Immunology Flashcards
Lymph node
A secondary lymphoid organ that has many afferents, 1 or more efferents. Encapsulated, with trabeculae. Functions are nonspecific filtration by macrophages, storage of B and T cells, and immune response activation.
Follicles of lymph nodes
Site of B-cell localization and proliferation. In outer cortex. Primary follicles are dense and dormant. Secondary follicles have pale central germinal centers and are active.
Medulla of lymph nodes
Consists of medullary cords (closely packed lymphocytes and plasma cells) and medullary sinuseses. Medullary sinuses communicate with efferent lymphatics and contain reticular cells and macrophages.
Paracortex of lymph nodes
Houses T cells. Region of cortex between follicles and medulla. Contains high endothelial venules through which T and B cells enter from blood. Not well developed in patients with DiGeorge syndrome. Paracortex enlarges in an extreme cellular immune response (eg viral infection).
Lymph drainage of head and neck
cervical lymph node
Lymph drainage of lungs
hilar lymph node
Lymph drainage of trachea and esophagus
mediastinal lymph nodes
Lymph drainage of upper limb, breast, skin above umbilicus
Axillary lymph nodes
Lymph drainage of liver, stomach, spleen, pancreas, and upper duodenum
celiac lymph nodes
Lymph drainage of lower duodenum, jejunum, ileum, colon to splenic flexure
superior mesenteric lymph nodes
Lymph drainage of colon from splenic flexure to upper rectum
inferior mesenteric lymph nodes
Lymph drainage of lower rectum to anal canal (above pectinate line), bladder, vagina (middle third), prostate
internal iliac lymph nodes
Lymph drainage of testes, ovaries, kidneys, uterus
para-aortic lymph nodes
Lymph drainage of anal canal (below pectinate line), skin below umbilicus (except popliteal territory), scrotum
superficial inguinal lymph nodes
Lymph drainage of dorsolateral foot and posterior calf
popliteal lymph nodes
right lymphatic duct
drains right side of body above the diaphragm
thoracic duct
drains everything but the right side of body above the diaphragm
Sinusoids of spleen
Long, vascular channels in red pulp with fenestrated “barrel hoop” basement membrane. T cells are found in the periarteriolar lymphatic sheath (PALS) within the white pulp of the spleen. B cells are found in follicles within the white pulp of the spleen. The marginal zone, in between the red pulp and white pulp, contains APCs and specialized B cells, and is where APCs capture blood-borne antigens for recognition by lymphocytes. Red pulp is found peripherally, and the white pulp is found centrally. Macrophages found nearby in spleen remove encapsulated bacteria.
Splenic dysfunction (eg postsplenectomy, sickle cell disease)
a decrease in IgM leads to a decrease in complement activation causing a decrease in C3b opsonization and creating an increase susceptibility to encapsulated organisms. Common infections include (SHiNE SKiS): Streptococcus pneumoniae, Haemophilus influenzae type b, Neisseria meningitidis, Escherichia coli, Salmonella spp., Klebsiella pneumoniae, Group B Streptococci.
Postsplenectomy histology
Howell-Jolly bodies (nuclear remnants), target cells, thrombocytosis (loss of sequestration and removal), and lymphocytosis (loss of sequestration).
Thymus
Site of T cell differentiation and maturation. Encapsulated. THymus is derived from the THird pharyngeal pouch. Lymphocytes of mesenchymal origin. Cortex is dense with immature T cells; medulla is pale with mature T cells and Hassall corpuscles containing epithelial reticular cells. T cells= Thymus. B cells=Bone marrow
Innate immunity
Made up of neutrophils, macrophages, monocytes, dendritic cells, natural killer cells (lymphoid origin), complement. It is germline encoded. Resistance to the innate immunity through generations; does not change within an organism’s lifetime. Response to pathogen is non-specific and occurs rapidly (minutes to hours). Physical barriers apart of the innate immunity includes epithelial tight junctions and mucus. Secreted proteins include lysozyme, complement, c-reactive protein (CRP), defensins. Key features in pathogen recognition includes toll-like receptors (TLRs), which are patteren recognition receptors that recognize pathogen-associate molecular patterns (PAMPs). Examples of PAMPs include LPS (gram-negative bacteria), flagellin (bacteria), ssRNA (viruses).
Adaptive immunity
Made up of T cells, B cells, and circulating antibodies. It has variation through V(D)J recombination with lymphocyte development. Microbial resistance is not inheritable. Response to pathogens is highly specific and is refined over time. It develops over long periods but memory response is faster and more robust. Immunoglobulins are secreted. Memory cells include activated B and T cells; subsequent exposure to a previously encountered antigen leads to a stronger and quicker immune response.
MHC I and II
MHC encoded by HLA genes. Present antigen fragments to T cells and bind T-cell receptors (TCRs).
MHC I
Loci include HLA-A, HLA-B, HLA-C. Binds TCR and CD8. It is expressed on all nucleated cells, but are not expressed on RBC’s. They present endogenously synthesized antigens (eg viral or cytosolic proteins) to CD8+ cytotoxic T cells. Antigen peptides are loaded onto MHC I in RER after delivery via TAP (transporter associated with antigen processing). A component of MHC class I molecules is beta2-microglobulin.
MHC II
Loci include HLA-DR, HLA-DP, HLA-DQ. Binds to TCR and CD4. They are expressed on APCs. They present exogenously synthesized antigens (eg bacterial proteins) to CD4+ helper T cells. Antigens are loaded following release of invariant chain in an acidified endosome. A polypeptide involved in the formation and transport of MHC class II protein is invariant chain.
HLA-A3
Associated with hemochromatosis.
HLA-B27
Associated with Psoriatic arthritis, Ankylosing spondylitis, arthritis of Inflammatory bowel disease, Reactive arthritis (formerly Reiter syndrome). (PAIR). Also known as seronegative arthropathies.
HLA-DQ2/DQ8
Associated with celiac disease
HLA-DR3
associated with diabetes mellitus type 1, SLE, Graves disease, Hashimoto thyroiditis.
HLA-DR2
Multiple sclerosis, hay fever, SLE, Goodpasture syndrome
HLA-DR4
Rheumatoid arthritis, diabetes mellitus type 1. There are 4 walls to a “rheum”
HLA-DR5
Associated with pernicious anemia, which leads to vitamin B12 deficiency and Hashiomoto thyroiditis.
Natural killer cells
Use perforin and granzymes to induce apoptosis of virally infected cells and tumor cells. They are lymphocyte members of innate immunity. Their activity is inhanced by IL-2, IL-12, IL-alpha, and IL-beta. They are induced to kill when exposed to a nonspecific activation signal on target cell and/or to an absence of class I MHC on target cell surface. Also kills via antibody-dependent cell-mediated cytotoxicity (CD16 binds Fc region of bound Ig, activating the NK cell).
B-cell functions
They recognize antigens and undergo somatic hypermutation to optimize antigen specificity. They also produce antibodies and differentiate into plasma cells to secrete specific immunoglobulins. They also maintain immunologic memory. Memory B cells persist and accelerate future response to antigen.
T-cell functions
CD4+ T cells help B cells make antibodies and produce cytokines to recruit phagocytes and activate other leukocytes. CD8+ T cells directly kill virus-infected cells. Delayed cell-mediated hypersensitivity (type IV). Acute and chronic cellular organ rejection. Rule of 8: MHC II X CD4=8; MHC 1 X CD8=8.
Differentiation to Th1 cell from helper T cells
requires IL-12
Differentiation to Th2 cell from helper T cells
requires IL-4
Differentiation to Th17 cell from helper T cells
TGF-beta and IL-6
Th1 cell
A helper T cell. Secrete IFN-gamma. Activates macrophages and cytotoxic T cells. They are activated by INF-gamma and IL-12. They inhibited by IL-4 and IL-10 (from Th2 cells). Macrophages release IL-12, which stimulates T cells to differentiate into Th1 cells. Th1 cells release IFN-gamma to stimulate macrophages. Helper T cells have CD4, which binds to MHC II on APCs.
Th2 cell
Secretes IL-4, IL-5, IL-10, and IL-13. They recruit eosinophil for parasite defense and promotes IgE production by B cells. They are activated by IL-4. They are inhibited by IFN-gamma (from Th1 cell).
Cytotoxic T cells
They kill virus-infected, neoplastic, and donor graft cells by inducing apoptosis. They release cytotoxic granules containing preformed proteins (eg perforin, granzyme B). Cytotoxic T cells have CD8, which binds to MHC I on virus-infected cells.
Regulatory T cells
They help maintain specific immune tolerance by suppressing CD4 and CD8 T cell effector functions. They are identifiable by expression of CD3, CD4, CD25, and FOXP3. Activated by regulatory T cells produce anti-inflammatory cytokines (eg IL-10, TGF-beta).
T and B cell activation
Antigen-presenting cells (APCs) include B cells, macrophages, and dendritic cells. Two singals are required for T-cell activation, B-cell activation, and class switching.
Steps for naive T-cell activation
- Dendritic cell (specialized APC) samples and processes antigen. 2. Dendritic cell migrates to the draining lymph node. 3. Foreign antigen is presented on MHC II and recognized by TCR on Th (CD4+) cell. Antigen is presented on MHC I to Tc (CD8+) cell. 4. “Costimulatory signal” is given by interaction of B7 and CD28 (signal 2). 5. Th cell activates and produces cytokines. Tc cell activates and is able to recognize and kill virus-infected cell.
Steps B-cell activation and class switching
- Th-cell activation as above. 2. B-cell receptor- mediated endocytosis; foreign antigen is presented on MHC II and recognized by TCR on Th cell (signal 1). 3. CD40 ligand (CD40L) on Th cell (signal 2). 4. Th cell secretes cytokines that determine Ig class switching B cell. B cell activates and undergoes class switching, affinity maturation, and antibody production.
Antibody structure and function
Fab (variable) region consisting of light (L) and heavy (H) chains recognizes antigens. Fc region of IgM and IgG fixes complement. Heavy chain contributes to Fc and Fab regions. Light chain contributes only to Fab region.
Fab region of antibodies
Fragment that does the Antigen Binding. Determines idiotype creating a unique antigen-binding pocket; only 1 antigenic specificity expressed per B cell.
Fc region of antibodies
This region is constant, with carboxy terminal. It also binds complement. Also has carbohydrate side chains. It determines isotype (IgM, IgD, ect).
Generation of the diverse region in antibodies
Random recombination of VJ (light-chain) or V(D)J (heavy chain) genes. Random combination of heavy chains with light chains. Somatic hypermutation (following antigens stimulation). Addition of nucleotides to DNA during recombination by terminal deoxynucleotidyl transferase.
Immunoglobulin isotypes
Mature B cells express IgM and IgD on their surfaces. They may differentiate in germinal centers of lymph nodes by isotype switching (gene rearrangement; mediated by cytokines and CD40L) into plasma cells that secrete IgA, IgE, or IgG.
IgG
Main antibody in secondary (delayed) response to an antigen. Most abundant isotype in serum. Fixes complement, crosses the placental (provides infants with passive immunity), opsonizes bacteria, neutralizes bacterial toxins and viruses
IgA
Prevents attachment of bacteria and viruses to mucous membranes; does not fix complement. Monomer in circulation or dimer when secreted. Crosses epithelial cells by transcytosis. Produced in GI tract (eg by Peyer patches) and protects against gut infections (eg Giardia). Most produced antibody overall, but has a lower serum concentration. Released into secretions (tears, saliva, mucus) and breast milk. Picks up secretory component from epithelial cells before secretion.
IgM
Produced in the primary (immediate)response to an antigen. Fixes complement but does not cross the placenta. It also acts as the antigen receptor on the surface of B cells. They are monomers on B cell and pentamers when secreted. The pentamer structure allows for avid binding to an antigen while the humoral response evolves.
IgD
It has unclear function. It is found on the surface of many B cells and in the serum.
IgE
It binds to mast cells and basophils; it cross-links when exposed to allergen (two IgE binding the same allergen), thereby mediating immediate (type I) hypersensitivity through release of inflammatory mediators such as histamine. Mediates immunity to worms by activating eosinophils. It has the lowest concentration in serum.
Opsonization by antibody
Antibody promotes phagocytosis
Neutralization by antibody
Antibody prevents bacterial adherence
Complement activation by antibody
Activates membrane attack complex (MAC) and C3b, enhancing opsonization and lysis. Complement binding region is the CH2 region of the Fc.
Differentiation of T cells
T cells precursors are made in the bone marrow and than move to the thymus (at this point they express CD4+, CD8+, and T-cell receptor, which binds MHC I or MHC II) where they undergo positive and negative selection. By the time the T cell reaches the thymic medulla, it is differentiated. They then travel to the lymph node to wait for activation. Cytotoxic T cells kill virus-infected, neoplastic, and donor graft cells. Helper T cells will further differentiate once activated (eg Th1, Th2, Th17).
Positive selection of T cells
Occurs the in the thymic cortex. T cells expressing TCRs (T-cell receptors) are capable of binding surface self MHC molecules survive.
Negative selection of T cells
Occurs in the medulla of the thymus. T cells expressing TCRs with high affinity for self antigens undergo apoptosis.
Thymus independent antigens
Antigens lack a peptide component (eg lipopolysaccharides from gram negative bacteria). They cannot be presented by MHC to T cells. They are weakly or non-immunogenic. Vaccines often require boosters and adjuvants (eg pneumococcal polysaccharide vaccine).
Thymus dependent antigens
Antigens containing a protein component (eg diphtheria vaccine). Class switching and immunologic memory occur as a result of direct contact of B cells with Th cells (CD40-CD40L interaction).
Acute phase reactants
Factors whose serum concentrations change significantly in response to inflammation; produced by the liver in both acute and chronic inflammatory states. It is notably induced by IL-6. Up regulated proteins include CRP, ferritin, fibrinogen, hepcidin, and serum amyloid A. Down regulated proteins include albumin and transferrin.
C-reactive protein
Up regulated during acute phase reactants. It is an opsonin; it also fixes complement and facilitates phagocytosis. It is measured clinically as a sign of ongoing inflammation.
Ferritin
Up regulated during acute phase reactants. It binds and sequesters iron to inhibit microbial iron scavenging.
Fibrinogen
Up regulated during acute phase reactants. It is an coagulation factor, promotes endothelial repair, and correlates with ESR.
Hepcidin
Up regulated during acute phase reactants. It prevents release of iron bound by ferritin, which is the cause of anemia of chronic disease.
Serum amyloid A
Up regulated during acute phase reactants. Prolonged elevation can lead to amyloidosis.
Albumin
Down regulated during acute phase reactants. Reduced concentration conserves amino acids for positive reactants.
Transferrin
Down regulated during acute phase reactants. It is internalized by macrophages to sequester iron.
Complement system
System of hepatically synthesized plasma proteins that play a role in innate immunity and inflammation. Membrane attack complex (MAC) defends against gram-negative bacteria.
Classic complement pathway
It is IgG or IgM mediated. (GM makes classic cars)
Alternative complement pathway
It is activated by microbe surface molecules.
Lectin pathways
It is activated by mannose or other sugars on microbes surface.
C3b
responsible for opsonization (b binds bacteria)
C3a
responsible for anaphylaxis
C4a
responsible for anaphylaxis
C5a
responsible for anaphylaxis and neutrophil chemotaxis.
C5b-9
It is responsible for attracting MAC leading to cytolysis.
Opsonins
C3b and IgG are the two primary opsonins in bacterial defense and enhances phagocytosis. C3b also helps clear immune complexes. Opsonin=to prepare for eating.
Inhibitors of complement system
Decay accelerating factor (DAF, aka CD55) and C1 esterase inhibitor help prevent complement activation on self cells (eg red blood cells).
C1 esterase inhibitor deficiency
Causes hereditary angioedema. Ace inhibitors are contraindicated.
C3 deficiency
Increases risk of severe, recurrent pyogenic sinus and respiratory tract infections; there is an increase susceptibility to type III hypersensitivity reactions.
C5-C9 deficiencies
Terminal complement deficiency increases susceptibility to recurrent Neisseria bacteremia.
DAF (GPI-anchored enzyme) deficiency
Causes complement- mediated lysis of RBCs and paroxysmal nocturnal hemoglobinuria.
Important cytokines
Hot T-bone stEAK: IL-1: fever (hot), IL-2: stimulates T cells, IL-3: stimulates bone marrow, IL-4: stimulates IgE production, IL-5: stimulates IgA, IL-6 stimulates aKute-phase protein production.
IL-1
Secreted by macrophages. Also called osteoclast-activating factor. It causes fever, acute inflammation. It activates endothelium to express adhesion molecules. Induces chemokine secretion to recruit WBCs.
IL-2
It is secreted by all T cells. It stimulates the growth of helper, cytotoxic, and regulatory T cells, and NK cells.
IL-3
It is secreted by all T cells. It stimulates growth and differentiation of bone marrow stem cells. It functions like GM-CSF.
IL-4
It is secreted from Th2 cells. It induces differentiation into Th2 cells. It promotes the growth of B cells and stimulates IgE and IgG production
IL-5
It is secreted from Th2 cells. It promotes the growth of B cells and stimulates IgA production. It also stimulates growth and differentiation of eosinophils.
IL-6
Secreted by macrophages. It causes fever and stimulates production of acute phase proteins
IL-8
Secreted by macrophages. It is major chemotactic factor for neutrophils
IL-12
Secreted by macrophages. It induces differentiation of T cells into Th1 cells and activates NK cells.
TNF-alpha
Secreted by macrophages. It mediates septic shock. It activates endothelium. It causes WBC recruitment and vascular leak. It causes cachexia in malignancy.
Interferon-gamma
It is secreted from Th1 cells. It is also secreted by NK cells in response to IL-12 from macrophages. It also stimulates macrophages to kill phagocytosed pathogens. It also activates NK cells to kill virus-infected cells. It increases MHC expression and antigen presentation by all cells.
IL-10
It is secreted by Th2 cells. It modulates inflammatory response. It also decreases expression of MHC class II and Th1 cytokines (interferon-gamma). It also inhibits activated macrophages and dendritic cells. It is also secreted by regulatory T cells. Both TGF-beta and IL-10 both atTENuate the immune response.
Cytokines secreted by macrophages
IL-1, IL-6, IL-8, IL-12, TNF-alpha.
Cytokines secreted by all T cells
IL-2 and IL-3
Cytokines secreted by Th1 cells
Interferon-gamma
Cytokines secreted by Th2 cells
IL-4, IL-5, and IL-10
Respiratory burst (oxidative burst)
It involves the activation of the phagocyte NADPH oxidase complex (eg in neutrophils, monocytes), which utilizes O2 as a substrate. It plays an important role in the immune response by causing a rapid release of reactive oxygen species (ROS). NADPH plays a role in both the creation and neutralization of ROS. Myeloperoxidase is a blue-green heme-containing pigment that gives sputum its color. Phagocytes of patients with chronic granulomatous disease can utilize H2O2 generated by invading organisms and convert it to ROS. Patients are at an increase risk for infection by catalase positive species (eg S. aureus, Aspergillus) capable of neutralizing their own H2O2, leaving phagocytes without ROS for fighting infections.
Pyocyanin
Produced by P. aeruginosa, functions to generate ROS to kill competing microbes.
Lactoferrin
A protein found in secretory fluids and neutrophils that inhibits microbial growth via iron chelation.