Genetics CH 17, 18, 20 Flashcards
Which of the following would be an example of a cis acting eukaryotic gene regulatory element?
Question 1 Answer
a.
RNA polymerase
b.
metallothionein
c.
general transcription factors
d.
TATA binding protein
e.
enhancer
enhancer
Two modular elements that appear as consensus sequences upstream from RNA polymerase II transcription start sites are ________.
Question 2 Answer
a.
microsatellites and transposons
b.
rDNA and nucleolar organizers
c.
TATA and CAAT
d.
TTAA and CCTT
e.
enhancers and telomeres
TATA and CAAT
The GAL gene system in yeast is used to metabolize galactose. In the presence of galactose, the GAL genes are expressed; however, in the absence of galactose, the GAL genes are repressed. A yeast mutant is discovered that continuously expresses the GAL genes in the presence or absence of galactose. Which GAL gene is likely mutated?
Question 3 Answer
a.
GAL4
b.
GAL180
c.
GAL3
d.
GAL1
e.
GAL 10
GAL180
In a particular organism, there are two similar genes called YFG1 and YFG2. YFG1 is expressed in the liver and not in the pancreas, and YFG2 is expressed in the pancreas but not the liver. Neither YFG1 nor YFG2 is expressed in the heart. Based on these observations, which of the following is most true?
Question 4 Answer
a.
The YFG1 gene isolated from the pancreas and the YFG2 gene isolated from the liver would be DNase I sensitive.
b.
The YFG1 gene isolated from the liver and YFG2 gene isolated from the pancreas would be DNase I sensitive.
c.
Both YFG1 and YFG2 genes isolated from the heart would be DNase I sensitive.
d.
Both YFG1 and YFG2 genes isolated from any tissue (the liver, the pancreas, and the heart) would be DNase I sensitive.
e.
Neither YFG1 nor YFG2 isolated from any tissue (the liver, the pancreas, and the heart) would be DNase I sensitive.
Both YFG1 and YFG2 genes isolated from the heart would be DNase I sensitive.
UASs (upstream activating sequences) are DNase hypersensitive. This means that ________.
Question 5 Answer
a.
a UAS is constitutively open
b.
more than one strand of DNA exists in each UAS
c.
each UAS is likely to be single stranded
d.
each UAS has more histone-binding sites than non-UAS sites
e.
any given UAS is composed of a double-stranded site with a bound repressor
a UAS is constitutively open
Which of the following is true about histone acetyltransferase (HAT)?
Question 6 Answer
a.
HATs will remove acetyl groups from histone proteins.
b.
HATs will add acetyl groups to DNA.
c.
HATs will make the chromatin more compacted and less available to transcription regulatory proteins.
d.
HATs are usually linked to increasing gene expression.
e.
HATs have an overall effect of increasing the positive charges on DNA.
HATs are usually linked to increasing gene expression.
The ENCODE Project’s goal was to identify all functional DNA sequences within the human genome. Which of the following is a finding from ENCODE?
Question 7 Answer
a.
ENCODE determined that approximately 15% of the human genome codes for a protein.
b.
ENCODE determined that approximately 25% of the human genome has some sort of biochemical function.
c.
ENCODE was able to classify that a large part of the human genome is “Junk DNA.”
d.
ENCODE was able to determine that each enhancer exerts its regulatory function on only a single gene.
e.
ENCODE was able to determine that 75% of the genome is transcribed in at least one cell type.
ENCODE was able to determine that 75% of the genome is transcribed in at least one cell type.
The pre-initiation complex (PIC) contains several proteins. What would be the direct consequence be if PIC failed to form?
Question 8 Answer
a.
Replication would not be initiated.
b.
Translation would not be initiated.
c.
Transcription would not be initiated.
d.
mRNA splicing would not be initiated.
e.
Protein would not fold properly.
Transcription would not be initiated
A regulatory sequence of DNA that is 10,000 base pairs away from the gene it regulates is mutated. The result is that the gene being regulated is now expressed at a higher rate compared to when this regulatory sequence was not mutated. What would this sequence of DNA best be called?
Question 9 Answer
a.
insulator
b.
activator protein
c.
enhancer
d.
silencer
e.
zinc finger motif
silencer
The nuclear regions that contain RNA polymerase and transcription regulatory molecules that help compartmentalize eukaryotic regulation are called ________.
Question 10 Answer
a.
chromosome territories
b.
interchromatin compartments
c.
transcription factories
d.
nucleosomes
e.
histones
transcription factories
If a promoter region is mutated in such a way that it can no longer be methylated, what would the most likely effect be?
Question 11 Answer
a.
The gene linked to that promoter would be over expressed.
b.
The gene linked to that promoter would not undergo replication.
c.
The gene linked to the promoter would be under expressed.
d.
The gene linked to the promoter would be expressed at regular levels.
e.
The gene linked to the promoter would still be expressed, but the protein should contain different amino acids.
The gene linked to that promoter would be over expressed.
Which of the following clusters of terms apply when addressing enhancers or silencers as elements associated with eukaryotic genetic regulation?
Question 12 Answer
a.
cis-acting, variable orientation, variable position
b.
trans-acting, fixed position, fixed orientation
c.
cis-acting, fixed position, fixed orientation
d.
cis-acting, variable position, fixed orientation
e.
trans- and cis-acting, variable position
cis-acting, variable orientation, variable position
Considering the location of genes in the interphase nucleus, certain chromosomal territories appear to exist. Specifically, ________.
Question 13 Answer
a.
each chromosome appears to occupy a discrete domain
b.
gene-poor regions of chromosomes are located outside the nucleus, whereas gene-rich regions are located inside the nucleus
c.
even-numbered chromosomes are located in the interior of the nucleus, whereas odd-numbered chromosomes are located peripherally
d.
large chromosomes are more likely to be located in the center of the nucleus
e.
small chromosomes are more likely to be located in the center of the nucleus
each chromosome appears to occupy a discrete domain
What is the general position of the consensus sequence called the GC box? What is its sequence?
Question 14 Answer
a.
promoter; CAAT
b.
promoter; GGGCGG
c.
terminator; CAAT
d.
terminator; GGGCGG
e.
attenuator; GGGCGG
promoter; GGGCGG
What type of DNA sequence is a repressor protein be expected to bind?
Question 15 Answer
a.
silencer
b.
enhancer
c.
insulator
d.
TATA Box
e.
GC Box
silencer
DNA is methylated on which nucleotides?
Question 16 Answer
a.
guanine
b.
cytosine
c.
adenine
d.
thymine
e.
uracil
cytosine
Gene regulation in eukaryotes is more complicated than bacterial gene regulation. Which of the following describes a gene regulation event that occurs in eukaryotes but not in bacteria?
Question 17 Answer
a.
In eukaryotes, transcription and translation occur in the same cellular compartment.
b.
In eukaryotes, mRNA does not need to be modified.
c.
In eukaryotes, histones must be added or removed to regulate gene expression.
d.
In eukaryotes, mRNA degrades quickly compared to bacterial mRNA that is more stable.
e.
In eukaryotes, proteins are post-translationally modified, whereas bacterial proteins are never post-translationally modified.
In eukaryotes, histones must be added or removed to regulate gene expression.
Which of the following is a functional domain that is found in eukaryotic transcription factors and bacteria?
Question 18 Answer
a.
basic leucine zipper motif
b.
zinc finger motif
c.
helix-turn-helix motif
d.
basic leucine zipper and zinc finger motifs
e.
basic leucine zipper, zinc finger, and helix-turn-helix motifs
helix-turn-helix motif
Which process seems to be the most similar between eukaryotic and prokaryotic genetic regulations?
Question 19 Answer
a.
transcriptional regulation
b.
RNA splicing regulation
c.
intron/exon shuffling
d.
5’-capping regulation
e.
poly(A) tail addition
transcriptional regulation
In what way do upstream activator sequences (UASs), regulatory sequences in yeast, differ from enhancers and silencers?
Question 20 Answer
a.
UASs function only downstream.
b.
UASs function only upstream.
c.
Enhancers function only downstream.
d.
UASs function in the middle of transcription units.
e.
UASs can function only in the 5’→ 3’ direction.
UASs function only upstream.
What is deadenylation?
Question 1 Answer
a.
Addition of methyl cap
b.
Poly-A tail elongation
c.
Shortening of poly-A tail
d.
Exon shuffling
Shortening of poly-A tail
Which disorder is caused by splicing defects?
Question 2 Answer
a.
Diabetes
b.
Influenza
c.
Alzheimer’s
d.
Myotonic dystrophy
Myotonic dystrophy
What determines steady-state mRNA level?
Question 3 Answer
a.
DNA methylation
b.
Translation efficiency
c.
Transcription and degradation rates
d.
Polyadenylation only
Transcription and degradation rates
What happens if miRNA imperfectly pairs with mRNA?
Question 4 Answer
a.
mRNA is cleaved
b.
Translation is inhibited
c.
Transcription increases
d.
Ribosomes degrade
Translation is inhibited