Lecture 6 Flashcards

1
Q

Gnotobiotic

A

Study of animals living in a micro biologically defined environment, either germ free or colonized with known bacteria

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2
Q

Microbiota

A

The sum of all microorganisms (including bacteria,archaea, eukaryotes and viruses) that reside in and/or on a host or specified part of host

Ex: GI tract

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3
Q

What microbiota is the densest and most diverse in the gut, and in whole human body?

A

Colonic microbiota

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4
Q

The human body consist of?

A

Archaea, bacteria, virus, and eukaryotes.

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5
Q

Differences in fecal microbial community diversity composition and function have also been correlated with?

A
Crohn’s disease 
Ulcerative colitis
Irritable bowel syndrome (IBS)
C. Difficile-associated disease
Acute diarrhea
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6
Q

Describe clostridium difficile

A

Gram positive
Anaerobic
Rod-shaped
Motile bacterium

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7
Q

C. Difficile spreads in what types of way and is notable for producing?

A

C. Difficile is a spore former

Notable for its ability to produce exotoxins

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8
Q

CDIs cause what

A

C. difficile infection case a spectrum of disease which range from mild diarrhea to pseudomembranous colitis

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9
Q

What type of pathogen is C. Difficile

A

An opportunistic pathogen

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10
Q

Where can C. Difficile colonize

A

Large intestine of human, domestic, and wild animals

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11
Q

What protects the large intestine from invasive pathogens and how does it do it?

A

It is protected by indigenous flora (fecal microbiome)

Microbes provide colonization resistance against pathogenic species through competition of nutrients and attachment sites of gut wall

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12
Q

What provides a niche for colonization. By intestinal pathogens?

A

Antibiotics provide a niche for intestinal pathogens because it disrupts the barrier of micro flora and diminish colonization resistance.

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13
Q

Reduction of these two phyla by antibiotics are important to the pathophysiology of C. Difficile

A

Bacteroides and Firmicutes

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14
Q

C. Difficile was identified as what in patient stool? What was the name of the disorder? What was this disorder associated with?

A

It was identified as cytoxin. With patients that where identified with the disorder pseudomembranous colitis. Which is frequently associated with anti-microbial use.

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15
Q

Clostridium difficile is acquired through?

A

The Ingestion of spores

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16
Q

Once C.difficile is acquired where does it go?

A

Once acquired spores resist acidity of stomach and germinate into the vegetative form in small intestine

17
Q

Disruption of normal gut flora, typically by antimicrobial allows?

A

It allows C. Difficile to proliferate causing a broad spectrum of clinical manifestations.

Diarrhea, fulminant colitis, death

18
Q

What is used to subset the colonization of C. Difficile

A

Antibiotics

19
Q

People can be colonized with a non-toxigenic strain of C. Difficile. True or False?

A

True

There are non-toxigenic strains that do not produce toxins.

20
Q

Progression to symptomatic CDI is due to?

A

Not producing a sufficient antibody response

21
Q

For the toxin to remain asymptomatic what must the body do?

A

Mount a sufficient humoral response (produce antibodies)

22
Q

Pathogenicity is dependent on these two diarrhea producing toxins?

A
Toxin A (TcdA)
Toxin B (TcdB)
23
Q

All toxigenic strains contain?

A

Toxin B (TcdB)

24
Q

Several interventions targeting the intestinal microbiota have been used to maintain and improve host health. These include:

A
Probiotics
Prebiotics
Fecal transplant
Immune modulators 
Phage therapy
Antibiotics
25
Probiotics
Live organisms that confer a health benefit to the host when administered in adequate amounts
26
Prebiotics
Nondigestable food components that are selectively fermented by good gut microbial community
27
Fecal transplantation
Fecal transplant from healthy donor can restore a dysbiotic community through the administration of complete, complex microbiota in the form of feces
28
Phage therapy
A strategy to create a beneficial shift in microbiome is to develop specific bacteriophages to target particular microbes. Lyse susceptible bacterial cells
29
Antibiotics
Even though antibiotics can disrupt the microbiota but specific antibiotics can also be used to target dysbiosi, resulting in a beneficial clinical outcome.
30
Modification of the citric acid cycle for fermenting bacteria is called
Reductive (incomplete) cycle
31
Fermenting bacteria are not carrying out aerobic respiration so it not best to create a lot of?
Produce NADH and FADH2
32
What reaction products are necessary precursors for biosynthesis of amino acids?
Oxaloacetate Succinyl-COA Alpha-ketoglutarate
33
What is the solution to reduce use of NADH, FADH2 & not using an oxidative pathway?
Convert to incomplete reductive cycle
34
Fermenting bacteria have no activity for this enzyme?
Alpha- ketoglutarate dehydrogenase
35
In the reductive cycle at what part of the pathway is blocked?
Pathway is blocked between alpha-ketogluterate to succinyl-COAdue do to the little use of alpha-ketoglutarate dehydrogenase
36
How Succinyl-COA made?
By reversing the reaction between oxaloacetate to succinyl-COA
37
What enzyme is used to get to succinate from fumerate? | At this step what also happens?
Fumerate reductase Use of FADH2