immunology of the gut Flashcards

1
Q

what does a state of “restrained activation” mean in terms of the guts immunology?

A

Surface area of GI tract 200 m2, so it gets a massive antigen load:
Resident microbiota 1014 bacteria
Dietary antigens
Exposure to pathogens

State of “restrained activation”
– Tolerance vs active immune response
– Dual immunological role.

Tolerance:
Food antigens
Commensal bacteria

immunoreactivity:
pathogens

Immune homeostasis of gut & development of healthy immune system requires presence of bacterial microbiota.

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2
Q

what is the gut microbiota?

A

10^14 gut bacteria and 10^13 cells in body - most densely populated “ecosystem” on Earth.
4 major phyla of bacteria (Bacteroidetes, Firmicutes, Actinobacteria, Proteobacteria), also viruses & fungi.
Provide traits we have not had to evolve on our own - Genes in gut flora 100 times our own genome.

the bacterial content increases along the GI tract.
fewest in the stomach, then duodenum, jejunum, ileum, and most in the colon

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3
Q

how is the micriobiota maintained at the normal level?

A
host ingested and secreted nutrients 
->
bacterial growth 
-> 
increased cell numbers
host chemical digestive factors
-> 
bacterial lysis
-> 
decreased cell numbers
peristalsis, contraction and defecation
->
bacterial elimination
->
decreased cell numbers
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4
Q

what is dysbiosis?

A

altered micriobiota composition

like a weighing scale with symbionts on one end and pathobionts on the other (commensals in the middle, they benefit off us be we dont from them)

an increase in the number of pathobionts (that have the potential to cause harm) will lead to inflammation. it may also be driven by the entrance of pathogens

the role of the symbionts (which we live in harmony with) is to regulate this

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5
Q

what are possible causes and disease development of dysbiosis?

A
causes:
diet 
hygiene
infection/inflammation
xenobiotics (drugs or pollutants)
genetics

healthy micriobiota –> dysbiosis

this can then have negative effects on the:
brain (autism, MS)
lung (asthma)
adipose tissue (obesity)
liver (NAFLD)
intestine (IBD, coeliac)
systemic diseases (T1D, rheumatoid arthritis)

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6
Q

what are the main types of defense mechanisms of the mucosa?

A

Physical:
anatomical - Epithelial barrier, Peristalsis
chemical - enyzymes, acidic pH

Commensal bacteria:
occupy “ecological niche”

“Immunological”:
 following invasion
MALT (Mucosa Associated Lymphoid Tissue)
GALT (Gut Associated Lymphoid Tissue)
(this is the final port of call, last resort)
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7
Q

what is the function of the epithelial barrier in defense?

A

Mucus layer - Goblet cells

Epithelial monolayer - Tight junctions

Paneth Cells (small intestine):
Bases of crypts of Lieberkühn.
Secrete antimicrobial peptides (defensins) & lysozyme
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8
Q

what does MALT mean?

A

Mucosa Associated Lymphoid Tissue

Found in the submucosa below the epithelium, as lymphoid mass containing lymphoid follicles
Follicles are surrounded by HEV (high endothelial vessels) postcapillary venules, allowing easy passage of lymphocytes

The oral cavity is rich in immunological tissue. – tonsils and adenoids

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9
Q

what does GALT mean?

A

Gut Associated Lymphoid Tissue

Responsible for both adaptive & innate immune responses
Consists of B & T lymphocytes, macrophages, APC (dendritic cells), and specific epithelial & intra-epithelial lymphocytes

Non-organised:
Intra-epithelial lymphocytes - Make up 1/5th of intestinal epithelium, e.g. T-cells, NK cells
Lamina propria lymphocytes

Organised
Peyer’s patches (small intestine)
Caecal patches (large intestine)
Isolated lymphoid follicles
Mesenteric lymph nodes (encapsulated)
(paneth cells (migrate down from stem cells into the crypt of leiberkhun)?
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10
Q

what are Peyers patches?

A

“immune sensors”

Found in submucosa small intestine – mainly distal ileum
Aggregatedlymphoid follicles covered with follicle associated epithelium (FAE).
FAE - no goblet cells, no secretory IgA, no microvilli

Organised collection of naïve T cells (at sides) & B-cells (in middle)
Development requires exposure to bacterial microbiota
50 in last trimester foetus, 250 by teens
dendritic cells at front

Antigen uptake via M (microfold) cells within FAE
M cells expressIgA receptors, facilitating transfer of IgA-bacteria complexinto the Peyer’s patches.

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11
Q

what is the role of dendritic cells in peyers patches?

A

Antigen Sampling: Trans-epithelial Dendritic Cells

Open tight junctions
Extend dendrites
Directly sample lumen bacteria and bring it back in

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12
Q

what is the adaptive response of B cells in peyers patches?

A
Mature naïve B-cells express IgM in Peyer’s Patches
On antigen presentation class switches to IgA

T-cells & epithelial cells influence B cell maturation via cytokine production
B cells further mature to become IgA secreting plasma cells.
Populate lamina propria

this is the formation of secretory IgA (sIgA):
Up to 90% of gut B-cells secrete IgA

sIgA binds luminal antigen
→ preventing its adhesion and consequent invasion.

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13
Q

what happens to lymph from peyers patches?

A

primary goes to mesenteric lymph nodes

then via the thoracic duct into the systemic circulation

then either back to the gut lumen, or the skin, tonsils and BALT (bronchus associated lymphoid tissue)

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14
Q

what is the turnover of enterocytes and why?

A

Enterocytes & goblet cells of small bowel have a short life span

Enterocytes are first line of defense against GI pathogens & may be directly affected by toxic substances in diet.

Effects of agents which interfere with cell function, metabolic rate etc will be diminished.

Any lesions will be short-lived.

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15
Q

what is the mechanism of cholera infection?

A

Cholera -acute bacterial disease caused by Vibrio cholerae serogroups O1 & O139

Bacteria reaches small intestine → contactwith epithelium & releasescholera enterotoxin.

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16
Q

what are the symptoms and transmission of cholera?

A

Transmitted through faecal-oral route
Spreads via contaminated water & food.

Main symptoms:
Severe dehydration & watery diarrhoea
Other symptoms
Vomiting, nausea & abdominal pain.

17
Q

how is cholera diagnosed and treated?

A

Diagnosis: bacterial culture from stool sample on selective agar is the gold standard, rapid dipstick tests also available.

Treatment: oral-rehydration is the main management ; up to 80% of cases can be successfully treated.

Vaccine: Dukoral, oral, inactivated.
Globally 1.3 - 4 million cases, avg. 95,000 deaths/year (last indigenous UK case 1893: 2017 - 13 cases).

18
Q

what are some causes of infectious diarrhoea?

A

gastroenteritis

Viral:
Rotavirus (children)
Norovirus “winter vomiting bug”

Protozoal parasitic:
Giardia lamblia
Entamoeba histolytica

Bacterial:
Campylobacter jejuni
Escherichia coli
Salmonella
Shigella
Clostridium difficile
19
Q

what are rotaviruses (description, epidemiology, treatment, vaccination)?

A

Description:
RNA virus, replicates in enterocytes.
5 types A – E, type A most common in human infections.

Epidemiology:
Most common cause of diarrhoea in infants & young children worldwide.

Treatment:
Oral rehydration therapy
Still causes ~ 200,000 deaths/year.
Before vaccine, most individuals had an infection by age 5, repeated infections develop immunity.

Vaccination:
Live attenuated oral vaccine (Rotarix) against type A introduced in UK July 2013.

20
Q

what is norovirus?

A

Norovirus (genus) Norwalk virus (species

Description:
RNA virus
Incubation period 24-48 hours

Transmission:
Faecal-oral transmission.
Individuals may shed infectious virus for up to 2 weeks
Outbreaks often occur in closed communities

Symptoms:
Acute gastroenteritis, recovery 1 – 3 days

Treatment:
Not usually required

Diagnosis:
Sample PCR.

Epidemiology:
Estimated 685 million cases per year.

21
Q

what is campylobacter?

A

Campylobacter “curved bacteria”

Most common species:
Campylobacter jejuni, Campylobacter coli

Transmission: 
Undercooked meat (especially poultry), untreated water & unpasteurised milk
Low infective dose, a few bacteria (<500) can cause illness

Treatment:
Not usually required
Azithromycin (macrolide) is standard antibiotic
Resistance to fluoroquinolones is problematic

Epidemiology:
Estimated 280,000 cases per year in UK, 65,000 confirmed
Commonest cause of food poisoning in the UK

22
Q

what is E. Coli?

A

Escherichia coli

Diverse group of Gram-negative intestinal bacteria
Most harmless
6 ”pathotypes” associated with diarrhoea (diarrhoeagenic):

Enterotoxigenic E. coli (ETEC)”
Cholera like toxin
Watery diarrhoea

Enterohaemorrhagic or Shiga toxin-producing E. coli (EHEC/STEC):
E. coli O157 serogroup, Shigatoxin/verotoxin
5-10% get haemolytic uraemic syndrome: loss of kidney function
This one causes most. Problems, causes kidney probs

Enteroinvasive E. coli (EIEC):
Shigella like illness
Bloody diarrhea

Enteropathogenic E. coli (EPEC)
Enteroaggregative E. coli (EAEC)
Diffusely adherent E. coli (DAEC)

23
Q

what is C. Diff?

A

Clostridium difficile bacteria

Management:
Isolate patient (very contagious)
Stop current antibiotics
Metronidazole, Vancomycin
Recurrence rate 15-35% after initial infection, increasingly difficult to treat.
Faecal Microbiota Transplantation (FMT) – 98% cure rate