lecture 32 Flashcards

1
Q

Objectives?

A
  • relate the role of important factors in normal vs cancer settings
  • appreciate the various signals contributing to carciogenesis
  • understand the role of oncogenes and tumour suppressor genes (TSGs) at the cellular lvel
  • understand the basic genetics/heritability of major oncogenes or TSGs
  • relate the various signalling pathways and genes in the context of complex networks
  • know some of the major events that can trigger carcinogenesis
  • learn some basic terminology specific to cancer causing genes
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2
Q

How have 5-year relative survival, incidence and mortality changed?

A
  • 5 year: increasing
  • incidence: increasing
  • mortality: decreasing
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3
Q

What pathways are almost always altered in cancer?

A
  • signalling pathways controlling cell survival, growth and differentiation and even metastatic potential are almost invariably altered in cancer
  • it is components of these tumour ‘specific’ (a better term is ‘enriched’) signalling pathways which differ from ‘normal’ which need to be therapeutically targeted
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4
Q

What do we mean by signalling?

A
  • transmission of information from one cell to another
    or
  • transmission of information from the ‘environment’ to a cell
  • biological communication at the level of subcellular/molecular
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5
Q

What was the view of the hallmarks of cancer in 2000?

A
  • self-sufficiency in growth signals
  • insensitivity to antigrowth signals
  • tissue invasion and metastasis
  • limitless potential for replication
  • sustained angiogenesis
  • evading apoptosis
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6
Q

What further mechanisms have been added?

A

emerging hallmarks

  • deregulating cellular energetics
  • avoiding immune destruction

enabling characteristics

  • tumour-promoting inflammation
  • genome instability and mutation
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7
Q

What are the molecular pathways in cancer?

A
  • pathway circuitry dictates biological outcome and therapeutic response –especially important to understand this is cancer
  • signalling pathways are very complex
  • but can be divided into particular ‘circuits’
    → cytostasis and differentiation circuits
    → motility circuits
    → proliferation circuits
    → viability circuits
  • having drugs that target different circuits allows for more effective therapy
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8
Q

What are the major molecular events in cancer evolution?

A
environmental agents that damage DNA 
- chemicals 
- radiation 
- virsuses 
↓
 normal cell ↔ DNA damage 
↓ failed repair (← inherited mutations in genes affecting: DNA repair, cell growth, apoptosis [only about 15%])
mutations in somatic cells 
↙↓↘
1. activation of growth promoting oncogenes 
2. impaired apoptosis 
3. inactivation of tumour suppressor genes 
↘↓↙
altered gene products (proteins); abnormal structural and regulatory proteins 
↓
malignant tumour
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9
Q

What are general cellular features typically seen in cancer?

A
  • evolve slowly
  • normal tissue has a very ordered structure of the different types of cells over different layers
  • organisation in terms of each cell
  • lose the organisation of the cells → dysplasia
  • dysplasia also appears in benign tumours
  • disorgisation/disordered signalling within cells becomes so problematic that the cells can break away, survive away from that tissue, metastasise to a different site
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10
Q

What genes are typically involved in cancer?

A
  • four classes of normal regulatory genes are the prinicipal targets of genetic damage relevant in carcinogenesis:
  • genes involved in DNA repair
  • growth-promoting proto-oncogenes
  • growth-inhibiting tumour suppressor genes
  • genes that regulate programmed cell death (i.e. apoptosis)

→ remember that in almost all cases of carcinogenesis, all classes of genes are involved and the pathways of which they are part cooperate/interact

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11
Q

What are types of mutations in cancer?

A
  • errors in DNA replication not repaired – DNA genes e.g. BRCA1 and BRCA2, leads to accumulation of erros – some genomic regions are more prone to this: mutations hotspots in oncogenes, tumour suppressor genes (TSGs), regulatory regions (of oncogenes, TSGs), controlling levels of expression
  • point mutations – activating in oncogenes; inactivating in TSGs
  • amplification of oncogenes (multiple copies)
  • chromosomal rearrangements
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12
Q

What is the role of DNA repair genes in cancer?

A
  • aberrant function of this gene class may be an early evenet or the event that allows the rapid accumulation of secondary etc mutations
  • affecting genes encoding oncogenes and TSGs

e.g.
BRCA1 and BRCA2 and homologous recombination proteins involved in repairing double-strand breaks
mutations in these genes → breast, ovarian and pancreatic cnacer
treated with PARP inhibitors, platinum salts

MSH2 and MLH1 are mismatch repair proteins that repair things such as base mismatches, insertions and deletions
→ colorectal

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13
Q

What are types of DNA damage?

A
  • single strand break
  • double strand break
  • bulky abducts
  • base mismatches, insertions and deletions
  • base alkylation
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14
Q

What is a mutation?

A
  • a mutation is any change in a DNA sequence away from normal
  • this implies there is a normal allele that is prevelent in the population and that the mutation changes this to a rare abormal variant
  • wild-type proto-oncogene → mutated oncogene (e.g. via point mutation) → constitutively active protein
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15
Q

What are oncogene amplifications?

A
  • e.g. N-MYC
  • multiple copies
  • break off of N-MYC genes forming mini-chromosomes called doube minutes
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16
Q

What are gene translocations and fusions?

A
  • e.e. BCR-ABL
  • geneation of oncogenic chimaeric molecules
  • chronic myelogenous leukaemia
  • ABL (chr 9 → chr 22)
    → tyrosine kinase
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17
Q

What are classic immunohistochemical markers for cancer?

A
  • proliferation markers
  • PCNA (proliferating cell nuclear antigen)
  • Ki-67 (aka MIB-1) → the name reflects the city of origin (Kiel, Germany) and the number of the clone recognising a specific antigen in Hodgkin lymphoma
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18
Q

What is the rate of neoplastic growth?

A
  • how long does it take for one transformed cell to produce a clinically detectable tumour containing 10^9 cells (1g)?
  • if everyone of the daughter cells remained in cell cycle and no cells were shed or lost, to reach 1g tumour need 90 days (30 population doublings, with a cell cycle type of ~3 days)
  • 10 more doublings would yield 10^12 (1kg)

in reality takes much longer: not all tumour cells divide; some die/differentiatiate

  • slow initation phase, cells still sensitive to microenvironment, don’t yet have a blood supply
  • vascularised tumour: increased rate of growth, angiogenesis important step
  • vascularised tumour with central necrosis : tumour is too big : plateau of growth
19
Q

What is steps in normal proliferation?

A
  • growth factor binds to its specific receptor
  • transient, limited activation of the growth factor receptor with signal transduction
  • transmission of signal across the cytosol to nucleus via second messengers or signal transduction cascade
  • initiation of DNA transcription
  • entry and progression into the cell cycle
GF ligand 
↓ 
GF receptor 
↓
intracellular kinase 
↓ 
transcription  → translation ↓
function – cell proliferation
20
Q

What are steps in tumour cell proliferation?

A
  • many steps in the pathway can be mutated or changed
  • e.g. mutant receptor that no longer needs a ligand/growth factor to signal
  • mutant intracellular kinase: don’t need receptor ?
  • mutant TF
  • three major point
21
Q

What are proto-oncogenes?

A
  • normal cellular genes whose products almost always promote ___ and/or supress ___ (e.g. differentiation)
  • tumour cells typically repress differentiation
22
Q

What are oncogenes?

A
  • mutant versions of proto-oncogenes that function autonomously without a requirement for normal growth-promoting signals
23
Q

What are oncoproteins?

A
  • proteins encoded by oncogenes
24
Q

What are oncogeneic factors?

A
  • growth factors → over-expression
  • growth factor receptors
    → over-expression or always active/”on”
  • signal transduction proteins
    → intermediates in cascade, especially G-proteins, phosphorylases, kinases
  • transcription factors
  • cyclins and CDKs
    → uncontrolled cell cycle progression
25
Q

What is the PI3 kinase pathway?

A
- growth factor binds receptors with intrinsice tyrosine kinase activity 
→ PI3 kinase 
→ PI3 kinase pathway ⊢Pten (TSG)
→ Akt (PKB) 
→ transcription factor activation  

loss of Pten and mutation in pathway → completely uncontrolled tumour growth

26
Q

What are oncogenes and TSGs?

A
  • opposing factors in cell proliferation and carcinogenesis
  • oncogene mutations cause uncontrolled growth by accelerating growth
  • TSG mutations cause uncontrolled growth by allowing continuous growth
  • Oncogenes = Her2-neu, Ras, Myc
  • TSGs: P53, Rb, APC, PTEN
27
Q

What is needed to promote carcinogenesis?

A
  • only 1 allele of oncogenes needs to be activated/mutated
  • tumour suppressor function must be lost, so both alleles must be affected
    why
    gain of function vs loss of function
28
Q

What was seen in combined PI3K pathway mutated mice?

A
  • combined PI3K pathway oncogeneic mutation and tumour suppressor loss = cancer
  • Pik3ca ~25%
  • Pten-DEL ~50%
  • tumour much bigger in double mutant rather than single gene mutants
  • single gene mutants displayed little change in ovary size
29
Q

What are TSGs?

A
  • TSGs encode proteins that inhibit cellular proliferation by regulating the cell cycle directly (e.g. Rb, p53) or inhibit oncogenic pathways (e.g. Pten)
  • unlike oncogenes, both copies of the gene must be lost for tumour development, leading to loss of heterozygosity (LOH) at the gene locus
  • in cases with familial predisposition to develop tumours, the affected individuals inherity one defective (non-functional) copy of a tumour suppressor gene and lose the second one through somatic mutation
  • in sporadic cases both copies are lost through somatic mutations
30
Q

What is loss of heterozygosity (LOH)?

A
  • LOH in a cell represents loss of normal function of one allele of a gene in which the other allele was already inactivated
  • this is a general genetic feature involving tumour suppressors in the ‘evolution’ of cancer development
31
Q

What is Knudson’s model?

A
  • two hit hypothesis for the generation of RB → LOH
  • occasional deletion of one of the two RB genes
    → occasional inactivation of other functional RB gene copy
    → excessive cell proliferation, leading to retinoblastoma
    → tumour formation
32
Q

What mechanisms regulate TSG expression?

A

an array of mechanisms

miRNA mediated control
- miRNAs are non-coding single-stranded RNAs approximately 22 nucleotides in length, that function as negative regulators of genes

epigenetic control
- dna methylation of promoter region preventing expression of TSGs

33
Q

What happens to the cell cycle in cancer?

A
  • cancer involves uncontrolled cell division
  • cell division is controlled by a mechanism = cell cycle
  • mutations in certain types of genes may lead to cancer because they directly/indirectly affect the cell cycle

ergo cancer is a disease of the cell cycle

  • cell cycle checkpoints pertubed in cancer and their regulation by opposing factors: oncogenes, TSGs
  • pRB at G1 checkpoint
  • p53 and S phase checkpoint
  • Ras and Myc (oncogenes) at G1 and G2 checkpoints
34
Q

What is the role of the cell cycle?

A
  • regulate the growth and mitotic phases
  • ensuring faithful replication and segregation of the genetic material

medical significance:
- highly regulated by many factors - oncogenes and TSGs are the factors most often mutated in cancers

35
Q

What is p53?

A
  • TSG
  • ‘the guardian of the genome’
  • p53 is a transcription factor which can regulate the expression of cell cycle factors
  • p53 targets → apoptisis, DNA repair, cell-cycle arrest, differentiation
  • defective when p53 mutated or deleted - 30-80%
36
Q

How can the evasion of apoptosis occur?

A
  1. reduced CD95 level (Fas death receptor)
  2. inactivation of death-induced signalling complex by FLICE protein
  3. up-regulation of BCL2 (anti-apoptotic)
  4. reduced levels of proapoptotic BAX resulting from loss of p53
  5. Loss of APAF-1 (??)
  6. up-regulation of inhibitors of apoptosis

extrinsic and intrinisc pathways of apoptosis
both pathways affected in cancer

37
Q

What are telomeres?

A
  • immortality
  • link between ageing, limitless replicative potential and cancer
  • in normal somatic cells, which have low telomerase activity, the shortened telomeres generated by cell division eventually activate cell cycle checkpoints, leading to senescence and placing a limit on the number of divisions a cell may undergo
  • in cells that have disabled checkpints, DNA repair pathways are inappropriately activated by shortened telomeres, leading to massive chromosal instability and mitotic crisis
  • tumour cells reactivate telomerase, thus staving off mitotic catastrophe and achieving immortality
38
Q

What is metastasis?

A
  1. detachment of tumour cells from each other
  2. degradation of ECM
  3. attachment to novel ECM components
  4. migration of tumour cells
  • there are certain tissues that are more prone to this
39
Q

What are the molecular mechanisms of metastasis?

A

adherence molecules linked to cancer signalling pathways

  • defective signalling pathways in their interactions with other cells
  • e.g. E-cadherin
  • E-cadherins normally involved in maintaining very tight junctions between cells - completely lost in cancer cells or dysregulated
  • allow escape from primary site
40
Q

What is angiogenesis?

A
  • development of new blood vessels
  • cancer cells produce lots of VEGF/VEGF-R (involved in recruiting endothelial precursor cells)
  • significant target of new generation drugs
    → sorafenib (Nexavar)
    → sunitinib (Sutent)
    → paxopanib (Votrient)
    → everolimus (Afinitor)
  • resistance to these drugs often occurs
41
Q

Are tumours homogenous?

A
  • no
  • tumour cell heterogeneity
  • a galapagis isle of disease
  • what’s the cellular basis?
  • genomic evolution
  • cancer stem cells
  • real challenge in targeting cancers
42
Q

What are cancer cell lineages and cancer stem cells?

A

tumour-initiating cells
→ allow human tumour growth when transplanted into an immunodeficient mouse
→ 0.1% to 2% of the total cellularity but could be as high as 25%

cancer stem cells arise from:

  • normal adult tissue stem cells → not likely ??
  • transit amplifing/precursor cells

cancer stem cells have a high intrinsic resistance to convential therapies

changed the paradigm of how to target tumours
- good at designing drugs that target the mass not the stem cells (i.e. cellular basis of tumour)

43
Q

What drugs target specific ‘hallmarks of cancer’?

A
  • aerobic glycolysis inhibitors → deregulating cellular energetics
  • EGFR inhibitiors → sustaining proliferative signalling
  • CDK inhibitors → evading growth suppressors
  • immune activating anti-CTLA4 mAb → avoiding immune destruction
  • telomerase inhibitors → enabling replicative immortality
  • selective anti-inflammatory drugs → tumour promoting inflammation
  • Inhibitors of HGD/c-Met → activating invasion and metastasis
  • inhibitors of VEGF signalling → inducing angiogenesis
  • PARP inhibitors → genome instability and mutation
  • proapoptotic BH3 mimetics → resisting cell death