Hard Terms Flashcards

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1
Q

Mid-Blastula Transition

A

After the nuclei have reached the periphery, characterised by slowing down of nuclear division, cellularisation and increase in RNA transcription… ■ Zygotic gene transcription is enhanced… Maternal-to Zygotic transition.
■ Phase controlled by
■ Ratio of chromatin to cytoplasm

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2
Q

Drosophila gastrulation

A
  • A furrow of presumptive mesoderm folds inwards to form the ventral furrow which then pinches off to become a ventral tube (no dorsal tube)
  • the endoderm at each end folds inwards to form the cephalic furrow and the posterior transverse folds respectively
  • the ectoderm along the ventral midline forms the germ band, which extends posteriorly, so that it wraps around the dorsal side of the embryo towards the head (confined by the egg case which doesn’t grow)-this retracts later
  • segmentation lines begin to appear on the surface of the embryo–can now distinguish the head, thorax, and abdominal segmental regions
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3
Q

What triggers the invagination of the mesodermal cells

A
  • The mesodermal cells at the ventral side invaginate and buckel inwards to form the ventral tube.
  • Staining of nuclei with a protein that is marker for mesoderm.
  • Fgf8 receptors present in the mesoderm cells, fgf8 ligands expressed by the cells above mesoderm (mesectoerm).
  • Fgf8 binds to fgf8 receptors and triggers the invagination of the mesodermal cells within the embryo.
  • fgf= fibreglass growth factor
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4
Q

Pre-Gradient: Pattern formation in Drosophila in the syncytial cytoplasm-by a hierarchy of gene action that sets up gradients of morphogenetic proteins

A
  • Maternal mRNA molecules, from maternal genes are deposited (even tethered) at the anterior and posterior ends of the egg and are translated into proteins, which diffuse throughout the syncytial blastoderm, setting up a gradients
  • These proteins enter the cleavage stage nuclei and activate or repress other maternal or zygotic genes, establishing another round of patterning
  • Broad regions are established first, then these are refined to to produce segmental identities
  • There is a strict temporal sequence of gene action-a real hierarchy
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5
Q

Formation of the terminal regions of a Drosophila embryo by torso signalling

A
  • Huckbein (hkb) and tailless (tll) along with bicoid protein form the acron.
  • Huckbein (hkb) and tailless (tll) are activated by torso signal at area of low Capicua expression form telson
  • Hkb+Tll act of own = forms telson
  • Hkb+Tll+bicoid = forms acorn
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6
Q

Hedgehog signaling: Drosophila early development

A

in absence of Hh binding to patched, Ci is weathered to mtubules by Cos2 and fused proteins.
•allows PKA and Slimb portions cleave Ci into a transcriptional repressor that blocks transcription of particular genes
•when Hh binds to patched, conformational changes releasing inhibition of smoothened protein.
•Smoothened then releases Ci from m.tubules (P Cos2 and Fused)
•Inactivates cleavage proteins PKA and Slimb
•Ci origin enters nucleus binds CBP proteins and acts as a transcriptional actuator of a particular gene.

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7
Q

Paracrine regulation of wingless and hedgehog transcription

A
  • Reciprocal interactions between neighboring cells:
  • Cells secreting hedgehog activate the transcription of wg.
  • wg binds to frizzled, activates Dsh inhibts GSK which activates B-cat which activated Hh
  • Cells secreting wg activate the transcription of en and hedgehog.
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8
Q

Homeotic Selector Genes

A
  • Homeotic gene contains homeobox sequence that codes for a 60 amino acid homeodomain protein.
  • Homeodomain is a helix-turn-helix motif.
  • Gives segment it’s identity
  • They activate segment-specific traits like wings, legs and balancers on the thorax; antenna and eyes on the head.
  • Drosophila has 8 homeotic genes clustered in 2 complexes.
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9
Q

Mutations of homeotic genes

A
  • Mutations in cis-regulators of ultrabithorax gene transforms 3rd thoracic segment to another 2nd thoracic segment
  • Misexpression of Antennapedia gene in the head convert antennae into legs in the head.
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10
Q

Mechanism of homeotic gene transctiption

A
  • Homeotic genes are regulated by gap and pair-rule genes which are transient!!!
  • The functions of gap and pair-rule genes are taken over by two groups of proteins (Chromatin modifiers):
  • Polycomb group of proteins (-ve regulators; repressor)
  • Trithorax proteins (+ regulators; activators)
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11
Q

Formation of the primitive Streak

A
  • thickening of epiblast (and the Kohler’s sickle) [3-4hrs]
  • cell converge form depression called primitive groove [7-8hrs streak, 15-16hrs groove]
  • cells move through groove to the deeper layers cells in anterior layer thicken and form hensons’ node (primitive knot) [19-22hrs] The streak starts at the posterior margin of the epiblast, and elongates anteriorly
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12
Q

Neural plate: formation and future

A

broad ectodermal thickening on top of the Henson’s node. Neural plate eventually grows and folds over to form a tube called the neural tube

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13
Q

Induction of Organizer & -what Inhibits the Primitive Streak

A
  • Posterior Marginal Zone contains cells which are equivalent to Nieukoop Centre. •Koller’s sickle is equivalent to Nieukoop Center.
  • Nodal activity is high in the region where primitive streak is formed.
  • In the rest of PMZ cerberus inhibits the formation of primitive streak
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14
Q

Specification of chick anterior-posterior axis by gravity

A

Rotations of the ovum in the oviduct at 15rph. Centerfugal forces applied to egg. Separate molecules based i density. Yolk rotes and lighter part of yolk in on top and denser darker is on bottom. Therefore blastoderm laughter sure is on the posterior side. Leads to the movement of light yolky region towards the posterior side.

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15
Q

Experiment: Formation of Henson’s node from Koller’s sickle

A

Just before gastrulation, cells in the anterior end of Koller’s Sicle (epiblast and middle layer) were labelled with green dye. Cells in the posterior portion of Koller’s Sickle were labelled with red dye. As the cells migrated, the anterior cells formed the Henson’s Node and its notochord derivates. The posterior cells formed the primitive streak.

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16
Q

Integrins

A
  • bind to extracellular fibronectin and intracellular cytoskeleton (actin)
  • TMP (trans membrane protein) with an alpha and beta subunit
  • allows cell to move by contracting the actin againsted the fixed extracellular matrix. •integrins can signal from outside in altering gene expression
  • Adherin junction (where one cadherin attaches to the other cad herein) basis on forming the epithelium
  • ECM (extra cellar membrane) around cells
  • interns NB for cell-ECM interactions
  • when signalling received, alpha beta subsets are rendered apart. Heads no longer bent but straight
  • 70 armstrong (70ºA)
  • inactive integrin is close
17
Q

4 Steps in Cell Migration

A
  1. Cells become polarized (form a front and rear end):
    • The process involves the reorganization of actin cytoskeleton.
    • Polarisation is directed by signals (eg. chemotactic or extracellular matrix)
  2. Protrusion of cells leading edge: • Polymerization of G-actin to F-actin
    • Formation of filopodia.
    • Signaling Rho-GTPase activated
  3. Adhesion of the cell to the extracellular matrix (ECM):
    • Integrins on cell membrane attaches to ECM (focal adhesion) and to actins within the cell.
  4. Release of the adhesion in the rear end
18
Q

Epithilial-Mesenchyme Transition (EMT)

A

Steps:
•cells attached to each other by adherens junctions with cadherin and actin rings
•intergrin attached cell to basal lamina
•signals from paracrine factors
•cell adhesion is broken and the basement membrane (basal lamina) dissolved
•cell released from basement membrane become mesenchyme
•mesenchyme can form mesoderm

19
Q

Neural Crest gives rise to 4

A

1) neurons and glial cells of sensory, sympathies and parasympathetic nervous system
2) Epinephrin producing medulla of adrenal glands
3) forms melanocytes
4) many skeletal and cognitive tissues of the head

20
Q

Limb bud-Apical Ectodermal Ridge (AER) formation

A
  1. Induction of Precursors
  2. Migration of Precursors
  3. Compaction of the precursor cells to form tall ridge
    •Ecctodermal cells and mesodermal are in limb bud.
    •Ectodermal cells are in the AER which comprises of compacted cells resulting in pesudocolumuna cells (not actaully collumar cells)
    •The mesoderm involved is the lateral plate meso that gives rise to bones cartilage.
21
Q

Proximal-Distal Axis Formation in limb bud

A

AER influences the underlying limb mesoderm.
• Zone immediately next to the AER is the progress zone (distal mesenchyme).
• The cells in the progress zone proliferate and are undifferentiated.
• As the cells leave this zone they begin to differentiate.

22
Q

ZPA express SH

A
  • Sonic hedgehog (shh) gene is expressed in the precise location of the ZPA-it is induced to be expressed by retinoic acid and ectodermal FGF8
  • cells transfected with virus containing the sonic hedgehog gene acquire the properties of a ZPA (see next slide)
  • beads soaked in sonic hedgehog protein will act in place of a ZPA in transplants
  • in humans, polydactyly (extra digits) may be related to ectopic expression of sonic hedgehog
23
Q

ZPA formation

A

•Stg 17: Induced AER secretes Fgf8 into the underlying mesenchyme.
•Underlying mesenchyme expressing Hoxb8 is induced to express SHH forming ZPA in the posterior margin
.Stg 18: SHH maintains FGF in the AER and FGF maintains SHH in + feedback loop.

24
Q

Early interactions between AER and limb-bud : SHH

A

• As limb bud grows, the ZPA region is induced. •ZPA region is where SHH is active. •SHH turns on activation of Grem1 which is inhibitor of BMP pathway. • Once Bmp is inhibited, Fgf8 can be expressed and that’s where we have AER secluded to small region of ectoderm. •Posterior is En1 and anterior is Wnt7a expressed. That’s how you get borders of AER. Dorsal has Wnt7a but not ventral side. •First is proximal-distal established, then anterior posterior, then dorsal ventral.

25
Q

Segregation of P-granules in C. elegans

A
  • Germ plasm is called P granules and is asymmetrically localized in a germ line precursor cell called P4 blastomere.
  • P granule has transcription repressors, RNA binding proteins Vasa, Nanos,etc.
  • Germ plasm also contains PIE-1 protein that prevents RNA polymerase II so that it doesn’t become a somatic cell
26
Q

Asymmetry at Fertilization in C. elegans

A
  • Par 1 and 2: inner cytoplasmic whereas Par 3,6 and PKC are present in the cortical cytoplasm.
  • Par 1/2 are posterior, Par 3/6 are anterior
  • Germ Plasm in P4 blastomere
  • Upon fertilization the microtubule of sperm centrioles organize the Par 2 along with its binding partner Par 1 proteins in the cortical cytoplasm of the posterior region.
  • Par 3 and 6 are secluded to anterior region
  • Transciption repressors prevent RNA polymerase II binding.