Immunology Flashcards

1
Q

Antigen

Immunogen

Hapten

A

Antigens: A molecule that can induce an antibody response

Immunogen: A molecule that induces an immune response (typically a protein or a large, multivalent non-protein)

Hapten: An antigen (such as a small chemical) that can bind to antibodies but does not induce an immune response on its own

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2
Q

Immunogenicity

A

Size, repetition (if not a protein, needs repetition), composition (protein, polysacc, etc.)

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3
Q

Comparison of antigens: hapten, polysacc, protein

Binds antibody? Activates B cells? Activates T cells?

A
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4
Q

To generate an immune response to a hapten….

A
  • •Multiple copies of the hapten can be attached to a protein
  • A T cell dependent response can be elicited that will drive production of antibodies specific for the hapten
  • The protein is known as a carrier protein
  • Immune responses to haptens can be pathogenic (contact hypersensitivity)
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5
Q

B cell receptor endocytosis

A
  • When the BCR binds antigen, it is internalized into endosomes
  • Proteins bound by the BCR are degraded to peptides and expressed on MHC class II.
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6
Q

Potential vaccine design for haptens

A
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7
Q

Antibody structure

A
  • •Heavy chain
  • •Mu (IgM), delta (IgD), gamma (IgG), alpha (IgA), or epsilon (IgE) constant region that determines the isotype
    • •Isotype subsets
      • •IgG1, IgG2, IgG3, IgG4
      • •IgA1, IgA2
  • • Light chain
  • •Either a kappa or lambda constant region
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8
Q

Fc portion of antibody

A
  • •Fc is fragment, crystallizable
  • •Mediates many of the effector functions
  • •Contains the constant region
  • •Many phagocytes have receptors that bind the Fc portion of antibodies
  • •Greatly enhances phagocytosis (opsonization)
  • •The complement binding region (IgM and IgG) is on the Fc portion of the antibody
  • This region only becomes accessible when antigen is bound
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9
Q

Fab portion of antibody

A
  • •Fab is fragment, antigen-binding
  • •Contains the variable regions and the complementarity-determining regions (CDRs)
  • •Each B cell makes an antibody with a unique variable region that binds to one antigen (or closely related antigens)
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10
Q

Isotypes

Allotypes

Idiotypes

A
  • •Isotypes (classes) are defined by differences in amino acid sequences in the constant regions
    • •IgM and IgE are different isotypes
  • •Allotypes are defined by differences between individuals due to genetic polymorphisms
    • •Emilio’s IgM and Jane’s IgM are allotypes (same isotype with very minor variations)
  • •Idiotypes are defined by the specific amino acids in the hypervariable region
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11
Q

IgM

A
  • •Mu heavy chain
  • •Effectively fixes complement
  • •Expressed on the surface as the B cell receptor
  • •First antibody produces in an antibody response (primary response)
  • •Found as a pentamer to increase avidity (connected by J chains)
  • •Does NOT cross the placenta
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12
Q

IgD

A
  • •Delta heavy chain
  • •Expressed on naïve B cell surface
  • •There is only trace amounts of IgD in the serum
  • •Function is not well understood
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13
Q

IgG

A
  • •Gamma heavy chain
  • •Most effective antibody class in many infections
    • •Opsonizes bacteria
    • •Many phagocytes express Fc receptors for IgG
    • •Fixes complement
    • •Neutralizes bacterial toxins and viruses
    • •Most abundant in secondary response
  • •Crosses the placenta
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14
Q

IgE

A
  • •Epsilon heavy chain
  • •Antibody dependent cellular cytotoxicity (ADCC)
    • •Binds to extracellular parasites
    • •Mediates killing by eosinophils (which have receptors for the IgE Fc)
  • •Crosslinks IgE Fc receptors on mast cells
    • •Release of histamine (allergy and anaphylaxis)
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15
Q

IgA

A
  • •Alpha heavy chain
  • •Mucosal immunity
    • •Prevents attachment of bacteria and virus to mucosal membranes
  • •Does NOT fix complement
  • •Passively transferred in breast milk to infants
  • •Monomeric in serum or dimeric at mucosa (connected/stabilized by J chains)
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16
Q

Affinity & Avidity

A
  • •Affinity refers to the strength of an individual antibody binding to antigen
  • •If the antibodies are multivalent (i.e. the pentameric form of IgM) then the overall strength of the multiple antibodies binding to multiple antigenic sites is the avidity of the interaction
  • •Multimeric forms of antibodies serve to increase the avidity of the antibody-antigen interaction
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17
Q

Opsonization

A
  • •IgG enhances opsonization of encapsulated bacteria through
    • •Complement activation (formation of C3b)
    • •Direct binding by IgG Fc receptors on phagocytes
  • •IgM enhances opsonization through
    • •Complement activation
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18
Q

Antibody isotype (class) switching

A
  • •In the T cell dependent immune response IgM, IgG, IgA, and IgE can be produced.
  • •In response to cytokines produced by the T cells and binding of CD40 to CD40L
    • •The B cell undergoes gene rearrangement that gives rise to a different isotype of antibody
    • Activation-induced cytidine deaminase (AID) is induced and mediates isotype switchin
  • •The class of antibody produced is dependent upon the cytokine produced by the CD4+ T helper cells
    • •Interleukin-4 – IgG and IgE
    • •Interleukin-5 – IgA
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19
Q

Hyper IgM syndrome

A
  • •Hyper IgM syndrome occurs when there is a mutation in the gene encoding CD40L on CD4+ helper T cells
  • •The B cells cannot effectively class switch and the patients have very high levels of IgM with little IgG, IgA, and IgE
  • •The B cell and T cell numbers are normal
  • •Decreased/absent germinal centers
  • •Patients have severe, recurrent pyogenic bacterial infections
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20
Q

T cell dependent (TD) immune response

A
  • •Surface IgM BCR recognizes a protein antigen
  • •B cells express peptides on MHC class II
  • •The T cell-B cell interaction of CD40/CD40L leads to germinal center formation, class switching, and somatic hypermutation
  • •Antibodies produced are of high affinity
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21
Q

T cell independent (TI) immune response

A
  • •B cells recognize a non-protein antigen (e.g. polysaccharide cell wall) which can crosslink surface IgM and activate the B cell
  • •TI antigens often have repeated identical antigenic epitopes that causes cross-linking of the BCR complex
  • •This can lead to production of secreted IgM (sometimes IgG and IgA) which is specific for the antigen

TI antigen response:

  • •Complement (through CD21) and TLR are involved in B cell activation
  • •Affinity is generally lower in antibodies derived from a TI immune response
  • •Splenic B cells (marginal zone B cells) and mucosal B cells (B1 B cells) are involved in the TI antigen response
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22
Q

T cell dependent vs. independent chart with antigens

A
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23
Q

Natural Antibodies

A
  • •Some antibodies (predominantly IgM) are present prior to exposure
  • •Referred to as “natural antibodies”
  • •T cell-independent B cell response to environmental antigens
  • •Some degree of cross-reactivity between similar antigens
  • The most clinically significant natural antibodies arise against the ABO glycoproteins on patient’s with red blood cells lacking the A or B antigen.
  • •Antibodies are present without prior exposure to foreign (non-self) red blood cells
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24
Q

Humoral Immunity

A
  • •Antibodies produced by plasma cells circulate as soluble proteins in the blood to provide protection
  • •Some of the protection is mediated by the antibody alone and other mechanisms of protection require involvement by other cell types
  • •Exotoxin-mediated diseases
    • •Tetanus and diphtheria
  • •Infections with polysaccharide capsules
    • •Pneumococci, meningococci, Haemophilus influenza
  • •Some viral infections
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25
Q

Effector functions of antibodies

A
  • •Neutralizing toxins
  • •Block entry of pathogens into cells and across mucosa
  • Activating the complement cascade (IgG and IgM) through the classical pathway
  • •Opsonizing a pathogen or antigen and enhance phagocytosis by other cells (IgG)
  • •Antibody-dependent cytotoxicity (ADCC)
    • •Fc receptors expressed on the phagocytic and cytotoxic cells recognize the Fc fragments of the different isotypes
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26
Q

IgE-mediated immunity against helminths

A
  • •IgE binds to helminths
  • •Eosinophils bind to the IgE Fc via FcεRI
  • •Binding IgE leads to release of eosinophil mediators to destroy the helminth
  • •TH2 CD4+ T cells release IL-5 that enhances eosinophil activity
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27
Q

Antibody response to T-cell Independent antigen

A
  • •Naïve B cells (Marginal zone B cells or mucosal B cells) recognize antigen through the IgM BCR
  • Co-stimulation occurs through complement receptors (e.g. CD21) and/or TLRs
  • •Antigen-specific B cells differentiate to short-lived plasma cells and produce predominantly IgM
    • •Limited isotype switch can occur (IgG, IgA)
    • •No effective affinity maturation
    • •Limited memory
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28
Q

Early B cell activation

A
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29
Q

Antibody response to T-cell dependent antigen

A

Naïve B cells (outside of the germinal centers)

  • •Recognize antigen through the IgM BCR
  • •Internalize the antigen on the IgM
  • •Degrade antigen to peptides to present on MHC class II
  • •Express CD40 and B7 (CD80/86)
  • •Can receive additional signals from complement, TLR, CD4+ T cells, and/or cytokines
  • •After binding antigen and activation, B cells migrate towards B cell-T cell zone border (secondary lymphoid tissue)

Antigen-activated B cells (B cell-T cell zone border outside germinal center)

  • •Interact with antigen-activated CD4+ T helper cells
  • •Differentiate to short-lived plasma cells (plasmablasts)
    • •Produce and secrete IgM antibody
    • •Antibody is relatively low affinity for antigen

Antigen-activated B cells (inside the germinal centers)

  • •Further interact with antigen-specific activated CD4+ T helper cells (particularly through CD40:CD40L)
  • •Rapidly proliferate
  • •Undergo isotype switching and somatic hypermutation
    • •Supported by IL-4 and IL-5 (TH2 CD4+ T helper cells)
  • •Interact with follicular dendritic cells and antigen-presenting cells to select for high affinity antibody
  • •Late germinal center:
    • •B cells with high affinity antibodies differentiate into memory B cells or plasma cells
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30
Q

Primary antibody response

A

5-10 days

  • •The primary antibody response takes about 5-10 days
  • •First antibody produced is IgM
  • •The earliest IgM produced is specific for antigen, but relatively low affinity
  • •After a few days, germinal centers form
    • •B cells undergo isotype switching and somatic hypermutation

In the late primary antibody response

  • •The high affinity B cells in the germinal center differentiate to plasma cells and memory B cells
  • •Antibodies of other isotypes are produced (e.g. IgG)
  • •Affinity maturation has occurred
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31
Q

Genetic mechanism of isotype switch

A
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32
Q

Secondary antibody response

A

1-3 days

  • •The secondary antibody response arises from memory B cells and T cells.
  • •It occurs much more rapidly (develops in 1-3 days)
  • •Leads to a more robust class-switched (IgG) antibody response
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33
Q

Increased affinity maturation on repeated exposure

A
  • •Successive exposure to a T cell dependent antigen leads to increased affinity of the B cell receptor/antibody
  • •After repeat antigen exposure
    • •Antigen-specific memory B cells interact with the antigen-specific T cells in the germinal center
    • •Somatic mutations and selection lead to increasingly more specific antibodies
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34
Q

Feedback inhibition of humoral immunity

A
  • •Antigen-antibody complexes can have harmful effects
    • •Activate complement through classical pathway
  • •IgG production leads to feedback inhibition
    • •FcγRIIB on the surface of B cells
    • •Binds the Fc portion of IgG
    • •Signals through an immunomodulatory tyrosine-based inhibition motif (ITIM)
    • •Terminates the B cell response to antigen
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35
Q

Peripheral blood antibodies

A
  • •IgG >> IgA > IgM > IgD, IgE
  • •Evaluation of altered serum antibody levels can help identify immunodeficiency
  • •IgD not typically measured
  • •IgE requires different techniques
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36
Q

X-linked agammaglobulinemia

A
  • •Deficiency in Bruton’s tyrosine kinase (required for B cell development)
  • •No circulating antibodies, absence of secondary lymphoid tissues
  • •Life-threatening infections
    • •Encapsulated bacteria
    • •Enterovirus
    • •Vaccine associated poliomyelitis
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37
Q

IgA deficiency

A
  • •Most common immunodeficiency
  • •Frequently asymptomatic
  • •Increased risk for mucosal infections
    • •Particularly viral infections
  • •Autoimmune association
  • •Blood transfusion risk (antibodies against IgA)
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38
Q

Activation-induced cytidine deaminase (AID)

A

mediates recombination

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39
Q

Common variable immunodeficiency (CVID

A
  • •Multiple etiologies and numerous underlying mutations
  • •Underlying defect in B cells or helper T cells
  • •Overall low immunoglobulins
    • •Low IgG, low IgA, and low or normal IgM
  • •Decreased memory B cells
  • •Increased risk for bacterial, enteroviral and Giardia lamblia infections in late childhood and adulthood
  • •Autoimmune association and increased risk for lymphoma
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40
Q

Humoral immunity to virus:

A

viral peptides presented on MHC class II

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41
Q

Severe Combined Immunodeficiency

A
  • •Impaired or absent adaptive immune response
    • -No or very limited B cells and T cells +/- NK cells
    • -Intact innate immunity
  • •Severe, life-threatening infections
  • •Different mutations with different disease phenotypes
    • -Adenosine deaminase deficiency, RAG gene mutation, common gamma chain (X-linked)
  • •Stem cell transplant is the current therapy
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42
Q

B cells

A
  • CD19+ CD20+
  • -Major component of adaptive immunity (humoral immunity)
  • -~20% of circulating lymphocytes
  • -Express antibody (immunoglobulin) on the cell surface
  • -Differentiate into plasma cells and memory cells
  • -Antigen-presenting cells
  • Originate and mature in BM (and fetal liver)
    • Antigen NOT required for early B cell development
    • Million produced daily
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43
Q

Plasma cells

A
  • •Plasma cells (CD38+, CD138+) are responsible for producing antibodies
  • •Antibodies are critical for immunity
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44
Q

Steps in B cell development

A
  • •B cells originate and mature in the bone marrow
  • •Antigen is not required for B cell maturation
  • •The maturation steps are from lymphoid progenitor to pro-B cell to pre-B cell (μ heavy chains) to immature B cell (IgM BCR) to naïve B cell (IgM and IgD).
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45
Q

B cell receptor / Diversity

A

is surface IgM or IgD

Diversity:

  • •Each B cell has a BCR specific for one antigen
  • •~10 million specificities of BCRs
  • •VDJ recombinase (RAG1 and RAG2 genes)
    • -V, D, and J segments for heavy chain
    • -V and J segments for light chain
  • •RAG1/2 also involved in TCR gene rearrangement
  • •RAG1/2 gene mutations can give rise to SCID
  • •The B cell receptor (BCR) is an antibody (IgM and IgD in naïve B cells) that has a transmembrane domain and is associated with Igα (CD79a) and Igβ (CD79b)
  • •BCR diversity occurs through combinatorial and junctional diversity
  • •The variable regions of the heavy chains are formed from VDJ genes and the variable regions of the light chains are formed from VJ genes
  • •Successful gene rearrangement and production of IgM is essential for B cell development
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46
Q

Junctional diversity of Antibodies

A
  • •Nucleotides are added and removed during recombination
  • •Occurs at the joining ends of the gene segments
  • •Significantly increases diversity of the VDJ and VJ regions
  • •These regions are known as “hypervariable regions”
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47
Q

Isotype of the antibody

A
  • •The isotype of the antibody is determined by the constant region of the heavy chain
  • •The constant region genes join to the variable region genes
  • •IgM is produced first
  • •Successful gene rearrangement and protein production leads to B cell development
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48
Q

Clonal deletion

Receptor Editing

A

B cells/ Central tolerance

  • -Removal of immature B cells with expression of IgM that is reactive to self
    • If the IgM binds to self antigen the cell can die by apoptosis or undergo receptor editing

Receptor Editing: occurs if the BCR binds to self antigen

  • -RAG genes are re-expressed
  • -the V-J recombination is repeated to express the second type of light chain
  • -the new light chain and original heavy chain can generate a specificity that does not recognize self
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49
Q
A
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50
Q

B cell anergy

A

•B cell anergy (peripheral tolerance)

  • -Some self-reactive B cell escape deletion in the bone marrow
  • -When it encounters self-antigen in the absence of co-stimulation, the cells becomes anergic (do not respond)
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51
Q

Allelic exclusion

A
  • •A single B cell expresses protein from only one light chain gene and one heavy chain gene at a time
  • •Although alleles from both parents are present, one set of genes is silenced
  • •This silencing is known as allelic exclusion

•Each mature B cell/plasma cell only expresses kappa or lambda light chains​

  • heavy chain variable region is identical in naive B ells with both IgM and IgD
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52
Q

Antigen recognition and B cell activation

A
  • •The antibody variable region of the BCR recognizes and binds a specific antigen
  • •Binding leads to receptor cross-linking in association with Igα/Igβ (CD79a/CD79b) and phosphorylation of ITAMs (Immunoreceptor tyrosine-based activation motifs)
  • •ITAM phosphorylation triggers downstream signaling pathways
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53
Q

B cell second signal (CD21) or (CD40)

A

—————– CD21————-

  • •CD21 (CR2) is a complement receptor expressed with CD19 on the B cell surface
  • •CD21 interacts with the C3d complement component bound to antigen (alternative complement pathway)
  • •Enhances B cell activation ~1000 fold
  • •This can serve as a second signal

—————– CD40————-

  • •After binding of antigen, the B cell upregulates co-stimulatory molecules (B7 and CD40)
  • •The BCR then takes up the antigen and expresses protein antigens on the MHC class II protein
54
Q

B cells and lymph nodes

A
  • •In the germinal center of the lymphoid tissues, antigen activated B cells:
    • -Rapidly divide
    • -Interact with antigen-specific T cells, APCs, and follicular dendritic cells
    • -Undergo isotype switching, somatic hypermutation, and affinity maturation
  • •The B cells are antigen-selected in the germinal center
  • •Antigen-specific B cells interact with antigen-specific CD4+T cells, antigen-presenting cells, and follicular dendritic cells
  • •The B cells mutate the antibody genes to improve binding to antigen
55
Q

B cell isotype switching

A
  • •In response to certain cytokines in the setting of CD40 binding by CD40L
    • -B cells switch the heavy chain constant region from the IgM constant region to a downstream isotype (IgG, IgA, or IgE)
    • -the antigen specificity (VDJ) is not altered by isotype switching
  • •Different antibody isotypes are specialized for different protective responses
  • •Class switching requires deleting the intervening heavy chain DNA
  • •B cells cannot revert back to expressing IgM antibodies after isotype switching has occurred
56
Q

Follicular dendritic cells

A
  • •Follicular dendritic cells (FDCs) capture complement/antigen complexes on the cell surface
  • •FDCs present antigen complexes to B cells and allow selection for B cells with higher affinity/avidity antibodies
57
Q

Affinity maturation

A
  • •After T cell co-stimulation, the B cells undergo somatic hypermutation in the germinal center
  • •The antibody variable regions are subject to random point mutations (activation-induced cytidine deaminase (AID))
  • •Some of the mutations give rise to higher affinity/avidity antibodies which are selected for by the FDCs and T cell interactions
  • •The process of selection for increased affinity/avidity is affinity maturation
58
Q

•In the germinal center, B cells that are highly specific for antigen differentiate into…

A

•In the germinal center, B cells that are highly specific for antigen differentiate into

  • antibody-producing plasma cells
  • long-lived memory B cells
59
Q

CD19

A
  • Expressed on B cell surface and a component of the BCR complex.
60
Q

CD79a, CD79b

A

•B cell receptor associated proteins (Igα/Igβ) involved in signal transduction after antigen cross-linking, leads to the phosphorylation of ITAMs to trigger downstream signaling pathways.

61
Q

CD20

A

•Another protein expressed on the B cell surface (targeted by rituximab)

62
Q

CD21

A

•Complement receptor (CR2) which binds to complement component C3d in association with antigen to dramatically enhance B cell response (also the receptor for Epstein Barr Virus).

63
Q

CD40

A

•Co-stimulatory molecule expressed on B cell surface which binds to CD40L on helper T cells to provide second signal to B cells. Critical for class switching, affinity maturation, and differentiation.

64
Q

CD138,CD38

A

•Proteins expressed on plasma cell surface.

65
Q

Hypersensitivity

A
  • Hypersensitivity refers to an exaggerated or inappropriate immune response to external (non-self) antigen or self antigen
  • The exaggerated immune response causes harm to the host

4 types main Igs

  • I: IgE
  • II: IgG IgM
  • III: IgG IgM
  • IV: cell mediated
66
Q

Mechanisms of reaction to self-antigens include:

A
  1. •A foreign molecule cross-links or modifies a host cell to generate “new” epitopes or antigens in the host cell that then become recognized as foreign
    • -Contact sensitivity occurs to “neoantigens” formed from chemicals binding self-proteins and activating a T cell immune response
  2. •Cross-reactivity or an antibody of T cell receptor specific for a foreign antigen that has some capacity to bind to self-antigens (molecular mimicry)
    • -Rheumatic fever occurs when antibodies against streptococci react with cardiac myosin due to antigenic similarity
  3. Sensitization to antigen:
  • •In most types of hypersensitivity, the immune system has “seen” the antigen (or a closely related antigen) before
  • •The primary antigen exposure gives rise to an immune response with production of antibodies and/or memory T cells
  • •The hypersensitivity response typically occurs on a subsequent exposure
67
Q

Sensitization to antigen process

A
  • •In most types of hypersensitivity, the immune system has “seen” the antigen (or a closely related antigen) before
  • •The primary antigen exposure gives rise to an immune response with production of antibodies and/or memory T cells
  • •The hypersensitivity response typically occurs on a subsequent exposure
68
Q

Mast cells in Hypersensitivity

A
  • •Express receptors for Fc portion of IgE (important in anaphylaxis)
  • •Release histamine and other cytokines

Histamine is preformed in granules and has immediate effects

  • •Vasodilation
  • •Increased vascular permeability
  • •Smooth muscle contraction
  • •Itching
  • •Kinins and kininogenase

Additional preformed mediatiors:

  • Serotonin
  • TNF
  • Proteases
  • Numerous other molecules

Some that must be produced and have delayed effects:

  • •Arachidonic acid metabolites
    • -Leukotrienes: delayed but similar to histamines
    • -Prostaglandins
  • •Cytokines
  • •Chemokines
69
Q

Type I hypersensitivity (Immediate/anaphylactic)

A

Antibody mediated: Very fast, develops in minutes

  • •Cells and antibodies involved
    • -Mast cells and basophils
    • -Preformed IgE (Prior B cell response driven by TH2 helper T cells)
  • •Mechanism
    • -First exposure sensitization to form IgE antibodies
    • -Subsequent exposure: IgE binds antigen and crosslinks mast cell Fc receptors
    • -Mast cells release preformed mediators and produce additional mediators
  • Examples: Anaphylaxis, allergic rhinitis, hives
70
Q

Type II hypersensitivity (cytotoxic/antibody-mediated)

A

Minutes to hours, Antibody mediated

  • •Cells and antibodies involved
    • -CD8 + cytotoxic T cells, NK cells, and/or neutrophils
    • -Preformed IgG/IgM (produced by B cells, driven by TH2 CD4+ helper T cells or naturally-occurring)
  • •Mechanism
    • -Preformed IgG or IgM antibody binds to fixed cell surface or extracellular matrix antigens.
    • -Binding leads to complement activation and opsonization/phagocytosis and/or antibody-dependent cell-mediated cytotoxicity (ADCC) by NK or CD8+ cytotoxic T cells.
  • Examples: Some drug allergies, incompatible blood transfusions, Goodpasture’s syndrome (antibody against basement membrane)

FIgure: ADCC, Complement

71
Q

Type III hypersensitivity (Immune complex-mediated)

A

Hours to days, antibody mediated

  • •Cells and antibodies involved
    • -Antigen and antibody complex (typically IgG)
    • -Neutrophils
  • •Mechanism
    • -When antigen is abundant, soluble immune complexes (antigen bound to antibody) form and deposit in tissues (particularly in vessels)
    • -Immune complex deposition can activate complement and lead to inflammation (chemotaxis of neutrophils, vessel leakage, and vessel damage)
  • Examples
    • •Serum sickness (e.g. drugs)
    • •Systemic lupus erythematosus
    • •Arthus reaction: -Local injection of antigen that reacts with preformed IgG
72
Q

Type IV hypersensitivity (Delayed-type hypersensitivity)

A

Days to weeks to months

  • •Cells involved
    • -Antigen-presenting cells, TH1 CD4+ helper T cells, and sometimes CD8+ cytotoxic T cells
  • •Mechanism
    • -Antigen-presenting cells prime T cells to respond to antigen and drive a TH1 CD4+ helper T cell response
    • -On subsequent response to the antigen, the previously primed T cells (memory cells) proliferate rapidly and activate a macrophage response and cytokine release
  • Examples: granuloma formation in TB chronic infection, contact dermatitis (posions ivy), GVHD,
    • •In M. tuberculosis and PPD (purified protein derivative) testing, the T cells recognize the microbial peptides.
    • •In contact dermatitis (e.g. poison ivy), the T cells recognize chemically modified self proteins.
73
Q

M. tuberculosis and purified protein derivative test

A

Classic delayed type hypersensitivity reaction

  • •The PPD assay is used to evaluate for a cell-mediated immune response to M. tuberculosis suggestive of infection or prior vaccination.
  • •Protein derivatives from M. tuberculosis are injected intradermally.
  • TH1 CD4+ T helper cells specific to the M. tuberculosis antigens produce cytokines that lead to an increase in the permeability of local blood vessels, the recruitment of T cells and macrophages, and local tissue destruction.
  • •Produces swelling/induration of the skin ~48 hours after injection.
74
Q

Cytotoxic T cells

A
  • •CD8+ T cells (cytotoxic) mediate direct cellular killing
    • •Perforins and granzymes are present in the granules and released
      • •Perforins are inserted into the cell membrane and form a channel
      • •Granzymes are proteases that degrade proteins in the cell membrane
  • •Activate caspases (leading to apoptosis)
  • •FasL is expressed on the cytotoxic T cells that binds to Fas
  • •Fas and FasL interact and the target cells dies by apoptosis
75
Q

Major cellular components of cell-mediated immunity

A
  1. •Antigen-presenting cells (macrophages and dendritic cells)
  2. •CD4+ helper T cells (TH1 subset)
  3. •CD8+ cytotoxic T cells
  4. •NK cells
  5. •B cells also play a contributory role
    • •Antibody-dependent cellular cytotoxicity (ADCC)
76
Q

Activation of effector T cells

A
  • Naïve T cells encounter antigen in the secondary lymphoid organs
    • •Antigen receptor engagement as well as co-stimulatory signals are required for activation
    • •Typically dendritic cells are the antigen-presenting cells
  • •Effector T cells can encounter antigen in other tissues
    • •Antigen receptor engagement but not co-stimulatory signals are required for activation
77
Q

Immune response to intracellular bacteria

A
  • •Antigen-presenting cells ingest organisms
  • •Recognition of PAMPs by the pattern recognition receptors (e.g. TLRs) stimulates cytokine production (IL-12) and expression of co-stimulatory molecules
  • •Pathogen peptides are expressed on MHC class II to CD4+ T helper cells which differentiate to TH1 cells
78
Q

IFNgamma

A

Activates CD8+ and APCs

  • •The TH1 CD4+ T cells secrete IFNγ which
    • •Activates the APCs to kill the phagocytosed pathogens
    • •Activates the CD8+ cytotoxic T cells to become effector cells
  • •The CD8+ T cells recognize peptides presented by any nucleated cell and can kill the cells
79
Q
A
80
Q

Chemokines

A
  • •APCs are primarily located under the epithelial surfaces and T cells are in the lymphoid tissues
  • •When APCs ingest a microbe, they upregulate chemokine receptors (CCR7) for the chemokines produced by the T cells
  • •The chemokine gradient produced by the T cells attracts the APCs through the lymphatics to the lymphoid tissue to interact with the T cells and B cells
81
Q

Antigen transmit to secondary lymphoid organs

A
82
Q

Viral immunity

A
  • •CD8+ cytotoxic T cells
  • •NK cells
  • •B cell activation and antibodies also play a role
    • •Antibodies
      • •Neutralize the virus
      • •Increase phagocytosis
      • •Activate complement
      • •Mediate antibody-dependent cell cytotoxicity (ADCC)
  • •In cell-mediated immunity against viruses the CD8+ cytotoxic T cells recognize viral peptides presented on the MHC class I proteins of all nucleated cells
  • •The cytotoxic T cells can directly kill viral-infected cells
  • •CD8+ cytotoxic T cells can cause tissue injury even if the virus itself is not pathogenic
    • •Immunopathogenesis
83
Q

Viral Immune evasion

A
  • •Humoral immunity plays a primary role in protection against some viruses and CD8+ cytotoxic T cells play a primary role in others
  • •Viruses can evade antibody immunity by producing variable antigens (influenza, rhinovirus, HIV)
  • •Viruses can evade CD8+ cytotoxic T cell immunity by downregulating expression of MHC class I in infected cells
84
Q

NK cells in viral immunity

A
  • •NK cells (innate immunity) and interferons are also involved early in the anti-viral immune response
  • •NK cells identify infected cells through lack of MHC class I or via ADCC (IgG)
  • •NK cells produce cytotoxic proteins (granzyme and perforin) that release and kill the target cell
  • NK cells express inhibitory receptors
85
Q

Viral latency

A
  • •Persistence of viral nucleic acid in the cell
  • •Active viral particles are not produced
  • •Intact cell-mediated immunity is important in maintaining viral latency
    • -If the virus begans producing proteins, memory T cells will recognize the proteins and kill the cell
    • -Cells with latent virus will survive
86
Q

Peptide presentation in MHC class I

A
  • •Endogenously synthesized proteins (intracellular proteins) are cleaved by a proteasome to peptide fragments that associate with a TAP (transporter associated with antigen processing) transporter
  • •The TAP transporter transports the fragment to the endoplasmic reticulum (ER)
  • •Peptide fragments in the ER associate with the MHC class I molecules
87
Q

Peptide presentation in MHC class II

A
  • •Extracellular proteins are engulfed by phagocytosis or endocytosis into phagosomes or endosomes respectively
  • •The phagosome or endosome will fuse with lysosomes which contain proteases that can degrade the polypeptides into short peptide fragments
  • •The peptide fragments are able to associate with the MHC class II molecules in specialized endosomal intracellular vesicles
  • MHC class II proteins are prevented from binding to endogenous peptides by binding of a protein called the invariant chain (Ii) in the ER
  • •The placement of an extracellularly derived peptide in the MHC class II molecule requires protease removal in specialized endosomal intracellular vesicles
88
Q

Invariant chain

A
89
Q

The role of MHC-associated antigen presentation in the recognition of microbes by CD4+ and CD8+ T cells

A
90
Q

Mycobacterial immune evasion

A
  • •Mycobacterial organisms survive within a phagosome by preventing fusion with the lysosome and acidification
    • •Infection is controlled by a cell-mediated immune response but not always eradicated
  • •Mycolic acid and lipids
    • •Essential for survival in host
    • •May alter the host immune response
91
Q

Mycobacterium tuberculosis and granuloma formation

A
  • •A pathologic immune response can occur to intracellular pathogens that persist
  • •The classic example of cell-mediated immunity that can lead to persistent inflammation is the granulomatous response to M. tuberculosis
  • •The chronic antigenic stimulation of the organism drives CD4+ TH1 T cell responses (production of IL-2 and IFNγ)
  • •IFNγ drives macrophages to secrete IL-12 and the cycle of activation continues
  • •The macrophages secrete hydrolytic enzymes and form granulomas which often have central necrosis
  • • These pathways lead to tissue damage, but can keep the organism dormant

delayed type hypersnseitiy and granuloma formation

92
Q

M. tuberculosis and PPD (purified protein derivative)

A

Classic delayedtype hypersensitivty reaction

  • •The PPD assay is used to evaluate for a cell-mediated immune response to M. tuberculosis suggestive of infection or prior vaccination (BCG).
  • •Protein derivatives from M. tuberculosis are injected intradermally.
  • •TH1 CD4+ T helper cells specific to the M. tuberculosis antigens produce cytokines that lead to an increase in the permeability of local blood vessels, the recruitment of T cells and macrophages, and local tissue destruction.
  • •Produces swelling/induration of the skin ~48 hours after injection.
93
Q

Viruses that can lead to reactivation of M. tuberculosis infection

A

Measles

Cytomegalovirus

94
Q

Th1 vs Th2 immune response in leprae

A
  • •Mycobacterium leprae
    • •Cause of leprosy
  • •Tuberculoid leprosy
    • •TH1 driven, intense cell-mediated response
    • •Few bacteria, non-caseating granulomas
  • •Lepromatous leprosy
    • •TH2 driven response, no cellular immune response
    • •Many bacteria
95
Q

Deficiencies in cell-mediated immunity

A
  • •Numerous bacteria (particularly intracellular bacteria (e.g. mycobacterium)), viruses (e.g. CMV, HHV8), and fungi (e.g. Candida)
  • •In addition, deficiencies in cell-mediated immunity significantly increase the risk of neoplasia, particularly with viral-driven tumors
96
Q

Opportunistic pathogens

A
  • •Pathogens that rarely cause disease in an immunocompetent individual
  • •Patients with decreased cell-mediated immunity are susceptible to infections with opportunistic pathogens
  • •HIV/AIDS, immunosuppression (such as in transplant), inherited T cell deficiencies (e.g. SCID, DiGeorge syndrome)
97
Q

Human immunodeficiency virus (HIV)/acquired immunodeficiency syndrome (AIDS)

A
  • Active HIV infection leads to decreased CD4+ T cells
  • The loss of CD4+ T cells leads to decreased cell-mediated immunity
98
Q

Organ rejection

A
  • •Organ rejection (acute and chronic) is driven predominantly by cell-mediated immunity
  • •CD8+ cytotoxic T cells mediate the direct damage to the organ, CD4+ T cells play a role
  • Non-self MHC proteins are the major protein targets of the immune response in organ rejection
99
Q

IL2

A
  • •T cells are the main mediators of cell-mediated immunity and secrete and are activated by IL-2. IL-2 is critical in amplifying the cell-mediated immune response.
  • •When T cells are activated they:
    • -upregulate expression of interleukin-2 (IL-2), the T cell growth factor
    • -upregulate expression of IL-2R
  • •The autocrine effect of IL-2 binding to the IL-2 receptor allows clonal growth and proliferation of the antigen-specific activated T cells.
100
Q

IL-12 – IFNγ loop:

A

IL-12 produced by APCs drives the differentiation of CD4+ TH1 helper cells that in turn produce IFNγ. IFNγ activates CD8+ cytotoxic T cells and NK cells, and the APCs. This loop is essential in effective cell-mediated immunity, particularly in controlling mycobacterial infections.

101
Q

T cells

A

Adaptive immunity

  • -CD3+
  • -CD4+ helper and CD8+ cytotoxic
  • -Originate in bone marrow
  • -Mature in the thymus
  • -Cell-mediated immunity
  • -T cell receptor recognizes protein antigens
102
Q

T cell receptor

A

T cell receptor (TCR)

  • -Antigen specific surface receptors
  • -αβ heterodimer in complex with CD3 and other molecules
  • -Small subset express γδ heterodimer (innate immunity)
  • •Antigen binding to the receptor signals through immunoreceptor tyrosine-based activating motifs (ITAMs)
  • •The TCR only recognizes peptide in the context of an MHC protein
103
Q

MHC

A
  • Proteins responsible for presenting peptides of proteins on the cell surface to T cells
  • Antigen presentation occurs when peptide fragments associate with MHC molecules expressed on antigen-presenting cells
  • CD4 and CD8 are co-receptors necessary for the TCR to recognize and bind the peptides bound to the MHC molecules
104
Q

CD4 and CD8 with MHC

A
105
Q

MHC restirction

A
  • •T cells are selected for their ability to bind weakly to self-MHC molecules
  • •T cells that bind MHC weakly survive
  • •T cells only recognize peptide bound to a self-MHC molecule
  • •Key factor in self vs. non-self discrimination and transplant tolerance
    • -MHC are the major proteins recognized as foreign in transplant rejection
106
Q

cortex medulla of thymus and t cell maturation scheme

A

Cortex: double negative thymocyte selection

  • •Early T cell precursors are called thymocytes
  • •When the T cell precursor transits from the bone marrow to the thymus it is negative for surface CD3, CD4, and CD8 surface molecules
  • -Surface CD3 expression is increased as the thymocytes develop
  • •The first stage is in the thymic cortex
  • •The first stage is the CD4-CD8- (double negative) stage which does not express a TCR

Double positive thymocyte in the cortex

  • •RAG genes are expressed, and produces a TCR with unique antigen specificity
  • •The next stage is the double positive (CD4+CD8+) stage
    • -Surface CD3 is expressed with the TCR.
  • •Cortical epithelial cells express MHC class I and II molecules
  • •When the TCR with CD4 or CD8 binds weakly to self-MHC molecules, that cell will survive

Single positive thymocyte in the medulla: negative selection

  • •Cortical epithelial cells express MHC class I and II molecules
  • •The autoimmune regulator (AIRE) transcription factor synthesizes self proteins to be expressed in the MHC molecules
  • •Strong binding of the TCR to self-antigen/MHC molecules: Cell death or becomes regulatory T cell
  • •Weak/no binding of the TCR to self-antigen/MHC molecule: Survive and go to periphery
107
Q

TCR gene rearrangement

A
  • •RAG1/RAG2 gene expression
    • -VDJ gene rearrangement on the beta chain
    • -VJ gene rearrangement on the alpha chain
108
Q

Thymic selection of T cells (Central tolerance) summary

A
  • •Positive selection: An inclusive type of selection which checks all thymocytes for the ability to recognize peptides on self-MHC
  • •Negative selection: An exclusive type of selection which eliminates potentially autoreactive T cells
    • -Positively selected thymocytes migrate into medullary region of thymus
    • -Those which react with high affinity to self-peptides/MHC complexes (peptides produce by the activity of AIRE) will undergo apoptosis or potentially become regulatory T cells
    • -Those that react with a lower affinity are allowed to survive and leave the thymus as mature T cells
109
Q

DiGeorge syndrome immune complications

A

Thymic aplasia due to a developmental defect in the third and fourth pharyngeal pouches

Marked deficiency in T cells. Infants with DiGeorge’s syndrome develop severe viral, fungal, and protozoal infections and some patients also have pyogenic infections

Patients also have hypocalcemia due to lack of parathyroid glands

110
Q

RAG deficiency

A
  • •Patients with mutations that eliminate the expression of RAG1 or RAG2 genes have severe combined immunodeficiency (SCID)
  • •No B cells or T cells, but normal NK cells
    • -The genes are required for VDJ recombination and successful development of both B cells and T cells
  • •Mutations that cause lower than normal RAG expression can cause Ommen Syndrome
    • -Autoimmune manifestations and immunodeficiency
111
Q

T cell periopheral tolerance

A
  • •T cells that leave the thymus and react with antigen in the absence of co-stimulation will become anergic (non-responsive)
  • •Anergy is antigen-specific
  • •Clonal deletion occurs through apoptosis when T cells repeatedly encounter high levels of self-antigen in the periphery
  • •Regulatory T cells (Tregs) also participate in suppressing self-reactive T cells
  • •T cells originate in the bone marrow and mature in the thymus; thymocyte maturation goes from CD4-CD8- to CD4+CD8+ to single CD4 or CD8 positive.
  • Only T cells that weakly bind to self-MHC proteins survive and subsequently bind to foreign antigen expressed by self-MHC proteins (MHC restriction)
112
Q

TH1 CD4+ T cells

A
  • -Secrete IFNγ which promotes and activates macrophages to more effectively kill intracellular oganisms
  • -Secretes IL-2 which promotes T cells
  • -Driven by IL-12 and IFNγ
113
Q

TH2 CD4+ T cells

A
  • -Secrete IL-4, IL-5, and IL-13
    • •Promote IgE, IgG, and IgA class-switching and differentiation in B cells
  • -Secrete IL-10 which is anti-inflammatory.
  • -Driven by IL-2 and IL-4.
114
Q

TH17 CD4+ T cells

A
  • -Produce IL-17 to promote neutrophilic inflammation
    • •Response to extracellular pathogens
  • -TH17 cells enhance mucosal immunity
115
Q

3 CD4+ T cell subtypes summary

A
116
Q

Hyper-IgE syndrome (Job’s syndrome)

A
  • •Deficiency of TH17 cells (from STAT3 mutation)
  • •Impaired recruitment of neutrophils to sites of infection and increased levels of IgE
  • •The clinical manifestations are staphylococcal abscesses without inflammation and eczema
117
Q

Tregs

A
  • -T cells that inhibit the effector function of CD4+ helper T cells and CD8+ cytotoxic T cells
  • -Typically CD4+CD25+ and express FoxP3
  • -Express CTLA-4 which inhibits T cell B7:CD28 co-stimulation
  • -Secrete anti-inflammatory cytokines (IL-10 and TGFβ)
118
Q

Cytotoxic T cells

A
  • •CD8+ T cells (cytotoxic) mediate direct cellular killing.
  • -Perforins are inserted into the cell membrane and form a channel
  • -Granzymes are proteases that degrade proteins in the cell membrane
  • -Activate caspases (leading to apoptosis)
  • -FasL is expressed on the cytotoxic T cells that binds to Fas
    • •Fas and FasL interact and the target cells dies by apoptosis.
119
Q

2 signal t cell activation (general)

A

FIRST SIGNAL

  • •Antigen recognition in the context of the MHC by the TCR
  • •After binding of the antigen by the TCR, ITAMs are phosphorylated
  • •ITAM phosphorylation recruits and activates ZAP70 tyrosine kinase which triggers a cascade of signaling
    • -increased expression of cytokines, cytokine receptors, and cell proliferation genes.
  • •The longer the antigen is bound, the more the ITAMs are phosphorylated.

SECOND SIGNAL

  • •Binding of activating co-stimulatory molecules or cytokines
    • -CD28 is the usual co-stimulatory receptor
    • -Cytokines binding to cytokine receptors on the T cells can also provide the second signal
120
Q

2 signal activation of CD8+ T cells

A

CD8+ cytotoxic T cells

  • 1st signal: The TCR and co-receptor CD8 recognize and bind the peptide in MHC class I
  • 2nd signal: Cytokines (particularly interleukin-2 (IL-2)) secreted from CD4+ cells or co-stimulatory molecule engagement
121
Q
A
122
Q

CD28

A
  • •CD28 expressed on the T cells which binds to B7 (CD80/CD86)on the antigen-presenting cells
    • -2nd signal is received after antigen binding, the T cell is activated
    • -2nd signal is not received, the T cell becomes anergic
123
Q

CTLA4 PD1

A

T cell inhibitory molecules

  • Inhibitory molecules expressed on the surface of T cells help to control and down-regulate the immune response
  • CTLA-4 and PD1 are upregulated about 48-96 hours after the initial T cell activation.
  • Binding of CTLA-4 by B7
  • blocks binding of B7 to CD28
  • inhibits IL2 synthesis
  • PD1 is expressed on T cells
  • When it interacts with its receptor PDL1 on APCs (macrophages and dendritic cells), the immune response is inhibited
  • Target for immunotherapy in cancer treatment

-Some cancer cells express PDL1

124
Q

T cell superantigens (immune evasion)

A
  • •Certain toxin proteins (e.g staphylococcal enterotoxins and toxic shock syndrome toxins) directly bind the T cell receptor and the MHC class II protein without internal processing
  • •Binding activates multiple T cells at once (regardless of TCR antigen specificity)
    • -Uncontrolled release of cytokines from both the T cell and the APC (IL-2, IL-1, and TNF)
    • -The cytokine release can contribute to illness and death
125
Q

Memory T cells

A
  • •Antigen-specific T cells that have gone through a first primary immune response to antigen
  • •Live for years
  • •Subsequent recognition of antigen
    • -activation with a lower level of co-stimulation
    • -rapid and more robust production of cytokines
  • •Numerous subsets of memory T cells
126
Q

IL4

A

•Promotes B cell growth and class switching to IgE and IgG and promotes differentiation of TH2 CD4+ T cells and inhibits differentiation of TH1 CD4+ T cells.

127
Q

IL5

A

•Differentiation/activation of eosinophils, class switching to IgA

128
Q

IL10

A

•Turns off immune response (anti-inflammatory)

129
Q

IL13

A

Activation of eosinophils

130
Q

IL17

A

Promotes neutrophilic inflammation

131
Q

IFNgamma

A

Stimulates phagocytosis by macrophages, increases expression of MHC class I and II, promotes TH1 and inhibits TH2 CD4+ T cell response