GiM AfLs Flashcards
Shape of the mitochondrial genome?
Circular
The mitochondrial genome is a remnant of the ancestral chromosome of the symbiotic bacterium-like organism from which mitochondria are believed to have evolved. It replicates independently of the nuclear genome, and is also transmitted independently (cytoplasmic inheritance). When it comes to germline transmission, all of an embryo’s mitochondria derive from the oocyte (not the sperm), so that fathers cannot transmit mutations that lie within the small mitochondrial DNA circle. This is “non-nuclear” inheritance.
Okazaki fragments take part in which process to do with DNA?
Replication
Because the two strands of the DNA double helix run in opposite directions, only one of them can be copied continuously as the helix unwinds at the replication fork. The other must the made in chunks, each one initiated by an RNA primer. These Okazaki fragments must later be stitched (“ligated”) together.
A term used to describe how a genetic change manifests itself.
Phenotype
The O.E.D. definition of phenotype: “The sum total of the observable characteristics of an individual, regarded as the consequence of the interaction of the individual’s genotype with the environment; a variety of an organism distinguished by observable characteristics rather than underlying genetic features.”
This element is the most widespread class of retrotransposon in the human genome.
Alu
A large proportion of the genome comprises interspersed repeat elements that have dispersed around the genome by retrotransposition. Most of these “jumping” DNA elements are no longer active, but a small proportion are, so that new integration events occur every so often.
Vertical (parent to child) inheritance of a disorder is typically seen for autosomal ——– conditions.
Dominant
Autosomal dominant disorders are caused by heterozygous mutations, transmitted to offspring with a 50% probability.
This region of the chromosome separates the short and long arms.
Centromere
The centromere is seen down the microscope as a narrow region of the chromosome, where the sister chromatids are held together. This region is also crucial for attachment of the chromosome to the mitotic spindle (at the kinetochore).
Blocks of repetitive DNA sequence are found at the centromere and are required for its assembly, notably alphoid repeat sequences, which are unique to each chromosome and can be used as specific detection reagents.
Familial adenomatous _________ is an inherited condition that predisposes to bowel cancer.
Polyposis
Familial adenomatous polyposis (FAP) is also known as adenomatous polyposis coli (APC). It is an autosomal dominant condition in which thousands of benign polyps (adenomas) develop in the colon in early adult life. One or more of these eventually becomes a malignant colon cancer.
Parental consanguinity increases the risk of genetic diseases showing this inheritance pattern.
Recessive
Parental consanguinity increases the risk that a couple will both be carriers of the same recessive mutation. Rare recessive diseases therefore occur with increased frequency in such families.
This type of enzyme synthesizes DNA and RNA.
Polymerase
Polymerases are diverse in their biochemical properties, including whether they make DNA or RNA. They are, of course, vital biological molecules, but have also been co-opted by scientists for use as laboratory tools.
This term is used to refer to increasing severity of an inherited disease as it passes down successive generations.
Anticipation
Anticipation can be an “ascertainment artefact” (milder disease only noticed in a parent after referral of a more severely affected child) but has a real biological basis for some disorders.
A unit of chromatin, comprising about 200 bp of DNA wound around a histone core.
Nucleosome
Nucleosomes are the first level of assembly of the genome into chromatin. The histones are not just passive building blocks – they play an important role in gene regulation, through a large range of chemical modifications.
Ours consists of 46 chromosomes and was first correctly defined in 1956.
Karyotype
a. The chromosomal constitution of a cell (and hence of an individual, species, etc.) as determined by the number, size, shape, etc., of the chromosomes (usually, as observed at metaphase during cell division).
b. A systematized representation of the chromosomes of a cell or cells, esp. a photographic one.
Both these definitions of karyotype are from the O.E.D. and both are commonly used in genetics. The human karyotype was believed to have 48 chromosomes until correctly visualized for the first time.
An individual who is heterozygous for a recessive mutation.
Carrier
This is a somewhat imprecise term, but one that is quite widely used. The “carrier frequency” for some of the less rare recessive diseases may be quite high, raising the question of whether screening of individuals from the general population is justified or desirable.
That part of a gene which is excised from the RNA transcript by splicing.
Intron
Exons, which include the protein-coding part of the genome, are defined as the parts of the gene that end up in the mature spliced RNA product. They comprise about 2% of our DNA. Because most disease-causing mutations occur in exons, a popular “short-cut” version of genome analysis consists of sequencing all the exons—a so-called exome analysis. Introns separate the exons and must be precisely excised to allow “reconstruction” of the protein-coding mRNA.
The Philadelphia chromosome is characteristic of chronic ___________ leukaemia.
Myelogenous
The Philadelphia chromosome is a translocation between chromosomes 9 and 22: t(9;22)(q34;q11). It is found in the leukaemic cells of chronic myelogenous leukaemia (CML) and results in the production of an abnormal fusion protein BCR-ABL, due to the joining of the ABL and BCR genes on those two chromosomes. The BCR-ABL protein can be targeted with specific tyrosine kinase inhibitors that are effective in the treatment of CML.
An evolutionary remnant, in the form of a DNA sequence that resembles a gene elsewhere in the genome, but has mutations that appear to render it inactive.
Pseudogene
Pseudogenes have arisen during evolution by gene duplication, but have subsequently mutated and lost their functions. They are a normal widespread feature of the human genome. Because some of them are extremely similar in sequence to their functional siblings, they can interfere with laboratory analysis aimed at examining the functional gene.
A genetic change.
Mutation
Any genetic change is, by definition, a mutation. However, sometimes, the word is used in a way that implies that the change in question also has a phenotypic effect (particularly a harmful one).
An individual version or genetic variant at a particular locus.
Allele
The O.E.D. definition is nice and clear: “Each of two or more alternative forms of a gene that arise by mutation and which may be found in the same position on a homologous chromosome.” This is a “new word” invented by geneticists, but if you understand what is meant by it, and use it correctly, you will be much better placed to grasp any discussion dealing with genetic variation—which itself is central to why genetics affects human health.
What term describes a 45,XX,-21 chromosome makeup?
Monosomy
Autosomal monosomies are not compatible with life, but may be detected in spontaneous abortions. Monosomies may also develop as acquired abnormalities in tumour cells.
Advanced ** age is a major risk factor for numerical chromosome abnormalities
Maternal
The MYCN oncogene is characteristically amplified in this childhood tumour
Neuroblastoma
An example of somatic chromosome abnormality in cancer. Another common example is amplification of the growth factor receptor ERBB2 in breast cancer. These acquired genetic changes are important indicators of prognosis.
Cytogenetic technique that uses a DNA probe to examine a single locus
Fluorescent in situ hybridization (FISH)
Chromosomal inversion with both breakpoints on the same arm
Paracentric
pericentric = around the centromere (cf. pericardial = around the heart)
paracentric = beside the centromere (cf. parathyroid = beside the thyroid)
A type of translocation in which two acrocentric chromosomes are fused
Robertsonian
The vestigial short arms of acrocentric chromosomes differ in content from other chromosome arms. They contain no indispensible single-copy genes. What then is on the short arms of acrocentric chromosomes? (Look it up.)