KB L1-3 Flashcards
What three transcriptional regulators make cells specific?
Epigenetics
Trans- acting elements
Nc-RNA
Drosophila is advantageous to study development because? (6)
Small Short generation time (9 days) Lots of mutant Phenotypes Fate maps available for certain areas Only around 13,000 genes Complete genome sequence available
What other model systems are there (than dros?)
Nematode worm - simplest organism with a nervous system
Zebra fish - embryo is visible during development
Mouse - common mammal due to sequencing o
General structure of a transacting domains
DNA binding domain with ATTA binding motif
Transregulatory domain, interacts with other components of the transcription machinery to help regulate gene expression
Stages of drosophila development
Day 0 - fertilisation Embryonal development Day 1 hatching Larva - 3x larval stages with Sep motifs Day 5 pupation Pupa Metamorphosis Day 9 adult
What time frames are transcription factors influencing developmental decisions?
Integration of long and short signals through the action range of the transcription factors
Order of drosophila segmentation
Egg-polarity genes (bicoid) - head and tail are defined, maternal effect genes
Gap genes - Kruppel and Hunchback - expressed in larger overlapping domains
Pair-rule (Evo and ftz) - define seven segments each so get 14 segments
Segment polarity genes (engrailed) - anterior and posterior of each segment, expressed in each of the 14 segments
Hox genes - tells segment what they are going to become. Defining the areas of the organism ie thorax and abdomen
If you delete drosophila segment genes what happens
The are where the genes were expressed will be missing and the expression of genes down stream of the mutation will be affected showing a hierarchy of gene expression
What does Evo stand for?
Even-skipped
What results in evo being turned on?
Several types of signalling. Pathway in a cluster of mesodermal cells
What tissue develops cells expressing evo and what does it go on to make?
Muscle develops cells expressing evo and goes on to make heart and body wall muscle
what is evo regulated by in mesoderm?
An enhancer, and within the enhanced there are sites that bind regulatory factors that are at the end of receptor tyrosine kinase signalling pathways and regions that bind to factors from wingless and decapentapleigic signalling systems plus a binding site for twist (specific to undifferentiated mesoderm) and tinman (marker for dorsal mesoderm cells)
What did halfon et al show about binding sites in the evo enhancer?
By mutating the binding sites halfon shows that they are all needed to achieve proper expression of evo. The signalling and receptors is like a code deciphered by the enhancer
There is homology between genes that control organ formation in humans and flies what does this mean?
That we can study flies as model organisms for organ development
What mutant phenotype led to the formation of hox genes?
Antennapedia
What do all bilateral animals possess?
A common genetic mechanism for patterning the A/P axis involving the hox cluster
Properties of the homeodomain
183bp, Very basic protein domain 30% K and R Secondary structure is HTH motif Hox TF bind ATTA One of the helices sits in the major groove making contact with the bases
Structure of a typical homeodomain
Variable region Homopeptide (highly conserved) Intron Homeodomain Acidic tail
In hox LOF transformations mutants what happens?
Affected body structures resemble of anterior ones.
What are gof mutant hox Phenotypes due to?
ectopic expression of more posterior hox genes which are capable of cancelling out the function of more anterior ones
What is an example of posterior prevalence?
Abd-A is the posterior most region of the fly embryo. When under control of a heat shock promoter all head and thoracic segments attain a more posterior like identity
What occurs on hoxc8 -/- mutant
= attachment of the 8th pair of ribs to the sternum and appearance of a 14th pair of ribs on the first lumbar vertebra
What is ubx protein
Ultrabithorax identified by mutations that transform halteres (balancing organs in flies) into an extra pair of wings
What does ftz activate?
Ubx and antp