Immunity, Infection & Forensics Flashcards
Describe body temperature as part of forensic analysis.
Body cools due to lack of heat producing reactions e.g. respiration. Heat is also transferred from the body surface to the environment by radiation, conduction + water evaporation. Follows sigmoid curve. Only useful for 24 hours after death. Measured via rectum or abdominal stab.
Fever or hypothermia will affect body temperature at time of death.
Body size, position, clothing, air movement, humidity and temperature of surroundings will affect cooling of the body.
Describe rigor mortis as part of forensic analysis.
Muscle cells are oxygen starved so aerobic reactions stop. Respiration becomes anaerobic and cell pH falls due to production of lactic acid. Enzyme activity is inhibited. ATP for muscle contraction is no longer produced. Bonds between muscle proteins become fixed. Proteins can no longer move over each other to shorten the muscle, fixing the muscles and joints in one position. (8-36 hrs)
Affected by:
ATP levels in muscles before death - depends on level of activity before death. Low ATP = faster rigor mortis.
Temperature - high temp = fast + short rigor mortis
Smaller muscles stiffen before larger ones as they have smaller ATP store.
Not permanent, passes after 36-48 hrs after death - enzymes (lysosomes) start to break down muscle tissue.
Describe decomposition as part of forensic analysis.
Autolysis occurs when enzymes break down cells. Putrefaction is a green discoloration of the lower abdomen due to formation of sulfhaemoglobin. Darkens to red-green then to purple-black.
Gas or liquid blisters may appear.
The body bloats due to action of anaerobic bacteria which produce gases like hydrogen sulphide, methane, CO2, ammonia and hydrogen in intestines and tissues.
Rate affected by temp, injuries, clothing.
What is forensic entomology?
Study of the succession of insects on the body after death.
Describe Forensic Entomology as part of forensic analysis.
Records are taken about:
* The body location
* The body condition
* The location of maggots & insects on, under and around the body
Samples of each insect, maggot and larvae are collected and grown to maturity in the lab to identify each species & age determined using stage of life cycle or length of maggots. This gives information about when the eggs were laid which provides a minimum time since death.
Flies could have taken time to locate body & other factors can influence maggot growth.
The temperature of the air, ground, body and ‘maggot mass’ are measured to determine the rate of maggot development.
Describe introns.
Introgenic regions, non-coding blocks.
Within introns, there are series of repeated bases - short tandem repeats.
Define exons.
Expressed, coding regions.
What can DNA profiling also be known as?
Genetic fingerprinting or DNA fingerprinting.
Describe how to obtain a tissue sample/ sources of DNA.
Any biological tissue from plants or animals can be used. Cheek swab cells, white blood cells in a blood smear, bone marrow in a skeleton, sperm, skin, hair, saliva and sometimes fingerprints.
Describe how to extract DNA from cells.
The cell membrane is disrupted in a buffer solution containing salts and detergent. The DNA is separated from the rest of the cellular components by centrifugation. The sample is incubated with proteases. The DNA is precipitated out and washed by using ice-cold ethanol.
Describe polymerase chain reaction (PCR).
A sample of tissue is added to DNA polymerase, DNA primers and DNA nucleotides.
95°C the DNA separated into two strands.
55°C primers anneal at the either side of the section of DNA to be amplified.
70°C Taq polymerase binds to primer region, nucleotides are added. The STR and DNA sequence are replicated.
The cycle is repeated to make multiple copies of DNA/ amplification.
Describe gel electrophoresis.
Amplified DNA is seperated into DNA fragments using restriction enzymes/ endonucleases. Load DNA onto agarose gel and add TAE buffer. An electric current is applied which causes DNA fragments to move. The fragments can be visualised using southern blotting or flourescent probes and seeing under UV light. Smaller fragments travel faster.
What are the 4 shapes of bacteria?
- cocci
- vibrios
- bacilli
- spirilla
What are the 2 types of bacteria?
- Gram positive bacteria
- Gram negative bacteria
What is lipopolysaccharide (LPS)?
Important outer membrane component of gram negative bacteria.
How does LPS affect staining of bacteria?
LPS is an endotoxin: it blocks antibiotics, dyes and detergents so it protects the thin inner membrane and cell wall of gram negative bacteria. Makes them resistant to pencilin and lysosome.
Gram negative bacteria reject stain so remain pink.
Gram positive bacteria take up stain so turn purple.
Give the name for asexual bacteria reproduction.
Binary fission
Describe binary fission.
- Bacteria reaches a certain size
- DNA is replicated
- Old cell wall begins to break down around middle of cell
- DNA is associated with cell membrane. Cell pinches together forming a septum
- Two new identical daughter cells are formed. Plasmids often divide at the same time
- time between the divisions is the Generation Time
What are the 3 forms of bacterial sexual reproduction?
- Transformation
- Transduction
- Conjugation
Horizontal gene transfer
Describe Transformation
A short piece of DNA is released by a donor (which does not need to be alive) or the DNA is in the ‘environment’. This is actively taken up by the recipients. The new DNA replaces a similar piece of DNA in the recipient.
Describe Transduction
A small amount of DNA is transferred from one bacterium to another by a bacteriophage.
Describe Conjugation
Plasmid DNA is transferred from one bacterium to another by direct contact. The donor cells (F+) produces a sex pilus. A cytoplasmic bridge is created to the recipient cell (F-). DNA is transferred through the pilus.
What are viruses?
Small organic particles with a structure that is quite different from that of bacteria and much simpler.
What do viruses consist of?
They consist of a strand of nucleic acid (DNA or RNA) enclosed within a protein coat (capsid). Viral DNA can be single or double stranded.
Describe viral replication
- Virus attaches to host cell
- Virus inserts nucleic acid
- Viral nucleic acids replicate
- Viral protein coats synthesised
- New virus particles formed
- Virus particles released due to cell lysis
Describe the conseqence of viral replication cell lysis to host cell.
It kills the host cells and it results in cell contents e.g. enzymes and other chemicals being released damaging neighbouring cells. This can result in the disease symptoms produced by the viral infection.
Describe the viral envelope.
Some viruses have an outer envelope taken from the host cell’s surface membrane, contains lipids and proteins. It also has glycoproteins from the virus itself which are antigens - helps virus attach to cell and penetrate the surface membrane.
What are the two pathways for viral reproduction.
- Lytic pathway
- Lysogenic pathway
Describe the lytic pathway.
- Viral genetic material is replicated independently of the host DNA straight after entering the host cell.
- Mature viruses are made by the host cell
- Cell bursts and releases large numbers of new virus particles
- These go on to invade other host cells
- The virus is said to be virulent (disease causing)
Describe the lysogenic pathway.
- Viruses are non-virulent when they first get into the host cell
- They insert their DNA into the host DNA so it is replicated every time the host cell divides
- No mRNA is produced from viral DNA because one of the viral genes causes the production of a repressor protein.
- This makes it impossible to translate the rest of the viral genetic material.
- The virus remains dormant and becomes lytic and therefore virulent under the right conditions.
Give the 4 major entry routes of pathogens into the body.
- Cuts in the skin
- Through the digestive system via contaminated food or drink
- Through the respiratory system by being inhaled
- Through other mucosal surfaces e.g. inside of nose, mouth, genitals.
List the 6 major transmission routes of pathogens into the body.
- Inhalation
- Direct Contact
- Inoculation
- Vectors
- Ingestion
- Fomites
Describe inhalation as a transmission route.
Breathing in of lipid droplets containing the pathogen which were previously expelled from a respiratory tract (e.g. by cough/ sneeze).
Describe direct contact as a transmission route.
Can occur from sharing needles, unprotected sex, direct blood-to-blood transfer through cuts and grazes, maternal transmission from mother to unborn child in breast milk.
Describe inoculation as a transmission route.
Pathogens enter the body directly through a break in the skin e.g. dog bite, tattooing, infected needle.
Describe vectors as a transmission route.
A living organism that transmits infection from one host to another e.g. mosquito’s - malaria.
Describe ingestion as a transmisssion route.
Consuming contaminated food or drink leads to vomiting and diarrhoea. Greatest risk from raw/ undercooked food.
Describe fomites as a transmission route.
Inanimate objects that carry pathogens from one host to another. e.g. hospital bedding, towels.
Describe the skin as a barrier from infection.
Contains the tough protein keratin, however the skin can be breached by wounds. Blood clotting prevents this. Skin flora outcompetes and prevents colonisation by other bacteria.
Describe the mucosal membranes as a barrier from infection.
Line the airways and the gut. The mucus traps microbes and other particles. Beating cilia carry the mucus up to the throat to be swallowed. Secretions from eyes & nose contain the enzyme lysozyme that breaks down bacterial cell walls causing them to burst.
Describe stomach acid as a barrier to infection.
Contains hydrochloric acid, giving a pH of less than 2.0. This kills most bacteria that enter with food or drink. This is also the optimum pH for the digestive enzyme pepsin.
Describe the gut flora as a barrier to infection.
Beneficial bacteria found in both intestines. We have a mutualistic relationship with them. They aid digestion and outcompete pathogenic bacteria for food and space - competitively exclude pathogenic bacteria. The bacteria also secrete chemicals (lactic acid) to aid the defence against pathogens.
What 2 things can happen when bacteria get into the body?
- They grow in a localised area
- Get into the blood supply and get carried around the body
How do bacteria make people unwell?
Through the toxins bacteria produce either as by-products of their metabolism or part of their parasitic lifestyle to incapacitate their host or its immune response.
2 types of toxins?
- Endotoxins
- Exotoxins
Describe endotoxins.
- Lipopolysaccahride part of outer layer of gram negative bacteria. Released on the death of bacteria.
- Rarely fatal
- Tend to cause symptoms such as fever, vomiting and diarrhoea
- The symptoms can indirectly lead to detah e.g. by dehydration
Describe exotoxins.
- Soluble proteins
- Produced and released into the body by bacteria as they metabolise and reproduce. Stronger ability to trigger an immune response
- Rarely cause fever
- Responsible for some of the most dangerous and fatal bacterial diseases
Describe what is meant by the non-specific immune response and its purpose.
- Response that is effective against wide range of infectious agents/ pathogens
- Does not involve recognition of pathogen
- Does not react to specific antigens (memory cells not present)
To destroy, prevent the multiplication and spread of invading pathogens.
Give the 4 main processes of the non-specific immune response.
- Lysozyme action (secretions in the mouth, eyes, nose)
- Inflammation (release of histamine)
- Interferon (anti-microbial proteins)
- Phagocytosis