Lecture - Ch. 5 - Genetics Flashcards
there are 3 categories of human genetic disorders, what are they?
1) mutation in a single gene with large effects (aka mendelian disorders)
2) chromosomal DOs: structural or numerical alterations in autosomes and sex chromosomes
3) complex multigenic DOs (aka polymorphisms)
describe mendelian/ single gene mutations and give an example
- rare, high penetrance
- sickle cell anemia: strong selective forces maintain it in the population
describe chromosomals DOs
uncommon, high penetrance
what are examples of complex multigenic/ polymorphic DOs
atherosclerosis, diabetes, hypertension, autoimmune dzs, height and weight
what are mutations?
permanent changes in the DNA
what type of mutations give rise to inherited dzs?
germ cell mutations
what type of mutations give rise to cancer and congenital malformations?
somatic cell mutations
what is a missense mutation? give an example
alter meaning of sequence of protein encoded
eg: sickle cell: glutamic acid to valine in beta-globin chain of Hb
what is a nonsense mutation?
give example
stop codon
- if it occurs in beta-globin chain = beta-not-thalassemia
what are transcription factors to be aware of when it comes to mutations in noncoding regions
MYC, JUN, p53
what happens if you get deletions or insertions of 3 base pairs?
reading frame is intact, you just get an abnormal protein
what is a trinucleotide-repeat?
amplilification of a sequence of 3 nucleotides;
almost all contain G and C
what is anticipation and what are some examples?
as genetic disorders are passed down to the next gen, the symptoms appear earlier and worsen in severity
eg: Huntingtons Disease, and myotonic dystrophy
what type of alterations occur in Cystic fibrosis? ABO blood type? and Tay sachs?
CF: 3 base deletion
ABO: single base deletion (frameshift)
Tay Sachs: 4 base insertion (frameshift)
what are Autosomal Dominant disorders to be aware of here?
nervous stystem: HD, neurofibromatosis, myotonic dystrophy
MSK: Marfan, EDS, and Osteogenesis imperfecta
Metabolic: Familial hypercholesteremia
how are AD DOs manifested?
in heterozygous state
where do new AD mutations come from?
seem to occur in germ cells of relatively older fathers
what is familial hypercholesterolemia an example of?
loss-of-function mutation
what is HD an example of?
gain of fx mutation
what are the 2 main patters of diseases that are AD? what patterns would tell you its an AD disorder?
1) affects regulation of complex metabolic pathways, subject to feedback inhibition
2) key structural proteins: collagen cytoskeleton etc
what is an example of an AD disease with a pattern of affected regulation of metabolic pathways?
Fam. Hypercholest.
- LDL receptor concentration decreases by 50% -> secondarily incr. cholesterol -> atherosclerosis in affected heterozygots
what is an example of a key structural protein affected by AD?
osteogenesis imperfecta
in regards to onset, what gives it away that its an AD?
age of onset is delayed In many conditions; sx appear in adulthood
whats is the chance of an affected parents with an AD would pass it on?
50/50
Almost all inborn errors of metabolism are what?
AR
what are some examples of AR DOs?
CF; PKU
What if two parents who are carriers of AR disease have kids? whats their chance of passing it on?
1/4
50/50: carrier
1/4 unaffected
what are the 3 features of AR DOs?
1) parent is usually not affected
2) singlings have 1/4 chance of having the trait
3) if mutation is low frequency in general populations, consanguineous marriage increases the chances above 1/4
how do you differentiate AR from AD?
- expression of defect is more uniform
- complete penetrance
- onset is early In life
- new mutations are rarely detected clinically (takes several gens)
- many mutations Involve ENZYMES (Inborn metabolic errors) (enzyme may be normal but low in abundance, or defective)
what two bugs give you CF?
staphylococcus and psudomonas
what is the primary defect in CF?
abnormal function of an epithelial chloride channel protein
encoded by: CFTR gene
chromosome: 7q31.2
what symptoms do you expect to see? clinically, what should you keep an eye out for?
chronic lung disease (in kids!), male infertility (top two)
- pancreatic insufficiency, steatorrhea, intestinal obstruction
- cirrhosis, malnutrition
whats the incidence of CF?
1/2500 libe births,
most common lethal genetic disease In Caucasians (AR)
What are CF heterozygote carriers prone to?
resp and pancreatic disease
if you kiss a baby with CF, what do they taste like?
salt
what are key clinical findings of CF?
maconium Ileus
male urogentical abnormalities; pseudomonas aeruginosa infections
if babies have a diaper with a smell described as musty or mousy odor, what do you suspect?
PKU (phenylketonuria)
whats the incidence for PKU?
1/10,000 live births; caucasians
what is PKU and what are the clinical findings?
AR, deficiency of phenylalanine hydroxylase (PAH) leading to hyperphenylalaninemia
- phenylalanine cant be converted to tyrosine
- tyrosine is a precursor for melanin
normal at birth
at 6 months, severe mental retardation
hypopigmentation of hair and skin
eczema
what is the tx for PKU?
Dietary restriction
name some X linked DOs
G6PD def.
Fragile X syndrome
what are some things about X linked DOs to be aware of?
- almost all men are recessive (located in male-specific region of Y)
- males, usually infertile
- all daugheters of affected male are carriers
- hetero female dont express full phenotypic change cuz they got a normal paired allele
when taking a family history of X linked DO case, what will stand out?
all males affected, and skips a generation
what can you suspect if you give your pt a drug, and they come back with some sort of hemolytic reaction?
suspect G6PD deficiency
drug Induced hemolytic rxs
Describe the pedigree of X linked recessive if an affected father links w a normal mom; or an affected mom linking with a normal dad
- affected dad, normal mom: sons are unaffected, daughters are carriers
- reverse: both son and daughter have 50/50 of being unaffected; affected son = 25%; daughter carrier = 25%
describe mitochondrial inheritance:
what are mendelian disorders?
- alterations to a single gene: leads to abnormal product, or decrease of a normal product
what are the 4 main catergories of mendelian DOs?
what are the consequences of a mutation in regards to an enzmye for Mendelian DOs?
decrease activity (abn fx) or decr. amount of NL enzyme
what are the 3 major consequences of having enzyme defects?
1) accumulation of substrate
2) decrease amount of end product
3) failure to inactivate a tissue damaging substrate
what is an example of #1)
galactosemia
- galactose-1-phosphate uridyltransferase defeciency
what is an example of decreased amount of end product?
- albinism: lack of tyrosinase leads to less melanin
lesch-nyhan: Incr. Intermediate product and their breakdown product Is toxic
what is an example of failure to inactivate a tissue-damaging substrate?
alpha1- antitrypsin defect:
- unable to inactivate neutrophi elastase In lung -> EMPHYSEMA
what is the most common clinically significant mutation in regards to lung disease?
PiZ; homozygots for the PiZZ protein have alpha1-AT levels that are only 10% of normal
what are two examples of defects in receptors and transport systems?
1) familial hypercholsterolemia: decr. synthesis or decr in fx of LDL receptor = defective transport of LDL into cells = secondary incr in cholesterol synthesis
2) CF: chloride ion transport
what are some examples in alterations in structure, fxs or quantity of non-enzyme proteins?
sickle cell disease: globin structure defect
- thalassemias: globin GENE affects amount of globin chains made
what medication can surface as adverse reactions to drugs in regards to mendelian DOs?
primaquine (anti-malerial) -> severe hemolytic anemia = G6PD def.
whats the genetic scoop on Marfan?
AD
- FBN1*, chr. 15Q21.1
- FABN2,* CHR. 5q23.31 (less common)
- defect in (extracell. glycoprotein) fibrillin-1
whats the marfan syndrome incidence?
1 in 5K
70-85% familial
what are the 2 fundamental mechanisms by which loss of fibillin leads to clinical findings?
1) loss of structural support (where microfibril is rich)
2) excessive activation of TGF-beta signaling
what are physical/ clinical findings of Marfan Syndrome?
- tall, exceptionally long extremeties
- “double jointed,” thumb can be hyperextended to wrist
ectopia lentis (dislocation of lens)
aortic dissection, mitral valve prolapse
cystic medial necrosis
whats the scoop on Ehlers-Danlos syndromes?
EDS
- defect in synthesis/structure of fibrillar collagen
- skin is hyperextensible, joints are hypermobile
- extra stretchy skin, extremely fragile and vulnerable to trauma
*gaping defects, caused by minor injury. surgery is difficult cuz they lack normal tensile strength
because EDS is a basic defect in connective tissue, whats serious internal complications can you expect?
- rupture of colon and large arteries (vascular EDS)
- rupture of cornea and retinal detachment (kyphoscholiosis EDS)
- and diaphragmatic hernia (Classic EDS)
what are the clinical findings of Classic EDS and its gene defects?
COL5A1, COL5A2
Skin and joint hypermobility, atrophic scars, easy bruises
what are the clinical findings and gene defects for vascular EDS?
COL3A1
- thin skin
- arterial or uterine rupture
- bruising
- small joint hyperextensibility
what are the clinical findings and gene defects for
kyphoscholiosis EDS?
lysyl hydroxylase
hypotonia, joint laxity, congenital scoliosis, ocular fragility
what should lead you to the suspicion of familial hypercholesterolemia?
MI before 20 yo
facts on familial hypercholesterolemia?
- receptor dz
- mutation in receptor for LDL
- one of the most frequent mendelian DOs
1/500 from birth have 2-3 fold Increase In cholesterol and dfvelope tendinous xanthomas
- Incr. cholesterol leads to premature atheroschlerosis leading to increased risk of MIs
what if someone is homozygous for FH?
5-6 times the plasma cholesterol
- skin xanthomas (as well as coronary and cerebral and vascular atherosclerosis at a young age; MI BEFORE 20 yo
what does the LDL receptor recognize? where does the LDL come from? explain that train
liver cell secretes VLDL (with ApoC, ApoB-100, ApoE) –> lypolysis of VLDL –> IDL with ApoE and ApoB-100 —> conversion of IDL to LDL (with ApoB-100),
LDL RECEPTOR ON LIVER RECOGNIZES ApoB-100
what happens in lysosomal storage Dzs?
catabolism of subsrates of the missing enzyme remains incomplete, leading to the accumulation within the lisosomes = primary accumulation
- lysosomes are also used for autophagy, so when THAT is the route that is taken, the impaired autophagy gives rise to secondary accumulation of autophagic substrates