Lecture 13 - Alternative splicing Flashcards
why is pol II particular
because of the CTD tail
When can you recruit spliceosome parts
as soon as the 5’ end of the mRNA transcript is out of pol II
Enzymatic activity associated to CTD tail is ______________ dependent. What are the 3 types of enzymes recruited.
phosphorylation. Capping factors. Poly(A) factors. Splicing factors
Why alternative splicing is advantageous and how
More exons shuffling and few gene mutants. Since alternative splicing happens with most genes, less DNA is required (less DNA to replicate, maintain, etc.)
Alternative splicing is all about __________ splice sites. How does it do that/principle ?
defining splice site. RNA binding proteins (with rna binding motifs) promote or block recognition of a splice site by components of the spliceosome.
Exemple of alternative splicing
Fibroblast fibronectin mRNA contains EIIIB and EIIIA part of the fibronectin gene whereas hepatocyte fibronectin doesn’t contain EIIIA and EIIIB part of the fibronectin gene.
In figure with the fibronectin gene, what does each colour and each square correspond to ?
each square is an exon. each color is a biochemical particularity that will be obtained in the protein.
what is the advantage of shuffling exons
each exon is a particular function in the protein so shuffling them creates a diversity of proteins with different functions
Are all exons spliced ? explain
No. You can have exons that are not spliced w/ other exons and that go out w/ introns.
What proteins help define true splice sites
SR (Ser-Arg) rich proteins that bind to exonic splicing enhancers (ESE -> sequences in exons) … bind with their motifs.
Alternative splicing controls ____________ in Drosophila. How does it work ?
sex determination. Genes in X and Y chromosomes recruit different splicing factors -> different proteins -> sexually dimorphic characteristics
Because females in drosophila have 2 __________, __________ gene is expressed only in ______ in early ____________. 2 __________ = activation of ______________. _____ gene is under ___________.
X chromosomes, sex-lethal (Sxl), females, early embryogenesis, X chromosomes. early promoter. Sxl gene is under transcriptional control
What happens later in development concerning promoters of Sxl gene in female drosophila
Early promoter is repressed and different Sxl promoter is activated IN BOTH SEXES
Why there is a difference in late Sxl expression in male and female drosophila
Sxl pre-mRNA is alternatively spliced depending upon PRESENCE OF SXL PROTEIN. (already present in females !)
Sxl gene (exons) in drosophila. Particularity of one of them
3 exons. From 5’ to 3’ : exon 2, exon 3, exon 4. Exon 3 has a premature termination codon.