Immunology Flashcards
What is SCID
Severe combined immunodeficiency
Describe pathogen vs host
Bacteria and viruses replicate very quickly so they evolve
Exertion of selection pressure resistant bacteria
Individuals who are resistant to bacteria will survive and reproduce
Polymorphic genes control immunoresponse
Describe recognition strategy 1
Recognising molecular patterns
Hundreds of receptors
Germ-line encoded
Uses PRRs
What are PRRS
Pattern recognition receptors Includes PAMP (Pathogen associated molecular patterns) and DAMP (Damage associated molecular patterns)
What are the advantages and disadvantages of recognition strategy 1
Many cells express the same receptor so it’s rapid and effective
Limited diversity and some pathogens will not be recognised
Describe recognition strategy 2
Recognising precise structures
Millions of receptors
Generated by random recombination of gene segments (must be activated first)
Give the advantages and disadvantages of recognition strategy 2
Massive diversity so all structures potentially recognised
Fewer cells have this so it takes a long time
Random nature can lead to autoimmunity
What is the epitome
The site on the antigen where antibodies bind to
Compare innate immunity to adaptive immunity
Independent of previous exposure vs adaptation to previous exposure
Depends on pre-formed and rapidly synthesised components vs depends on clonal selection
Fast vs slow
Limited specificity vs very specific
Give some features of innate immunity
Destroys nucleic acids in the cytoplasm
Activates inflammatory pathways
Type 1 interferon
Give some features of adaptive immunity
Memory cell formation
Priming required
Cellular or humoral (lymphocytes)
How does innate immunity relate to adaptive immunity
Buys time for adaptive immunity and promotes and directs the correct reponse
What percentage of WBCs do lymphocytes make up in blood and lymph
20-60%
99%
Which cells and substances are involved with innate response
Neutrophils Macrophages Eosinophils Complement Acute phase - P
Which cells and substances are involved with adaptive immunity
T cells
B cells
Antibodies
Which cells and substances are involved with adaptive AND innate immunity
Basophils
Dendritic
Natural Killer
Cytokines
Describe clonal selection
Polyclonal naive lymphocyte, activation, proliferation, effector lymphocyte
Genetic recombination generates diversity of immunoglobulin and TCR
What are primary lymphoid organs and give examples
Organs where lymphocytes are produced (lymphopoiesis) e.g. bone marrow and thymus
What are secondary lymphoid organs and give examples
Organs where lymphocytes interact with antigens and other lymphocytes e.g. spleen, lymph nodes, mucosal-associated lymphoid tissue
Describe/ draw the structure of the thymus
Between the right and left lung in front of the heart. Thyroid lies above the C cartilage. Bi-lobed
Give some features of the thymus
Bi-lobed
Proliferating lymphocytes
Cortex and medulla
How does the thymus change during infection
No obvious change
Where are Hassal’s corpuscle and what do they do
Fibroblast cells for T-reg development in the thymus
How does age effect the thymus
As one ages, there is a decreased output of NEW T cells
Give some features of bone marrow
B cell and RBC production
Foetus = lots of marrow
Adult = lot so fat with large and flat bones
How does the bone marrow change during infection
Increased WBC production
Describe the lymphatic system
Drainage system that collects antigens and filters them through nodes. Antigens are likely to enter the lymph.
What structures can be found in the lymph nodes
High endothelial venues (HEV) = cells move from the blood to the lymph node
Germinal centres = where B cells proliferate
How does the lymph node change during infection
Lymph nodes enlargen
Where are B and T cells found in the lymph nodes
B cells = outside
T cells = inside
Due to chemokines
What does the spleen do
Filters for antigens in the blood
What is red and white pulp and where is it found
Found in the spleen
red= RBCs
White = WBCs
How does the spleen change during infection
larger follicles
Give 2 features of the spleen
Not many HEV
Contains germinal centres
How does epithelium act as a defence
physical barrier with a very large SA
Mucosae-associated lymphoid tissue (MALT)
Villi have lymph drains
What are Peyer’s patches and where are they found
Found in the gut with large aggregates of B cells and germinal centres
What are microfold cells and where are they found
M cells that sample antigens in the gut in the peyer’s patches
How does the cutaneous tissue contribute to immune response
Epidermal langerhans cells captures pathogens from the skin. Also intraepidermal lymphocytes, T cells, dermal dendritic cells and macrophages
What is the purpose of recirculation
Ensures that the antigen meets the lymphocyte with the specific receptor
Where does recirculation occur
Between the blood and peripheral lymphoid tissue
What does extravasation mean
Movement from blood to lymph node
Describe the process of extravasation
Naive T cell rolls along the epithelium
proteins and carbs bound to epithelium
Receptors on the lymphocyte bind to chemokine on the epithelium
Lymphocytes signals the T cells
Change in structure of integrin
Integrin becomes high affinity binding and stops movement
Transport of the T cell through the epithelium
What are CD markers
CD = cluster differentiation
Systemic nomenclature for cell surface membranes
What CD markers to all T cells show
CD3
How to T cells differ from B cells in recognising antigens
T cells recognise PROCESSED antigens using the TCR while B cells can recognised unprocessed antigens
Which CD markers do B cells show
CD19 and CD20
Which MHC class do B cells show
MHC II
Describe APCs
Antigen presenting cells that present processed antigen to T cells in adaptive response. Includes dendritic cells, macrophages and B lymphocytes
How does skin act as a barrier
Acidic environment
Give physiological features on innate immunity
body temperature
Acidic pH
Chemical mediators e.g. complement, lysozyme, interferons
Give features of neutrophils
phagocytose
40-75% of lymphocytes
Short lived
First cells recruited
How do neutrophils move into the lymph
rolling Infection releases chemokine Signal from endothelium Forms a high affinity neutrophil Diapedesis through
Define opsonisation
Micro-organism is coated with proteins for phagocytsosis
What are NETs
Neutrophil extracellular traps where granules and chromatin are released to form extracellular fibres
Give the features of eosinophils
Phagocytosis and granule release
Defence against parasites
Help in GALT (IgA)
Give the features of basophils
release of granules
May act as APCs
Give the features of monocytes
Phagocytosis, cytokine release, APC
When they leave the blood they become macrophages
Give the features of mast cells
Granule release, histamine and leukotrienes, phagocytosis
Mucosal or connective tissue
Complement production (anaphylatoxins)
vasodilation and increased vascular permeability
Give the features of dendritic cells
APCs and cytokine secretion
Give the features pf natural killer cells
Infected cell lysis
Large granulated lymphocytes (cytotoxic)
Secretes interferon gamma
Binds to opsonised cells
What are soluble mediators
small secreted proteins important in cell-cell communication that are generally local acting and short-lived
What are the types of soluble mediators
Interleukins (between leukocytes) Interferons (anti-viral) Chemokines (chemotaxis) Growth factors Cytotoxic
What is complement
A complex series of proteins and glycoproteins that triggers enzyme cascade systems . Role in complementing activity of specific antibodies.
Where is complement produced
Liver produces inactivated precursors
How is complement activated
Cleaving the end
What are the three complement activation pathways
Classical - antibodies
Lectin - lectin proteins that bind to carbs
Alternative - bacterial surfaces directly activates
What is a common stage of the three complement pathways
Activation of Cab and the Membrane attack complex (MAC)
What can immunoglobulins do water binding
Complement activation
Opsonisation
Cell activation via Fc
Draw/describe the structure of an immunoglobulin
Fab at the top and Fc at the bottom
2 heavy chains and 2 light chains linked by disulphide bonds
Hinge region at the middle corner
What are hyper variable regions
there are 3 on immunoglobulins 1,2,3 and 3 complement determining regions (CDR)
What is the immunoglobulin superfamily
They have a similar domain to the antibody
What forces are involved in binding
Hydrogen bonds
Ionic bonds
Hydrophobic interactions
Van der Waals
Define antibody affinity
strength of the total non covalent interactions between single antigen binding site and single epitope
Define antibody avidity
The overall strength of multiple interactions between antibody with multiple binding sites and complex antigen with multiple epitopes
Define antibody-cross reactivity
Antibody elicited in response to an antigen can recognise antigens of a different structure e.g. vaccination for cowpox effective for smallpox, common intestinal bacteria and carbs on RBC
What separates the different immunoglobulin classes
Different heavy chains, same light chains
Give the features of IgG
Most abundant
Actively transported across the placenta
Classical complement
Gamma heavy
Give the features of IgA
second most abundant
Dimer
Mucosal surface protection
Alpha heavy
Give the features of IgM
First Ig at the site Pentamer Multiple binding sites agglutination and complement Micro heavy
Give the features of IgE
Allergic reactions parasitic infecitons Binds to mast cells for histamine release Very low levels E heavy
Give the features of IgD
Very low levels
Expressed in B cell development and activation
Delta heavy
Which immunoglobulins are found in the blood
IgG and IgM
What is the purpose of Ig gene rearrangement in the bone marrow
undergo selection to destroy self targets
What enzyme is used in Ig gene rearrangement
VDJ recombinase
Where is MHC I found and what can it indicate
Found on all nucleated cells, indicating health via protein presentation
Where is MHC II found
APC cells - dendritic, macrophage, B lymphocytes
Describe the process of B cell activation
Dendritic cell and B lymphocytes endocytose the antigen (attaches to BCR) which is then processed and presented using MHC II
T cell recognises the antigen on the dendritic cell using TCR
T cell finds the B lymphocyte presenting the same antigen and activates it
CD28 production provides signalling and cytokines produced
Lymphokine is secreted
What does class switching involve
IgM and IgD are "weak" When signals (lymphokines) are given from T helper there is a class switch
Where does affinity maturation occur
Germinal centres
Describe the process of affinity maturation
AID enzyme deliberately causes mutation in antibody coding genes of B cells (somatic hypermutation)
Cells can become worse -> apoptosis
Cells can become better -> stronger antibody -> plasma or memory cell
Explain clonal selection
From a large population, 1 cell is activated via antigen binding to BCR which leads to proliferation (clonal selection). Division and differentiation is clonal expansion
What are the advantages and disadvantages of B cells
Major vaccine targets
Monoclonal antibody use
Negative role in autoimmune conditions, involved in allergies and cancers
Describe the T cell independent activation pathway
A repetitive bacterial polysaccharide acts as the first signal
Microbial constituent or accessory cell provides second signal e.g. LPS
What causes differences in Ig for T cell independent and dependent
No lymphokines released in T cell independent
Describe the TCR
The Fab region of an antibody, top is variable, bottom is constant. One alpha and one beta and a cytoplasmic tail.
What is the difference between the alpha and beta TCR
alpha = V and D and 1 recombination Beta = V, D and J and 2 recombinations
What are CD4 and CD8 and where are they found
Co-receptors that bind to MHC. CD4 is found one T helper cells while CD8 is found on T cytotoxic cells
Give the structural differences between MHC I and MHC II
MHC I - 1 cytoplasmic tail, asymmetrical, (gap at the corner)
MHC II - 2 cytoplasmic tails, symmetrical (gap at top)
What is HLA
Human leukocyte antigen - genes found in all vertebrates that code for MHC. polygenic
Where is HLA found
Chromosome 6
What type of expression is HLA
Co-dominant
Relationship between HLA and MHC
MHC class I = A,B,C MHC class II = DP, DQ, DR
What is haplotype
Group og MHC alleles on 1 chromosome
Describe the endogenous MHC pathway
MHC I. Synthesised in the cytoplasm
- TAP transports protein to RER
- calnexin and calreticulin and tapasin fold and stabilise the MHC
- molecules transport to the golgi
Describe the exogenous MHC pathway
MHC II. Antigens from external environment
- invariant chain stabilised the MHC complex
- transport to the golgi
- invariant chain is digested to leave a CLIP
- Antigen is endocytose and broken down
- Peptide presented on MHC
- MHC exocytosed
Why may antibodies be inefficient
Pathogens: Can hide within cells Can change antigen shape Can coat the antigen with antibodies Can produce fake antigens
What are T cells defined by
inputs (STAT) and outputs (cytokines)
How do Tc cells induce apoptosis
Granule release - Perforin, granzyme, granulising
Fas ligand - binds to Fas
What is Th1 involved in
Macrophage activation
Delayed type hypersensitivity
B cell activation
Describe delayed type hypersensitivity
Recruits monocytes
Activates monocytes and macrophages and keeps them at infection site
What occurs when the macrophage cannot kill the pathogen e.g. tuberculosis
Cytokine release, endothelial cells express proteins monocyte and Th1 migration Th1 activates monocyte and macrophage
What is the process of Th1 amplification
Activated Th1 binds to MHC II and CD40 on the B cell
Secretion of IFN gamma
Upregulation of MHC II, CD40 and tumour necrosis factor alpha
Increase in TNF alpha secretion (autocrine)
Give features of Tfh
Activation by dendritic cells
Stimulates B cells
What is the role of Th2
Targets eosinophils
Trigger in tracheal epithelia
Travels from dendritic to naive
What Cluster differentiation is expressed by naive memory T cells
CXC45RA
What CD is expressed on central memory cells
CCR7
What are immune checkpoints
Expressed on T cells after a large number of exposures (co-stimulatory receptors) causes a longer time for response
What is the function of Treg
Regulation of T cells and tolerant of self-antigens
What is the function of Th17
Interleukin 17, bacterial control and neutrophil recruitment
Describe the process of T cell development
Produced in the bone marrow (CD4-CD8-TCR-)
IN the cortex = CD4+CD8+TCR+
In the medulla = CD4+CD8-TCR+ vice versa
Describe selection in the thymus of T cells
Thymocyte can’t bind = apoptosis
Weak binding = survival (+ve selection)
Strong binding = apoptosis (-ve election)
what is the largest burden of disease
Acute lung disease
What is the purpose of Interferon type 1
Activation of NK
What is the purpose of interferon type 2
Produced by T cells pre-inflamamtion
Define cytokine storm
Over production of cytokines and accumulation of cells
Compare bacterial and viral defence
Complement and antibody opsonisation vs Interferons and inflammatory mediators + acute phase proteins
Phagocytes vs NK cells
What are the features of an eradicable disease
Simple and cheap to diagnose Genetically stable pathogen Accessible host species Eliminated persistent infection Safe and effective vaccine
What are the features of the ideal vaccine
Completely safe easy to administer cheap stable]active against all variants life-long protection
Define tolerance
Specific unresponsiveness to an antigen that is induced by exposure of lymphocytes to that antigen
Give examples of autoimmune disease
Hashimoto’s, myasthenia gravis
Define pathogenesis
Susceptibility genes and environmental triggers
Describe hypercytokinaemia
Too much immune response
positive feedback loop
pathogens enter the wrong compartment (Sepsis)
What is the 3 signal model
Licensing response
Antigen recognition
Co-stimulation
Cytokine release
What is AIRE
AutoImmune Regulator
A specialised transcription factor that allows expression of genes
What is the function of IL-10
Pleitropic
Blocks pro-inflammatory cytokine synthesis
Downregulates macrophages