Lec 08: Membrane Proteins and Transport Flashcards
What are some ways membrane proteins can associate with other membranes? (Figure 10-17)
- Integral/transmembrane proteins 2. Peripheral membrane proteins 3. Lipid anchored membrane proteins 4. Membrane associated proteins
Polypeptide chain of transmembrane proteins
often cross membrane as a-helix
Cytosolic side chains of transmembrane polypeptide
-non-polar: gly, phe, leu, ala, thr (cytosol) -polar: his
extracellular space side chains of transmembrane polypeptide
-non-polar: ile, ala, cys, gly, phe, ala -polar: his, ser, tyr
Polarity of peptide bonds in transmembrane proteins
polar (number of hydrogen bonds are maximized in a-helix)
How can transmembrane helices be predicted?
amino acid sequence (hydropathy plot)
Mechanism of membrane spanning helices
-helix bending = loss of hydrogen-bonds ((exception: helices don’t contact lipids)
Transmembrane B-barrel
-proteiens crystallize readily -relatively rigid
Lipid anchors mediate?
Lipid anchors (fatty acid chain) mediate membrane association of some proteins
3 lipid anchors
- myristoyl 2. palmitoyl 3. farnesyl
myristoyl anchor
amide linkage between terminal amino group and myristic acid
palmitoyl anchor
thioester linkage between cystein and palmitic group
farnesyl anchor
-prenyl chain thioether linkage between cysteine and prenyl group
The membrane association of many signaling proteins is controlled by?
lipid anchors
Src family kinases lipid anchors
-are myristoylated → This anchor alone mediates only weak membrane association → Kinase activation results in addition of a palmitic acid to cysteine
Rab GTPases (lipid anchors)
-lipidated -C-terminal cysteines are modified with 1-2 geranylgeranyl anchors → Anchors are displayed in GTP-bound, but not GDP-bound state
How are Extracellular moieties of proteins modified?
→ Glycosylated → Formation of disulfide bridges
How do glycosylated extracellular moieties of proteins modified?
highly varied sugar modifications that mediate specific cell-cell interactions
glycocalyx formed by?
- Glycosylated lipids and proteins (glycoproteins and proteoglycans) - Adsorbed glycoproteins (compounds of extracellular matrix)
glycocalyx function
-protect against mechanical/chemical insults (low pH, digestive enzymes) -prevents unappropriated cell-cell interactions