history of LoE
we assume rates of molecular divergance and the nature and dynamics of molecular clock.
4 geological eons
Hadean, Archean, Proterozoic, Phanerozoic
last 3 geoloic eras
Palaeozoic, Mesozoic, Cenozoic
periods within Cenozoic
Tertiary, Quaternary
Epochs within the Quaternary
Pleistocene, Holocene
Major events in Precambrian re life on earth
Origin of life - First multicellular organisms
Major event in Cambrian re life on earth
All of the major phyla arose that are present in fossil record including the first vertebrates
Major event in Permian re life on earth
mass extinction of marine invertebrates, origins of mammal-like reptiles and modern insects
Major event in Triassic re life on earth
Origin and diversification of ruling reptiles, origin of mammals, gymnosperms dominant
what are gymnosperms
Seed producing plants (spermatophytes) that do not flower - for example conifers
what are angiosperms
flowering plants. produce seeds so spermatophytes
Major event in Jurassic re life on earth
domiance of ruling reptiles and gymnosperms
origin of birds
Major event in Cretaceous re life on earth
origin of angiosperms
ruling reptiles and many invertebrates go extinct towards the end of period
when was the zenith of biodiversity?
late tertiary/early Quaternary
Major event in Quaternary re life on earth
origin of humankind
Outline the cambrian explosion
Happened more than 500million years ago.
When most of the major animal groupsn start to appear in the fossil record
Time of rapid expansion of different forms of life on Earth
List the taxanomic classes. Starting with domain….
- Domain
- Kingdom
- Phylum
- Class
- Order
- Family
- Genus
- Species
what does homologous mean?
homology is similarity due to shared ancestry between a pair of structures or genes in different taxa.
jellyfish is an example of which plylum?
cnidarians
what % of species through earth’s history have gone extinct
over 90% (possibly close to 98%)
Gaston and spice 2004
q
why might marine species last longer in the fossil record than terrestrial
could be due to the greater buffering of marine systems to environmental change
when were the 5 big extinctions
Late Ordovician
Late Devonian
Late Permian
Late Triassic
End Cretaceous
define benthos
flora or fauna found at the bottom, or in the bottom sediments, of a sea or lake.
what does eukaryotic mean
organism containing cells with nucleus
what are protozoa
unicellular, heterotropiohc, eukaryotic species found in most habitats
Heterotrophic meaning
an organism that cannot create its own food, instead relying on nutrition from other sources of organic carbon, mainly plant and animal matter
Lists of described species are prone to two kinds of errors….(Gaston and Spicer, 2004)
- homonymy - the same species name may have been attriubted to more than one species
- synonymy - more than one species name may have been attributed to the same species.
why are fungi different to plants?
fungi are heterotrophic. this means they rely on using the matter og other plants. plants are autotrophic so create matter through photosynthesis
what are nematodes
One of the most abundant species on earth. roundworms. often parasitic
estimated No. extanct insect species that may have been synonyms (Gaston and Spicer, 2004)
20%
annual and daily rate of additional species being formally described (Gaston and Spicer, 2004)
13,000 per annum
36 per day
general trend of biodiversity on earth through history
radiations and stabilisations, punctuated by mass extinctions of different taxanomic groups at different times
Alpha diversities meaning
the number of species found within local assemblages or communities
beta diversities meaning
turnover of species identities between communities
gamma diversity
number of species occurring across a region
equation showing the relationship between species richness and area
S=cA^z
S = number of species
A = area
c and z = constants (Arrenhius relationship)
4 primary reasons to explain the species-area relationship
- sampling. There may be no underlying relationship between species number and area - simply more species are sampled in a larger area
- habitat diversity - larger areas are more topographically and environmentally diverse, so may contain more habitats giving more opportunities for organisms to establish and persist
-
colonisation/extinction dynamics - colonisation rates decrease if there are more species in an area - due to fewer species meaning to colonise and early colonisers are best suited to colonisation.
extinction rates will rise if more species in an area due to more negative interactions of competition and predation. - speciation/extinction dynamics - balance between speciation and extinction most significant. the larger the area - larger potential geographic ranges of species - thus greater liklihood of speciating and smaller liklihood of extinction.
what is speciation
when populations evolve to become entirely unique new species
2 theoretical types of relationship between the local richness an assemblage might attain and the species richness of the region in which that assemblage resides have been contrasted……
- Type I - local richnes may be directly proportional to, but less than, regional richness, following a proportional sampling model
- Type II as regional richness increases, local richness might attain a ceiling above which it does not rise despite continued increases in regional richness
what % of known classes are marine?
yet what % of known species are marine?
(Reaka-Kudla, 1997)
90%
less than 15%
5 sets of factors that have been suggested to explain the contrast in diversities between land and sea….
1.Life began in the sea -early diversification of form that led to different taxa occured in sea, with only some of groups being able to then make it onto land
2.continental environments are more hetergeneous than marine ones - this promotes greater levels of speciation on land. continental drift resulted in distinct F&F assemblages on different land masses, with different speicies with similar roles
3.ocean bed environment is less architecturally elaborate than the terrestrial environment - would promose more speciation on land
4.patterns of herbivory differ between sea and land - herbivores in marine environments tend to be generalists while terrestrial are specialist, often feeding on just a single host plant in a certain part. more specialism leads to more speciation.
5.differences in body size distributions of marine and terrestrial species assemblages - primary production, herbivory and predation involve smaller smecies in the sea than on land. Smaller bodied species maintain the continuity of larger geographic ranges more readily through larger numbers of individuals…this might reduce liklihood of allopatric speciation
what is allopatric speciation
species populations become geographically isolated from each other to an extent that prevents or interferes with gene flow leading to the development of a new species
which biogeographic region contains the most biodiversity
Neotropics
the three tropical biogeographic regions contain how much of the world’s extant species
over 2/3
tropics from most to least biodiverse
neotropics, indotropics, afrotropics
why are the afrotropics less biodiverse than the neo and indo tropics
- tropical forests of africa are not as extensive, well developed or rich as those in the other 2
4 KEY TAKEWAYS from the composition of biodiversity across the broad biogeographic regions
- three tropical regions are the most biodiverse
- neo tropics is the most biodiverse
- the three tropics decline in biodiversity - neo, then indo then afro
- the patterns in biodiversity of different biogeographic regions may not be consistent amongst many groups of organisms - for example distribution amongst regions of butterfly species appears to be more similar to that of birds than mammals
how many biomes are there according to (Olson et al, 2001)
14
4 primary biomes of the oceans…and how are they divided
polar, westerlies, trades, coastal boundaries
on the basis of the algal ecology of the pelagic open ocean
what is the pelagic zone?
the area of open ocean.
what is a biodiversity hotspot?
an area that contains exceptional concentrations of endemic species and is undergoing exceptional loss of habitat
what does it mean for a taxon to be endemic to an area?
it occurs there and nowhere else