Immuno Flashcards
antibody
also known as an immunoglobulin; large Y-shape proteins produced by plasma cells used by the immune system to identify and neutralize foreign objects (i.e., bacteria and viruses)
- has high affinity binding sites for specific foreign structure (antigens), at other end are Fc regions (sites for effector cells or proteins to bind)
- involved in neutralization, opsonization, help fix complement on surface (acts as better opsonist)
gamma globulin
substance made from donated human blood plasma that contains antibodies that protect the body against diseases
IgG
- most common immunoglobulin type with widest range of dunction
- toxin neutralizing, opsonizing, bacteriolytic with aid of complement system
- subclasses with distinct functions; intrachain disulfide bonds between same residues
- ability to be transported across placenta and diffuse extravascularly
IgM
- most primitive immunoglobulin type and is most potent at complement fixation but can’t directly mediate many fuctions (e.g., ADCC or opsonization)
- heavy, usually found in a pentamer with J chain
- found earliest in immune response
- antigen receptor on B cell and agglutinating, cannot aid in opsonization without complement (immune cells don’t have IgM receptors)
IgA
- 2 forms, one of which is secreted through epithelial cells where it picks up a secretory piece (T piece) that inhibits degradation by acid hydrolysis, passes through breastmilk
- forms dimer with J chain
IgD
coexpressed with IgM on surface of B-cells, may function as antigen receptor
IgE
- associated with immune response to parasites
- immediate hypersensitivity (allergies): fixes to mast cells to active them, causing release of granule contents
- hardly any in circulation because it sticks to cells quickly
proteolytic cleavage of immunoglobulin
enzyme cleaves disulfide bonds→2 distinct fragments
- **antigen binding fragment (Fab): **heavy and light chain variable regions contain *3 hypervariable regions each *which come together to form antigen binding pocket, framework residues orient
- Crystallizable (repeating) Fc: contains most of the specific antigenic determinants; receptor on cells for binding immunoglobulin is called Fc receptor
how can antibodies be so specific to such a variety of antigen?
- pieces of DNA (V, D, and J) signaled by RSS motifs are randomly chosen and brought together by recombinases (RAG1 and RAG2) to form array of antibody molecules
- as cell develops, germline is edited
- joining is imprecise
- most rearranged genes won’t function, leads to loss of many T/B precursors; can try again with further editing
polyclonal antibodies
collection of immunoglobulin molecules secreted by different B cell lineages within the body that react against a specific antigen, each identifying a different epitope
affinity purification
bind the specificity you want to the antibody and wash away the rest; can also use to concentrate a weak antibody into a stronger one
adsorb non-specific antisera
opposite of affinity purification, remove the activity you don’t want by binding it up and then washing it away
monoclonal antibody
made from a single cloned B-cell with one specificity that can last forever, huge amounts can be produced
- Fuse myeloma cells with B cells from mouse immunized with antigen, grow in drug-containing medium to kill off unattached/fused myeloma (B cells die in time), select for antigen specific hybridoma
- Less cross reactivity but has lower affinity and very little avidity (artificial measure of affinity based on having lots of different sites binding at once, higher chance of antibody falling off)
what is serum sickness and how can it be avoided?
type of hypersensitivity that is an immune reaction to injected proteins used to treat immune conditions or antiserum; avoid by using human or partially human antibodies
- Chimeric: variable region from mouse
- Humanized: hypervariable region from mouse
- Human
why use secondary antibodies instead of just primary antibodies?
saves work and has a more consistant antibody that just using primary antibody and washing the rest away
Enzyme Linked Immuno Sorbant Assay (ELISA)
- antigen stuck to bottom of well/tube, antibody added, unbound antibody washed away, second antibody with enzyme bound binds to first antibody, unbound second antibody washed away
- amount of second antibody is detected by adding chemical reagent that turns color in presence of enzyme bound to second antibody
immunoflourescence
similar to ELISA except second antibody specific to first antibody has fluorescent molecule that emits visible light when exposed to UV light
Western Immunoblot
- separated proteins are bound to nitrocellulose, antibody to protein of interest is reacted to nitrocellulose and specific antiserum binds, unbound antibodies washed away and specific antibodies are detected like ELISA
- results are quantitative and qualitative: amount, molecular weight, and different forms of antigen
FACS/Flow Cytommetry
- scan large numbers of cells for fluorescence and cell size using highly focused lasers
- flow cytometers are only capable of analyzing cells
- cell sorters can analyze and sort cells by the amount of fluorescence
phases of primary immune response
- Lag/inductive/latent phase: after initial exposure there is a period of time before antibody can be detected
- Logarithmic/exponential increase in antibody concentration
- Steady state at peak antibody concentration
- Decay/decline followed by an extended period of time when a small amount of antibody can be detected
how does the secondary immune response differ from the primary immune response?
after initial exposure to antigen (and resulting immune response) immune system remains primed to respond to that antigen
- Shorter lag time
- Higher rates of antibody synthesis
- Higher peak of antibody titer
- Longer persistence of antibody (e.g., need tetanus booster every 10 yrs)
- Immediate production and predominance of IgG; IgM response remains the same
- Higher affinity of antibody
- Requires less antigen to mount response
toxin vs. toxoid
- Toxin: protein that will kill you, will not necessarily induce immune response
- Toxoid: same protein that has been modified to induce an immune response (antigenically the same) but it will not kill you
clonal selection theory
- accounts for shorter lag time in secondary response
- B cells develop specificities and when they respond to antigen it is activated to begin clonal expansion, the next time antigen comes along there are multiples of that B cell to respond
class switch
Over time, B cells undergo class switch from IgM expression to IgG expression
- these memory B cells persist longer
- this account for the higher rates of antibody synthesis and immediate production and predomindance of IgG class during secondary response
affinity maturation
immune system selectes for higher affinity antibodies: the higher affinity the B cell is to the antigen, the longer the B cells are stimulated and can clone
how do T cells assist B cells in the immune response?
T helper cells react with antigen on surface of antigen presenting cells via MHCII and co-stimulatory molecules, proliferate and produce factors that stimulate B cells to produce the same antigens that act as co-stimulators (which they can then present to T cells to continue response)
- recognizes self vs. foreign proteins
- makes cytokine
innate immune response
rapid, constant fixed response involving:
- barriers i.g, skin
- phagocytes: recognition, engulfment, degradation of bacteria
- complement: group of serum proteims that recognize bacterial and help clear them
adaptive immune response
takes days and involves antibodies, T-cell recognition, cell mediated activation of innate immune system
B cell
small lymphocyte that expresses immunoglobulin on its surface
monocyte
circulating precursor cell to macrophage
PMN/Neutrophil
phagocytose and kil microorganisms
eosinophil
kill antibody-coated parasites through release of granule contents
mast cell
involved in expulsion of parasites from body through release of granules containing histamine and other active agents
dendritic cell
activate T cells and initiate adaptive immune response
cytokines
proteins that alter response of immune system
hapten-carrier effect
hapten is seen by B cells and carrier is seen by T cells; proved that something had to be seen by T cells in order to get the B cells to work in both primary and secondary immune responses
antigen presenting cells
(e.g., macrophages and dendritic cells) take up antigen, chop it up, and present it on the surface as small peptides on MHCII molecules
- T cells see the whole antigen in the context of MHCII
- APC must provide a second or co-stimulatory signal in order for T cell to divide and start producing cytokine
adjuvant
compound that increases the immunogenicity of an antigen by subverting the immune response to particular cell types (e.g., by activating T cells instead of B cells)
- most common in vaccines in aluminum salt
V region
variable region, considerable distance away on same chromosome as J and D segments
J region
variable region in CDR3 region (site nearest constant region); doesn’t change relative position in genome in IgM/IgD producing B cells compared to the rest of the body but it changes in all other Ig producing B cells; implies rearrangement of DNA
D region
diversity region in CDR3 region; segment has different configuration in all B cells compared to its germ line position
junctional diversity
novel genetic sequences replace germline sequences in heavy and light chains
- P nucleotides are found in all joining junctions
- N nucleotides added by Tdt enzyme found only in developing B cells in the proB stages after birth; add random nucleotides to V-D and D-J joins
class switching
Selective splicing of primary RNA transcripts is a mechanism to switch from IgM to IgD
- T cell help must first signal for activation-induced cytidine deaminase
- ·when transcript of Ig with M on surface is made, same transcript has coding part for IgD
- edit to create different heavy chains: IgM secreted, IgM transmembrane or IgD transmembrane
somatic hypermutations
when a cell is stimulated during an immune response (particularly with T cell help→AID) AID enzyme attacks certain regions of DNA, allows for another editing (irreversible)
- Induces mutations which allows variable region to be joined to a new constant region; section of DNA is looped and cut out to allow VDJ to combine with γ chain (makes IgG)
- Responsible for affinity maturation: seen where antigen and antibody are in contact; improve affinity in places where antigen contacts the antibody
describe the course of immigration/emigration to the thymus
- Thymic anlage makes chemotactic factors that attract prothymocytes derived from fetal liver and bone marrow
- cells enter thymus at cortico-medullary junction via blood vessels
- mature T cells leave via venules in medulla→secondary lymphoid organ where they complete maturation
- migration controlled by chemokines and sphingosine 1-phosphate receptors
what is the function of the thymus
identified as important by immunodeficiencies that cause loss of T cell function
- T cells become MHC restricted, lineage committed, and tolerized to self-antigens
- function declines with age (T cells last)