intro to micropbiologosoo Flashcards

1
Q

nomenclature is

A

labeling/naming of the groups and the members of organisms

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2
Q

Binomial system

A
  • Genus and species names – should be universal around the globe
  • Both components are either italicised OR underlined
    First letter of genus is always Capitalised
    • Species designation is always lowercase
    • Genus may be abbreviated to first letter i.e. S.aureus after first full use in text
    • Species name is never abbreviated
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3
Q

% of organisms harmless

A

est 87%

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4
Q

what is opportunistic

A

under certain conditions and environment they can be harmful

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5
Q

% of organisms that are opportunistic

A

10%

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6
Q

% of organisms are considered to be overtly pathogenic

A

3%

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7
Q

Normal flora is

A

he microbes that naturally inhabit surfaces of the human body

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8
Q

normal flora occur at sites

A

exposed to, or that communicate with the external environment
e.g. skin, nasal passages, mouth, throat, urogenital tract, intestinal tract
– Blood, tissues, lower respiratory tract are regarded as sterile
– Includes bacteria, fungi, protozoa and viruses

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9
Q

where can most normal flora be found

A

large intestine

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10
Q

Robert Hooke (1665)

A

– Wrote first book detailing observations with a microscope
– First person to describe a ‘cell’
potentially plant or skin cell (large one)

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11
Q

Antoni van Leeuwenhoek (1673)

A

– Developed a microscope with a moveable stage
– First to describe bacteria including their shapes
– Very secretive, knowledge lost for over 100 years

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12
Q

Louis Pasteur (1861)

A

Disproved theory of spontaneous generation (Abiogenesis)
– Discovered pasteurisation (originally used to prevent spoilage of wine)
debunked the idea peps got sick spontaneously

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13
Q

Joseph Lister (1870)

A

Credited with developing antisepsis for surgery

– Experimented with dressings soaked in carbolic acid (used as an antiseptic)

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14
Q

Robert Koch (1883)

A

First to study Anthrax and Tuberculosis (bacteria that cause them)
– Found that microorganisms can invade other organisms and cause disease
• Koch’s postulates - germ theory of disease
– Contributed to developing staining methods for microbes
- certain microbes cause certain diseases

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15
Q

Ignaz Semmelweis (1847)

A

First to use handwashing in clinical practice
In 1847 in Vienna, he introduced handwashing – reduced obstetrics mortality from 18% to <1%
Physicians continued to refuse to wash hands….came from high society so essentially low society is the problem not them
Hand washing only accepted years later after work by Pasteur, Lister, Koch

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16
Q

Koch’s Postulates (Germ Theory) steps

A
  1. The specific causative agent must be found in every case of an infectious disease
  2. The disease organism must be isolated in pure culture (prove its there)
  3. Inoculation of a sample of the culture into a healthy, susceptible animal must produce the same disease
  4. The disease organism must be recovered from the infected animal

Summary: A specific infectious disease is caused by a specific microbe

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17
Q

3 domains classification of life

A

Eubacteria (same as bacteria)
– Gram positive/negative bacteria
– Cyanobacteria
– obtain energy through photosynthesis

Archaea (specialised single cell organisms that resemble bacteria)
– Methanogens – grow in the absence of O2 and produce methane (CH4)
– Halophiles – grow/live in areas of high salt concentration (>5 times ocean 3.5%, >17%)
– Thermophiles – grow in areas of high temperature (45 ̊C to 122 ̊C)

Eucarya
Protozoa – Algae – Fungi – Plants – Animals

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18
Q

classifications of microorganism

A

prokaryotes

eukaryotes

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19
Q

prokaryotes structure + types

A
• Archaea • Bacteria
lack a nuclei in cell
No nucleus - DNA unenclosed 
No nuclear membrane
Smaller 0.1 – 10 μm
Complex cell walls e.g. peptidoglycan

capsule - nucleoid - cell wall + membrane - ribo - flag - fimbriae

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20
Q

eukaryotes structure + types

A
  • Fungi
  • Protozoa
  • Algae

DNA inside nucleus surrounded by a Nuclear membrane
cell membrane NB: Not a cell wall
Larger 10 – 100 μm
Animals and Protozoa lack cell walls • Have a cell/plasma membrane contain a nuclei in cell
Plants, algae and fungi = simple cell walls
golgi = nucleus with nucleolus - ER - ribo

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21
Q

Algae

A
• Eukaryotes
• Photosynthetic (contain chlorophyll like plants)
      – Obtain energy from sunlight
• Produce most of the world’s O2
• Food for water life (phytoplankton) • 

Unicellular or multicellular
- Multicellular e.g. large algae - seaweed, kelp - Unicellular - ponds, lakes, oceans e.g. diatoms

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22
Q

Protozoa

A

Single celled Eukaryotes
Most are motile (can move by themselves)
– Psuedopodia, cilia or flagella
Live mostly in water, some in animal hosts & cause disease
e.g. malaria and several that cause diarrhoea

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23
Q

fungi differs from animals and plants and types

A

Differ from plants because fungi do not use photosynthesis to obtain energy
Differ from animals because fungi have a cell wall

Two types:
Moulds
Yeasts

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24
Q

mould

A

fungi
– multicellular
– produce hyphae (filaments)
– reproduce sexually and asexually (spores)

25
yeast
fungi – unicellular, oval or round – reproduce by budding (asexually)
26
bacteria
* Prokaryotes - single cells * Do not have a nuclei * Smaller (0.5-2 μm wide x 0.5-5 μm) than eukaryotes (10-100 μm) * Most are differentiated by the Gram stain (based on their cell wall structure) * Cell walls contain polysaccharide and peptidoglycan * Some bacteria do not have a cell wall (only a plasma membrane) e.g. Mycoplasma sp.
27
viruses
Very small (10 – 300 nm) – Only seen with an electron microscope – First photograph of a virus 1939 Simple (not cellular) – Nucleic acid (RNA or DNA, not both) – Surrounded by protein coat (capsid) – Some have lipid envelope ``` Lack cellular structure – no cell membranes – no metabolism – can not reproduce independently – can only replicate inside a host cell (using host metabolis ```
28
A virus that infects a bacteria is called
bacteriophage
29
gram pos bacteria have + colour
• Thick layer of peptidoglycan • Teichoic acid & lipoteichoic acid purple
30
gram neg bacteria have + colour
• Thin layer of peptidoglycan • Outer membrane (lipopolysaccharide) pink
31
gram stain process
- heat fix smear on slide (bacteria are not dead!!!) - Crystal violet (30 sec, stains all bacteria) - Lugol’s Iodine (30 sec, fixes stain) - Alcohol or Acetone (15sec/1sec, decolourisation) - Carbol fuchsin – 30sec (Counter stain) Bacteria are still NOT dead!!!
32
what glycocalyx and its types
gelatinous material which coats the surface of some bacteria capsules slime
33
capsules is type of and describe it
``` glycocalyx • Highly organised • firmly attached • protect against phagocytosis • some bacteria are typed by capsule composition – Haemophilus influenzae B – Hib ``` actual slime like layer
34
slime is type of and describe it
``` glycocalyx • not highly organised • not firmly attached • helps bacteria to slide on surfaces • protect from drying ``` hard cover layer
35
fimbriae are
spikes lots on bacteria sticky - hard to rid of adherence ONLY
36
pili
1 or 2 long spike on bacteria Adherence Conjugation
37
Polar distributions of bacterial flagella* types and structure
monotrichous - one weave lophotrichous - multi weave one side amphitrichous - multi weave both sides peritrichous distribution - weaves all around Flagella – motility ONLY
38
Endospores are for
survival
39
how do bacteria grow and time
Reproduce by an asexual process called binary fission – Single cell splits into two identical daughter cells – Chromosome duplicates – Same genetic material in both daughter cells Generation time – how long it takes to double cell numbers – Varies with organism: • 15-20 minutes to 24hours, or longer – Depends on environmental conditions & location • in vitro(in laboratory) may be faster • in vivo( in human body) may be slower
40
Bacterial growth curve phases
Lag phase Exponential phase Stationary phase Death or decline phase Lag - inoculation, bacteria sensing environment, switching on stuff to make use of nutrients, consistent number Exp - all switch and bacteria starts metabolising, Stat - death = new orgs increases
41
variables for bacterial growth
atmosphere, temperature, pH, nutrients (metabolism), moisture
42
atmospheric types and condictions
Obligate aerobe – Oxygen is essential for growth – Grow in air (78% Nitrogen, 21% Oxygen, 0.04% CO2) – Microaerophiles • Requires low levels of O2 (must have some, 6-16%) Obligate anaerobes – Unable to grow in O2 grow – Will only grow in the complete absence of O2 Facultative anaerobes – able to grow with or without O2 Carboxyphiles (Capnophiles) – Grows best with increase concentration of CO2 (2.5 to 5 to10%)
43
Catabolism
larger molecules broken into smaller molecules – Energy released (exergonic) breaking
44
Anabolism
larger molecules from smaller molecules – Requires energy (endergonic) creating
45
oxidation
electron(s) loss
46
Reduction
electron(s) gain
47
Respiration produces how many ATP + oxygen reqs
lots of ATP and CO2 and H2O | oxy required
48
Fermentation produces how many ATP also oxygen requirements
produces low ATP | complete absence of oxy
49
Mutualism
Symbiotic relationship where both members benefit e.g. Gut flora including E. coli and Bifidobacterium sp.
50
Commensalism
Symbiotic relationship where one member benefits without affecting the other
51
Parasitism (amensalism or antagonism)
Relationship where one member benefits while the | other is harmed e.g. pin worm, malaria, lice (pubic and head), syphilis, gonorrhoea
52
stages of infectious disease
Incubation period – Colonisation (must overcome host defenses) Pathogens assisted by their virulence mechanisms – No symptoms Prodromal phase – Mild symptoms, increasing numbers Invasive phase – Identifiable disease – Dramatic increase in microbes (may continue to death) Decline phase – Reduction of microbes (immune response and/or treatment) – Declining symptoms Convalescence (recovery)
53
what virulence factors
Traits that collectively give the microbe the ability to cause disease
54
virulence types and what gram
Endotoxins - gram Negative cell wall with lipopolysaccharide (LPS) - Protein exotoxin is synthesized in and secreted by living bacterial cell Exotoxins - predominantly Gram Pos organisms - Cell dies - Cell wall breaks up
55
hemolysins types and look
alpha - dark yellow green beta - yellow glow gamma - light white glitter
56
Biofilms are found throughout nature on... and composed of...
wet surfaces Composed of a complex mixture of microbes, cell debris and extracellular matrix they sticky Resistant to chemical treatment Control of biofilms - Physical removal most effective e.g plaque dental
57
Selective media
Selective media only allow certain bacteria to grow while inhibiting others
58
Differential media
Differential media contain substances that will allow different bacteria to be distinguished from each other