Lecture 1 & 2 Flashcards
what is biochemistry
study of the molecular basis of life
scientific study of the chemical substances and processes of living matter.
Biochemistry can explain processes within other life science disciplines such as
Biotechnology and bioinformatics
Cell biology and signaling
Development and disease
Energy and metabolism
Genetics
Molecular biology
Plant biology
Pharmacology and ototoxicity (it is biochemistry at its core)
what is an ion
an electrically charged atom or molecule formed by the loss or gain of one or more electrons
Each ring of an atom has a maximum number of electrons that it can hold
truee
The first (inner) ring can only hold
two electrons
The second level can hold
eight electrons
The third can hold
18 electrons
The fourth holds
32 electrons
positive charged ion – Na+
cation
negative charged ion – Cl-
anion
If an atomic shell has lost electrons, there will be more protons than electrons, giving the ion a _____ charge, one for each unbalanced proton
positive
If electrons are added to a shell, there will be more electrons than protons and the ion will be ______ charged, one for each extra electron
negatively
Such substances are also called electrolytes because
they facilitate conductance of electrical current
The electrostatic attraction between +ve & -ve ions brings the particles together and creates an
ionic compound, such as sodium chloride – NACL (salt)
what is a molecule
the smallest unit of a pure substance that has all of the properties of that substance
made up of two or more atoms linked by a chemical bond
molecule
The number of protons in the nucleus of the atom is equal to the
atomic number (Z)
In general, atoms are most stable, i.e., least reactive, when
their outermost electron shell is full
what makes up an uncharged atom
equal number of electrons and protons
An uncharged atom (equal number of electrons and protons) may have balanced charges
true
But if its outer shell is not full it will be
chemically unstable
what is a radical
an uncharged atom that has an outer shell not full and is chemically unstable?
In humans, free oxygen radicals are released from many processes of cell chemistry
true
But too many free radicals damage other molecules over time, producing
some aging effects and probably some cancers
what is a compound
combination of < 2 elements with a chemical union
These elements combine in a reproducible way
They can be converted into simpler forms by chemical means
loss of electrons = more protons = positive = anion
false
cation
what is an example of a cation
sodium
gain an electron = more electrons = negative = cation
false
anion
what is an example of an anion
calcium?
CL-
what makes an ionic compound & an example
electrostatic attraction between +ve & -ve ions brings the particles together and creates this
sodium chloride – NACL (salt)
common ions in the body & cochlea include
Na+, K+, Cl-
does perilymph have high or low potassium
low
endo has high
The smallest unit of an element that retains the chemical properties of that element.
atom
electrically neutral, meaning the number of protons (positive charge) equals the number of electrons (negative charge)
atoms
An atom or molecule that has gained or lost one or more electrons, giving it a net electric charge.
ion
A group of two or more atoms bonded together, representing the smallest fundamental unit of a chemical compound that can take part in a chemical reaction.
molecule
what are the differences between atoms, ions & molecules
Atoms are single units of elements with no charge (neutral).
Ions are charged atoms or molecules due to the loss or gain of electrons.
Molecules are combinations of two or more atoms bonded together, which can be either neutral or charged (if they form ionic compounds).
atoms are the building blocks of matter, ions are charged versions of these building blocks, and molecules are combinations of atoms bonded together.
molecules or atoms that have an unpaired electron. This unpaired electron makes radicals highly reactive and capable of engaging in chemical reactions with other molecules.
radicals
molecules or atoms that have an unpaired electron. This unpaired electron makes radicals highly reactive and capable of engaging in chemical reactions with other molecules
radicals
molecule, atom, or ion that has an unpaired electron in its outer shell.
This unpaired electron makes free radicals highly reactive, as they tend to seek out and capture electrons from other molecules to achieve a more stable electron configuration.
\
free radical
chemically bonded substance composed of two or more different elements in fixed proportions, exhibiting properties distinct from those of its individual elements
compound
what are examples of compounds
Water (H₂O): A compound made of two hydrogen atoms bonded to one oxygen atom.
Sodium Chloride (NaCl): An ionic compound made from sodium ions and chloride ions
combination of two or more substances that are physically combined, not chemically bonded, and can be separated by physical means.
mixture
the components of a mixture retain their individual properties and can vary in proportion
mixture
heterogeneous mixture, is a type of mixture in which the components are not evenly distributed throughout the mixture.
Non-uniform mixture
reproducible no matter how many times you do it & you can break it down
compound
In biology, structures exist at all levels of organization, ranging in hierarchy from
Atomic
Molecular
Cellular
Tissue
Organ
Organism (a form of life, for e.g., an animal)
Population
Ecosystem
Usually, a higher-level structure is composed of multiple copies of a lower-level structure
true
An organism consists of
atoms, molecules, cells, and tissue
Chemistry is the branch of science that deals with
Identification of the substances of which matter is composed
The investigation of the properties of substances
The ways in which substances interact, combine, and change
The use of these processes to form new substances
graphical representation of the molecular structure showing how the atoms are arranged
structural formula
biomolecular structure of a protein molecule
protein structure
what are proteins
polypeptide sequences formed from the building blocks of many amino acids
everything in the body is
proteins
what are the different types of bonds
covalent
non covalent
what are examples of non covalent bonds
Electrostatic bonds (ionic)
Hydrogen bonds
Hydrophobic attractions
van der Waals bonds/forces
what are covalent bonds
bonding that happens bw nonmetals
sharing of a pair of electrons between two atoms on different molecules
covalent
found in molecules where atoms are bonded together by shared electrons.
covalent bonds
strongest bonds in the body
covalent
why are they the strongest covalent bonds in the body
it takes a lot of energy to break them
covalent bonds are typically involved in drug receptor interactions
FALSE
they are not
why are covalent bonds not involved in drug receptor interactions
medication has to come, attach to cell membrane and then go away
NEVER INVOLVED IN DRUG RECEPTORS because it has to make a change and then go away
special type of force between a positive hydrogen atom and an electronegative atom, such as oxygen, nitrogen, or sulfur
hydrogen bon
weaker than covalent and ionic bonds
hydrogen bond
When atoms are close together, and several bonds are formed it ______ the strength of the bond
increases
igher boiling points than similarly sized molecules that do not have an -O-H or an -N-H group
hydrogen bond
makes the molecules “stickier”, and more heat is necessary to separate them
hydrogen bonding
Hydrogen bonds perform critical functions in the body, including
Holding the two strands of the DNA double helix together
Holding polypeptides together
Helping enzymes bind to their substrate
Helping antibodies bind to their antigen
Helping transcription factors bind to each other
Helping transcription factors bind to DNA
electrostatic bonds between two ions of opposite charges
ionic bonds
one has to be a metal and the other a nonmetal
ionic bonds
electrostatic bonds between two ions of opposite charges
ionic bonds
transfer of > one electrons from a metal onto a non-metal
Atoms with an excess of electrons (-vely charged atom) are attracted to atoms with a deficiency of electrons (+vely charged atom)
ionic bonds
he most effective force in attracting drug molecules to a receptor site
ionic bon
Sodium (Na) (alkaline metal) and Chlorine (Cl)
ionic bond
Chlorine atom takes an electron from the sodium atom converting the atoms into ions (Na+) and (Cl-), which are now held together by their opposite electrical charge
ionic bond
Molecules can attract each other at moderate distances and repel each other at close range
van der waals bonds
residual attractive/repulsive forces between molecules or atomic groups that do not arise from a covalent bond, or electrostatic interaction of ions, or ionic groups with one another, or with neutral molecules
van der waals bonds
The bigger the atom or molecule the bigger the
Van der Waals’ force
describe van der Waals forces
They are the most common bond between atoms
They are weaker than covalent, ionic, or hydrogen bonds
These forces operate only when molecules pass very close to each other
They provide a weak force for some drugs and their receptors
what is the strongest bond that happens in the environment or body
covalent