Glycolysis and PDH Flashcards

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1
Q

Glycolysis

A
  • splitting of 1 6-carbon glucose into 2 3-carbon pyruvate molecules
  • NAD+ is reduced to NADH
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2
Q

Aerobic glycolysis

A
  • when O2 supply is plentiful, NADH reoxidised to NAD+ via mitochondria
  • pyruvate taken up by mitochondria, metabolised to CO2 and H2O via TCA cycle
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3
Q

Anaerobic glycolysis

A
  • NADH production exceeds the capacity of the electron transport chain
  • Pyruvate is converted to lactate by lactate dehydrogenase
  • Converts NADH back into NAD+, lowering the level of NADH
  • Reduces intracellular pH
  • Lactate diffuses out into bloodstream & is processed by the liver to produce glucose
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4
Q

Significance of glycolysis

A
  • only pathway that takes place in all cells of the body
  • only source of energy in erythrocytes and only fuel normally used by neurones
  • provides carbon skeletons for synthesis of non-essential amino acids as well as glycerol part of fat
  • Most reactions of glycolytic pathway are reversible, which are used for gluconeogenesis
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5
Q

Glycolysis in exercise

A
  • Rapid formation of energy during short-term strenuous exercise: glycolysis could support activity up to c. 2 minutes
  • Cardiac muscle is adapted for aerobic performance: doesn’t fatigue like skeletal muscle, has low glycolytic activity, rapidly damaged under ischaemic conditions
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6
Q

Site of glycolysis

A
  • occurs in the cytosol of all the cells of the body
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7
Q

Two phases of glycolysis

A
  • energy investment (reactions 1-5)

- energy generation (reactions 6-10)

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8
Q

Energy investment (reactions 1-5)

A
  • sugar phosphates are synthesised at the expense of ATP -> ADP
  • the sugar is metabolically activated by phosphorylation
  • 6C split into 2x3C sugar phosphates (triose phosphates)
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9
Q

Energy generation (reactions 6-10)

A
  • further activation of triose phosphates to energy-rich compounds
  • reduced electron carriers are generated (NADH)
  • the energy-rich compounds then transfer phosphate to ADP to form ATP = substrate-level phosphorylation
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10
Q

Substrate-level phosphorylation

A
  • generation of an energy-rich phosphate bond driven by the breakdown of a more energy-rich substrate
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11
Q

Hexokinase reaction: phosphorylation of hexoses (mainly glucose)

A
  • Hexokinase is present in most cells.
  • In liver, Glucokinase is the main hexokinase (both ISOENZYMES) which prefers glucose as substrate
  • It requires Mg-ATP complex as a substrate. Uncomplexed ATP - potent competitive inhibitor of this enzyme.
  • Enzyme catalyses the reaction by bringing the two substrate in close proximity.
  • This enzyme undergoes large conformational change upon binding with glucose. It is inhibited allosterically by G6P.
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12
Q

Hexokinase

A
  • high affinity for glucose
  • Non-specific, can phosphorylate any of hexoses
  • Present in tissues, supplies glucose to tissues even in low blood glucose concentration
  • Not effected by insulin
  • Allosterically inhibited by glucose
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13
Q

Glucokinase

A
  • low affinity for glucose
  • Specific, can phosphorylate only glucose
  • Present in liver only
  • Helps drive movement of glucose from blood to cells after meal
  • Stimulated by glucose and insulin
  • Not inhibited by glucose-6-phosphate
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14
Q

Phosphohexose Isomerase: Isomerization of Glucose-6-Phosphate (G6P) to Fructose-6-phosphate (F6P)

A
  • catalyses the reversible isomerization of G6P - (an aldohexose) to F6P - (a ketohexose)
  • requires Mg++ for its activity.
  • specific for G6P and F6P
  • extracellular PGI have multiple additional roles in health and disease: neural growth factor, driver of cancer cell metastasis and maturation
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15
Q

Phosphofructokinase-1 (PKF-1) Reaction: Transfer of phosphoryl group from ATP to C-1 of F6P to produce Fructose 1,6 bisphosphate

A
  • important irreversible, regulatory step.
  • PFK-1 is one of the most complex regulatory enzymes, with various allosteric inhibitors and activators.
  • ATP is an allosteric inhibitor, and Fructose 2,6 biphosphate is an activator of this enzyme.
  • ADP and AMP also activate PFK-1 whereas citrate is an inhibitor.
  • PFK-1 has 3 different sub-units whose distribution may be tissue-specific
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16
Q

Aldolase Reaction: Cleavage of Fructose 1,6 bisphosphate into glyceraldehyde 3 phosphate and dihydroxy acetone phosphate.

A
  • Conversion of aldose to ketose
  • catalyses the cleavage of F1,6 biphosphate by aldol condensation mechanism.
  • standard free energy change is positive in the forward direction, meaning it requires energy.
  • Driven forwards due to subsequent reactions
  • Ensures rapid aldolase-driven conversion
  • “moonlighting” roles e.g. cell structure, endocytosis, cancer cell survival and protein mediated transport
17
Q

Triose phosphate isomerase reaction: Conversion of Dihydroxyacetone phosphate to glyceraldehyde 3 Phosphate

A
  • reversible reaction catalysed by acid-base catalysis
  • Histidine-95 + Glutamate-165 residues of the enzyme are involved
  • Triosephosphate Isomerase Deficiency: number of rare metabolic disorders linked to glycolysis enzymes, chronic haemolytic anaemia
18
Q

Glyceraldehyde-3-phosphate dehydrogenase reaction (GAPDH): Conversion of GAP to Bisphosphoglycerate

A
  • Oxidation of aldehyde derives the formation of a high energy acyl phosphate derivative.
  • Pi is incorporated in this reaction without any expense of ATP.
  • NAD+: cofactor in this reaction which acts as an oxidizing agent. The free energy released in the oxidation reaction is used in acyl phosphate formation
  • Appears strongly linked to control of cell survival or apoptosis in response to multiple factors e.g. oxidative stress, starvation and toxic compounds
19
Q

Phosphoglycerate kinase Reaction: Transfer of phosphoryl group from 1,3 bisphosphoglycerate to ADP generating ATP

A
  • catalyses the formation by proximity effect. ADP-Mg bind on one domain and 1,3BPG binds on the other and a conformational change brings them together similar to hexokinase.
  • coupled reaction generating ATP from the energy released by oxidation of 3-phosphoglyceraldehyde
  • generates ATP by substrate-linked phosphorylation
  • Linked to roles in interaction with DNA/RNA, cell death and viral replication
20
Q

Phosphoglycerate Mutase Reaction: Conversion of 3-phosphoglycerate to 2-phosphoglycerate (2-PG)

A
  • transfer of the phosphoryl group form enzyme to 3-PG, generating enzyme bound 2,3-biphosphoglycerate (2,3BPG) intermediate
  • phosphoryl group from the C-3 of the intermediate is transferred to the enzyme and 2-PG is released.
  • traces of 2,3BPG present in most cells, but in erythrocytes, it is present in significant amount, affects oxygen affinity to Hb
21
Q

Enolase Reaction: Dehydration of 2-phosphoglycerate (2-PG) to phosphoenolpyruvate (PEP)

A
  • increases the standard free energy change of hydrolysis of phosphoanhydride bond
  • rapid extraction of proton from C-2 position by general base on enzyme, generating a carbanion. The abstracted proton is readily exchanges with solvent.
  • second rate limiting step involves elimination of -OH group generating PEP
22
Q

Pyruvate Kinase Reaction: Transfer of phosphoryl group from PEP to ADP generating ATP and Pyruvate

A
  • second substrate level phosphorylation reaction of glycolysis
  • couple the free energy of PEP hydrolysis to synthesis of ATP
  • requires Mg++ and K+
  • also linked to roles in cell regulation
23
Q

Products of glycolysis

A
  • 1Gluc + 2NAD+ + 2ADP + 2Pi = 2pyruvate + 2ATP + 2NADH

- 2ATP generated can directly be used for doing work or synthesis

24
Q

Products of glycolysis in aerobic conditions

A
  • 2 NADH are oxidized in mitochondria
  • free energy released is enough to synthesize 6 molecules of ATP by oxidative phosphorylation
  • pyruvate is catabolized further in mitochondria through PDH and citric acid cycle where all the carbon atoms are oxidized to CO2
  • free energy released is used in the synthesis of ATP, NADH and FADH2
25
Q

Effects of hormones in glycolysis

A
  • Insulin stimulate Hexokinase & Glucokinase by converting glucose to glu-6-PO4
  • Insulin stimulate Phosphofructokinase converting fru-6-PO4 to Fru-1,6 bisphosphate
  • Glucagon stimulate liver glu-6-PO4 by converting glu-6-PO4 to glucose & fru-1,6- bisphosphate.
  • Fru-1,6- bisphosphate is converted to fru-6-PO4
26
Q

Inhibitors

A
  • Iodoacetate inhibit Gly-3-PO4 dehydrogenase involved in gly-3-PO4 to 1,3-bisphosphoglycerate
  • Arsenate inhibit synthesis of ATP in the conversion of 1,3 bisphosphoglycerate to 3-phosphoglycerate.
  • Fluoride inhibit enolase in conversion of 2-Phosphoglycerate to phosphoglycerate
27
Q

Substrate limited regulation of glycolysis

A
  • When concentrations of reactant and products in the cell are near equilibrium, substrate availability drive reaction rate
28
Q

Enzyme limited regulation of glycolysis

A
  • When concentration of substrate and products are far away from the equilibrium, then it is activity of enzyme that decides rate of reaction
29
Q

3 steps in glycolysis that have enzymes which regulate the flux of glycolysis

A
  • hexokinase (HK)
  • phosphofructokinase (PFK)
  • pyruvate kinase
30
Q

Oxidation of pyruvate

A
  • the generation of an activated 2C fragment = the acetyl group of acetyl CoA
31
Q

Conversion of pyruvate to acetyl-CoA

A
  • Pyruvate enters the mitochondrial matrix
  • Undergoes oxidative decarboxylation
  • Pyruvate + NAD+ + CoA –>
    acetyl CoA + NADH + CO2
  • Sequence of reactions catalysed by pyruvate dehydrogenase complex (3 enzymes + 5 coenzymes)
  • A virtually irreversible reaction
32
Q

What 3 principal enzymes does pyruvate dehydrogenase complex contain?

A
  • E1: pyruvate dehydrogenase
  • E2: dihydrolipoamide transacetylase
  • E3: dihydrolipoamide dehydrogenase
33
Q

Coenzymes in PDH complex

A
  • thiamine pyrophosphate
  • lipoic acid
  • coenzyme A
  • flavin adenine dinucleotide
  • nicotinamide adenine dinucleotide
34
Q

Diet and PDH complex activity

A
  • maybe a rapid potential to affect PDC activity in muscle (and other tissues) by changing dietary energy sources
  • High fat diet lower activity vs high CHO diet in <5 days (“favours” fat oxidation)
  • May support CHO sparing during prolonged physical activity
  • Higher fat diets not endorsed by sports nutrition expert bodies
35
Q

Where does acetyl-CoA enter?

A
  • citric acid cycle, which has a central role in cell metabolism, to oxidise organic metabolites