Investigative techniques Flashcards
What are the requirements of light microscopy?
- Preservation
- Embedding
- Staining
How are tissues preserved for imaging?
Formalin
What is the purpose of melted paraffin in tissue processing?
Embeds the tissue allowing it to be sliced into 5 micrometers (um) once the paraffin has set.
What is tissue stained with for light microscopy?
Haemotoxylin and eosin
Haemotoxylin - stains nucleus strongly blue
Eosin - stains cytoplasm and extracellular matrix pink
What is a frozen section?
Used during surgery for quick histological techniques.
- Specimen is placed on a metal disc and frozen rapidly to -20 to -30C
- Cryostat (microtome in a freezer) slices the specimen into thin slices
- Stained with haemotoxylin and eosin
What are the differences between traditional staining and frozen section?
- Frozen sections are quicker than traditional methods (10 minutes vs 16 hours)
- Technical quality of frozen sections is much lower
How is gout diagnosed?
Polarised light microscopy visualises monosodium urate crystals commonly in the metatarsophalangeal joint.
Crystals are needle-shaped, strong negative birefringence yellow when parallel to compensator ray.
What is gout?
Inflammatory arthritis developing when someone has high levels of uric acid in the blood.
How is pseudogout diagnosed?
Calcium pyrophosphate dihydrate (CPPD) crystals.
Rod or rhomboid, weak positive birefringence. Blue when parallel to compensator ray. Most commonly affects the knee joint.

What is fluorescence microscopy?
Fluorophores emit light when irradiated by a specific wavelength. Used for cancer cell type differentiation. Molecules are excited by a specific wavelength to emit a certain light.
What is confocal microscopy?
Optical imaging technique used to build up a 3D image of a specimen by taking images of multiple planes. Resembles the imaging process in computed axial tomography scanning (CAT scans).
What is immunohistochemistry?
Selectively images tissue using antibodies to test for specific antigens. Antibodies are normally linked to enzymes or dye for visualisation. Aids diagnosis of cancer.
What is direct immunofluorescence?
Antibody is labelled with fluorescent dye before being added to the tissue.
What is indirect immunofluorescence?
Antibody is labelled after it has bound to the antigen through anti-immunoglobulin serum.
What is autoradiography?
Use of an x-ray to detect radioactive materials.
- photographic emulsion is used to visualise molecules labelled with a radioactive marker
- marker is injected into the live animal/cell culture
- histological section is coated with the emulsion
What is a radionuclide scan?
A way of imaging bones, organs and other components of the body through a small dose of radiation. Example: Iodine131 scan shows enlarged thyroid gland.

What is the resolution and magnification of modern light microscopy?
- Magnification: 1000x
- Resolution: 0.2um
What is ultrasound scan?
Also called a sonogram. High frequency sounds waves are emitted by an ultrasound probe which then echoes off structures of the body to be received in an image.
When does the frequency of wavelengths affect the resolution of an image?
The image of two particles cannot be seen individually if it is smaller than the wave length.
What is transmission electron microscopy?
Microscopy technique using beams of electrons in a vacuum to create an image. Portions of the beam that passes through the tissue appears bright, portions that have absorbed or scattered the tissues appear dark.
Resolution: 400 times light microscopy (0.2um)
Magnification: 250,000 x
What is the preparation for a transmission electron microscope?
- Fix: Glutaraldehyde
- Embed: Epoxy resin
- Stain: Osmium tetraoxide
- Microtome: diamond knives
What is a freeze fracture electron microscopy?
Tissue is frozen -160C and then fractured by hitting a knife edge. Interior of the cell membrane is then exposed which can be imaged.
What is scanning electron microscopy?
The surface is scanned with a focused beam of electrons which is reflected back to a cathode ray tube to create an image.
What is x-ray crystallography?
Determines the atomic and molecular structure of a crystal by firing x-ray beams to diffract into different directions which can be measured. Diffraction is dependant on electron density
What is nuclear magnetic resonance (NMR) spectroscopy?
Gives details of the electronic structure of a molecule as the intramolecular magnetic field around an atom changes the resonant frequency.
What is magnetic resonance imaging?
A type of NMR spectrometry. Strong magnetic fields and radio waves are used to produce detailed images of inside the body.
Used to examine:
- brain and spinal cord
- bones and joints
- breasts
- heart and blood vessels
- internal organs (liver, womb or prostate gland)