Lectures 1-4 - Radioligand binding + quantitative Flashcards
Give three examples of drugs that show how molecular pharmacology is important in clinically relevent drugs
Atorvastatin
Ramiprill
Sertraline (an SSRI)
all widely used, all require knowledge of the protein-ligand interactions to function
Explain examples of pharmacological drugs created through targeting endogenous ligands
Humria - an Ab for TNF-a (an inflammatory cytokine)- a biologic that binds to TNF-a and inhibits inflammation
Keytruda Ab against PD-1 (PD-1 involved in signaling tumours)
Eylea another Ab that targets VEGF (a growth factor)
Reasons why molecular pharmacology studies are increasing
Identify endogenous and exogenous ligands to study function and for pharmacological purposes
Isolate, sequence, clone and express receptors and enzymes (compare WT and mutatnt)
Explain how Isolating, sequencing, cloning and expressing receptors and enzymes (compare WT and mutatnt) can be done in molecular pharmacology
Introduce mutations to predict what would change interaction between ligand and receptor, done through:
- Functional assays (in vitro screening) e.g. introduce receptor into transgenic system, take a tissue slice ad look at response e.g. look for receptor activation
- Model systems (e.g., cell lines for in vitro screening) - transfect cell line with receptor and measure the interaction of different drugs and molecules with receptor
- Structures: ligand-binding and function (rational drug design in silico modelling – make predictions of interactions if you change binding pocket)
- Knowledge of in vivo system (including ‘orphan’ receptors ( receptor where we don’t know what the ligand is especially G protein coupled receptors common in vivo can be used to find out about orphan receptors by e.g. by knocking out receptor))
Explain the molecular methods for receptor characterisation
- tissue with rich source of receptor protein and a selective high affinity ligand (fishing rod) (used in 80s for GABA-A, tissue used was bovine cerebral cortex, ligand used was 3H-flunitrazepam)
- Ligand has now labeled receptor in tissue (Autoradiography uses brain slice instead of homogenate and sees disruption of receptors by imaging)
- Characterise binding proerties of the receptor (its pharmacilogical profile, drug interactions)
- To isolate receptor - treat with detergent to libetare the receptpr protein from membrane and then isolate and purify by e.g. affinity chromatography
- Purified receptor, next:
- Further analysis: biochemical/biophysical/structural
- could raise antibodies for it (immunocytochemistry) to find out where localised
- Reconstitution (put into artificial membrane) and therefore discovery of function
- Partial sequence of the receptor protein, first 30/40 as from N terminus, can then predict the gene sequence that encodes protein sequence and then screen cDNA libraries to identify whole receptor, primary structure if subunit can be predicted
- Once cDNA identified: expression studies, transfection for drug screening; allowing a receptor profile to be made
BUT this is longer way, now shortcuts using bioinformatics and genetics
Explain the uses of bioinformatics as a shortcut once a protein/gene of interest has been identified
- Clone cDNA or synthesis gene de novo, allowing for expression studies
This leads to 2 things:
- solubilisation/purification - then biochemical/biophysical/structural analysis
- stable transfection and characterisation/screening
- Study of endogenous receptor (CRISPR, siRNA etc.)
- In silico modelling/screening
Explain what types of binding sites drugs bind to in tissue
Some are high affinity specific receptor sites for the drug
Some are low affinity nonspecific binding sites for the drug e.g., a lipophilic drug may simply partition into lipid membranes
Disadvantage as drugs will partition into the membrane, that’s not receptor binding
Explain what radioligand binding is and what it helps to do
Take tissue e.g. brain and something that will bind to receptor of interest that is radiolabeled
Radioligand binding techniques allow us to resolve the specific receptor binding, and to characterize this
Receptors are typically:
Glycoprotein
Multi-subunit
Expressed at low density – effective at transducing responses so don’t need high density
Reversible binding of drugs
High affinity
What is the rationale used when resolving specific receptor binding
Receptor binding is finite and saturable
Non-specific binding is non-saturable
By what logic/process do we determine specific receptor binding
Ligand will bind to specific receptors, non-specific receptors and it will partition through membrane
We resolve this by knowing that receptor binding is finite and saturable
Add an excess of unlabeled old ligands – displace drug that’s bound to receptor, now the specific will be labeled with unlabeled ligands
BUT wont displace binding to non-specific binding sites, but may partition into membrane
Total – non-specific = specific binding
Describe the process of designing a radioligand binding assay
- Decide on the source of the receptor
- Identify appropriate radioactive ligand(s)
- Identify a means to separate bound ligand from unbound ligand
- Identify a means for distinguishing specific from non-specific binding
-> Estimate the amount of ligand bound at different concentrations of ligand
Explain the different sources of receptor used in radioligand binding
Solubilised receptor – take tissue and treat with receptor to solubolise receptor
Homogenised membranes (e.g. synaptosomal preperation) - take brain tissue and homogenise
Freshly isolated or cultured cells
Cells transfected with cloned receptor (often used in pharmaceutical field)
Tissue homogenates or fresh slices of tissue (5-30 µm thick)
Animal models (sometimes human e.g. post mortem brain to measure receptor density in psychiatric conditions)
Explain how an appropriate radioactive ligand is identified for radioligand binding
If choosing a ligand (imaging, quantification) usually we want:
- High affinity for receptor (KD < 1 nM)
- Slow dissociation kinetics – goes hand in hand with high affinity
- Antagonists > Agonists – reason: agomnist bind – induces confomrational change that brings about signalling transduction cascade, affinity may change. Antagonist meand you can study structure characteristics, also antagonists have a higher affinity than agonists
- High selectivity with minimal non-specific binding (never avoid non-specific completely but want to reduce)
Be compatible with labelling and stable under experimental conditions (label should not influence binding, cause radiolysis, etc.)
Explain the advantages of using a radioactive label in receptor binding experiments
V high sensitivity
Easy incorporation
Usually no biological interference
Simple detection
Low expense
Explain the disadvantages of using a radioactive label in receptor binding experiments
Detection not usually multiplex
Not often real time measurements
Needs care in terms of safety (radiation)
Explain when fluorecent labels are used
when you want to multiplex a receptor, can look at binding simultaneous of different ligands by labelling with different tags
Measurements can also be done in real time
