L2 and 3 Kerry Franklin - Light responses Flashcards

1
Q

What is photomorphogenesis?

A

Plant development controlled by light quantity, direction, periodicity, and quality.

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2
Q

what is a photoperiod?

Give an example of photoperiod affecting photomorphogenesis

A
  • the length of light (of a ‘day’)

- Chrysanthemums are short day plants - flowers in 8h days. no flowers in 16h days.

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3
Q

describe etiolated and de-etiolated apearence of arabidopsis seedlings

A

Etiolated - dark grown - Long hypocotyl, cotyledons folded up in apical hook. If cotyledons were open, would be damaged in soil.
De-etiolated - light grown - large cotyledons, short hypocotyl.

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4
Q

What is a monocot version of the apical hook?

A

coleptie

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5
Q

Which photoreceptors detect red/far red light?

A

Phytochromes

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6
Q

Which photoreceptors detect blue light?

A

Cryptochromes, phototropins

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7
Q

What two components are in a phytochrome molecule?

A

Protein - Apophytochrome

Chromophore

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8
Q

What is a chromophore?

A

A light absorbing molecule, formed by Protoporphyrin in the chloroplast.

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9
Q

Wha does the chromophore and the Apophytochrome together make?

A

holophytochrome

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10
Q

Which is the active and inactive phytochrom form?

A

Pr- inactive
Pfr - active, regulated gene expression.
Red light favours activation, and far red light favours inactivation.

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11
Q

Describe the flip flop germination experiment.

A
  • Under red light, arabidopsis seedlings germinated (Pfr)
  • Under red then FR light, Pfr converted into Pr so no germination
  • Red, FR then Red again, germination, as the final molecule was Pfr
  • Shows he last molecule present caused germination or not germination.
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12
Q

What phytochrome types do dicots and monocots have?

A

Dicots - (A,C) (E, B, D)

Monocots - (A, C) B

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13
Q

What are the functions of phytochromes?

A

Germination timing
Suppress flowering, plant energy is used for leaves and photosynthesis.
Regulate development through lifecycle
Regulate plant architecture

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14
Q

How can you use genetics to determine phytochrome function?

A
  • create mutants with genes defective in phytochrome function
  • Compare photoresponses with wild type, to determine what the phenotype is of the mutated gene
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15
Q

What does a light grown phya mutant look like?

A

Long hypocotyl.

Phy A supresses hypocotyl elongation in light.

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16
Q

Describe photoresponses in Dark, Red, FR and blue light

A

dark - long hypocotyl, cotyledons inside apical hook
Red - small plant, cotyledons open
FR - small, open cotyledons and yellow
Blue - Taller, small cotyledons

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17
Q

Why is it weird that phyA signals in far red light?

A

It gets inactivated in far red light, Pfr -> Pr

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18
Q

How does phy a manage to signal in FR light even though it gets inactivated?

A
  • Pfr is rapidly degraded, and more Pfr = faster degradation.
  • accumulates to high levels in dark grown seedlings
  • FR is very inefficient at producing Pfr, so cycling between Pr and Pfr causes a signal and protects it from degradation.
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19
Q

Simply, what does Phy A do?

A

Acts as a sensitive light antenna, which rapidly degrades and triggers photomorphogenesis following soil emergence.

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20
Q

What do plants with less phytochromes look like?

A

Long and spindly, early flowering

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21
Q

How do plants adapt in an enclosed habitat to low light conditions?

A

Shade tolerance mechanisms. Adapted to endure shade, with thinner leaves, higher chlorophyll content, increase photosynthetic efficiency.

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22
Q

How do plants adapt in an open habitat to low light conditions?

A

Adapted to escape, shade avoidance techniques.

Elongate leaves and stems to overlap competitors

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23
Q

in sunlight are phytochromes mainly active or inactive?

A

Active, more Pfr, as sunlight has more red than FR light.

24
Q

Why is having more Pfr in sunlight beneficial?

A

Keeps stems short so energy and resources are directed at leaf development, for photosynthesis.

25
what causes shade avoidance photomorphism?
Plants grown around neighbours receive mainly red light from sun, and green and FR reflected off other plants. Lowers R:FR ratio compared to just sunlight. This shifts Phytochrome back to Pr form. low R:FR triggers IAA production and it is pumped down the plant, driving shade avoidance.
26
what are rapid responses of shade avoidance?
``` Leaf hyponasty - increased leaf angles increased internode extension increased petiole (leaf stem) extension. ```
27
what are long term responses of shade avoidance?
Reduced: branching, leaf area, leaf thickness, reduced chlorophyll synthesis, accelerated flowering
28
Why does crop density affect shade avoidance?
If dense, more FR light is reflected so more shade avoidance
29
What is lodging?
Falling over of stems in cereal crops. Caused by excessive elongation of stems due to excessive shade avoidance
30
What limits shade avoidance
Phy A signalling | Shown by shaded phy A mutants which over elongated and died. WT was fine.
31
What else causes leaf elevation?
Touch - of other plants Shown by Wil et al 2012 one leaves are elevated, plants start reflecting FR light and shade avoidance begins.
32
What is skotomorphogenesis
development in dark
33
What 6 hours of blue light photoreceptors are there?
Cryptochromes 1 and 2 Phototropins 1 and 2 ZTL FKF1
34
What gene defines a blue light photoreceptor?
HY4 | The HY4 mutant was long and spindly in blue light
35
What does the HY4 gene encode?
The protein component of Cyptochrome 1
36
What was HY 4 renamed?
CRY1
37
describe the structure of CRY1
2 chromophores: Pterin, FADH- | attached to photolyase-like protein. also has a Tropomyosin like protein.
38
What does CRY2 do?
enhances sensitivity to low levels of blue light, also promotes flowering in long days. Mutant has elongated hypocotyl in high irradiance blue light, whereas WT is short.
39
what partially inactivates chryptochromes?
green light
40
What type of light regulates phototropism?
Blue light
41
describe Darwin's experiment on phototropism
1880 flame put next to grass coleoptile - coleoptile curves towards light - with cap on tip, no curvature - with shield lower down coleoptile, still curves. Shows tip perceives light and communicates with another location where response is carried out.
42
what is nph1 mutant and how was it found?
non phototropic hypocotyl 1 Screened plants by first growing in the dark, then applying blue irradience light from the side Mutants did not bend towards light. Found nph1 gene encodes protein component of phototropin 1
43
describe the structure of phot1
2 chromophores - flavins, non covaletly bonded to LOV 1 and 2 domains on protein. also has a kinase domain on protein.
44
What are 4 functions of phototropins?
1. phototropism 2. regulates chloroplast movement 3. regulates stomatal opening 4. Leaf development
45
how does blue light stimulate choroplast movement?
In low irradiance- chloroplasts on top and bottom of cells. to get max light for ph In high irradiance - chloroplasts move to sides of cell to protect from damaging light levels phot2 mostly responsible, encoded for by npl1 gene.
46
how do phototropins regulate stomatal opening?
blue light dependent, drives phototropin action In double PHOT1 and PHOT2 mutants, stomatal aperture is similar in blue light to dark. no response to blue light in double mutants.
47
how do phototropins regulate leaf development?
in either phot1 or 2 mutants, same as WT - leaves flattened in double mutant, eaves curled Only one phototropin is needed for leaf development.
48
what was seen when using GFP to study photoreceptors?
Can attach GFP to phytochrome in dark, phytochrome is equally dispersed through cell. In red light Pfr aggregates in the nucleus of the cell. Pr cannot get into nucleus.
49
What happens to phytochrome in the nucleus, in Red light?
PIFs - phytochrome interacting factors bind to Pfr. | Promotes dark deveopment, then Pfr degraded and PIF destroyed. When PIF is destroyed, cant regulate gene expression.
50
What is an example of constitutive photomorphogenesis?
COP signalling
51
how were COP'D mutants found?
Screened for de-etiolated mutants when seedlings grown in dark (WT have etiolated appearance).
52
COP signaling???
In the dark: CRY1 is in nucleus but in active. COP1 degrades HY5 transcription factor, forming COP9 complex. Seedlings in dark can use a different transcription factor to promote etiolated growth. In light: Pfr active. binds to COP1 in nucleus. COP1 can no longer degrade HY5. HY5 switches on all genes needed for photomorphogenesis.
53
Why dont plants get sunburnt?
UVB is reflected by hairs and waxes. Effective DNA repair - cryptochromes continuously repair damaged DNA. similar to DNA photolyases. UVB stimulates upregulation of 'sunscreen'
54
How does UVB exposure promote plant survival?
activation of genes involved in UVB protection | eg - antioxidant enzymes, DNA photolyases, flavenoid biosynthesis enzymes
55
how was the UVB photoreceptor found?
mutants defective in UVR8 and HY5 gene could not survive as they couldnt perceive UVB and make sunscreen.
56
Describe UVR8 structure and signalling
It has an internal chromophore made of a cluster of tryptophan molecules which absorb UVB. UVB stimulates UVR8 + COP1 interaction = HY5 stabilisation = photomorphogenesis