Genetics/Biochem Flashcards

1
Q

Co-dominance + Examples

A

Both alleles contribute to the phenotype of heterozygote

e.g. Blood groups A, B, AB and alpha 1- antitrypsin deficiency

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2
Q

Variable Expressivity

A

Phenotype varies among individuals with the same Genotype.

e.g 2 patients with NF-1 (chromosome 17) have varying dz severity

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3
Q

Incomplete penetrance

A

not all individuals with a mutant genotype show phenotype.

e.g BRCA 1 carriers do not always develop Breast Cancer

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4
Q

Pleiotropy

A

One gene contributes to multiple phenotypic effects.

e.g untreated PKU, manifests with light skin, musty odor. and intellectual disability.

1 gene = multiple symptoms

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5
Q

Anticipation + name 4 dz that shows and expansion

A

Increased severity or earlier onset of disease in succeeding generations….

Trinucleotide repeat diseases:

Huntingtons Dz (CAG expansion on chr. 4)
Fragile X syndrome (CGG expansion, X-linked)
Friedrich Ataxia (GAA expansion on Chr. 9)
Myotonic Dystrophy ( Aut. Dom CTG)
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6
Q

Loss of heterozygosity

A

patient inherits or develops a mutation in a tumor supressor gene the complementary allele must be deleted/mutated for cancer to develop. (2 hit hypothesis of TSG)
Retinoblastoma, HNPCC, Li-fraumeni

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7
Q

Dominant Negative Mutation

A

Dominant effect - heterozygote produces a nonfunctional altered protein that also prevents the normal gene from functioning.

e.g mutant transcription factor can still bind DNA preventing wild type from binding.

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8
Q

Linkage Disequilibrium

A

Tendency for certain alleles at 2 linked loci to occur together. more or less often than expected by chance.

measured in a population no family.

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9
Q

Mosaicism

Associated Dz and symptoms

A

Presence of genetically distinct cell lines in the same individual.

Somatic mosaicism- Mutation arises from mitotic errors after fertilization and propagates through multiple organs/tissues.

Gonadal Mosaicism - mutation in only egg or sperm cells.

McCune-Albright Syndrome- due to mutation affecting G-protein signaling

  • unilateral cafe au-lait
  • polyostotic fibrous dyslasia,
  • precocious puberty
  • endocrine abnormalities
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10
Q

Locus Heterogeneity

Example of Associated Dz

A

Mutations at different loci can produce similar phenotype.
Different loci = similar phenotype

Albinism

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11
Q

Allelic Heterogeneity

Example of Associated Dz

A

different mutations in the same locus produce same phenotype.

Different mutation + same loci = same disease

B- Thalassemia

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12
Q

Heteroplasmy

A

Presence of both normal and mutated mtDNA resulting in variable expression in mitochondrially inherited dz.

(mosaicism of mtDNA)

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13
Q

Uniparental Disomy and associated disorder.

A
  • offspring receives 2 copies from 1 parent and none from the other.
  • Heterodisomy (heterozygous) = meiosis 1 error
  • Isodisomy (homozygous) = meiosis 2 error or
    postzygotic duplication of 1 and loss of the other.

Consider UPD in a patient manifesting a recessive disorder when only 1 parent is heterozygote
(other is Homo dom)

25% of prader willi is UPD

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14
Q

Imprinting

A

at some loci - only 1 allele is active and other is inactive (imprinted via methylation)

Prader willi and Angelman syndrome are due to mutation or deletion of Chr. 15

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15
Q

Southern Blot

A

DNA technique.
1. DNA sample is enzymatically cleaved into pieces then separated by gel electrophoresis,
then transferred to a filter.

  1. Filter is exposed to radio-labeled DNA probe that recognizes and anneals to its complementary strand
  2. Double stranded, labeled piece of DNA is visualized when filter is exposed to film.
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16
Q

Northern Blot

A

RNA technique

  1. Similar to Southern blot, but RNA is electrophoresed.

Useful for studying mRNA levels which is reflective of Gene expression.

17
Q

Western blot

A

Sample protein is separated via Gel electrophoresis then transferred to a membrane.

Labeled antibody is used to bind to relevant protein.

Confirmatory test for HIV after +ELISA

18
Q

Southwestern Blot

A

Identifies DNA binding proteins. Like transcription factors. using labeled oligonucleotide probes

19
Q

PCR

A

procedure used to amplify a desired fragment of DNA.
Diagnostic tool.

  1. dsDNA + DNA primer + nucleotides mixed
  2. DNA is denatured
    - Heating to 95 deg. C- this separates the strands
  3. Annealing
    - During cooling to 55 deg. C excess DNA primers anneal to a specific sequence on each strand to be amplified.
  4. Elongation
    - Heat Stable DNA polymerase at 72 deg. C replicates the DNA sequences following each primer.
20
Q

Flow Cytometry

A

Technique to assess size granularity and protein expansion. Immunophenotype of individual cells.

Used in hematologic abnormalities.

Cells are tagged with antibodies specific to surface or IC proteins. Analyzed 1 cell at a time by focusing laser and measuring light scatter.

21
Q

Microarrays

A

Thousands of Nucleic acid sequences are arranged on grids.
DNA or RNA probes are hybridized to the chip and scanner measures complimentary binding.

Able to detect Single nucleotide polymorphisms (SNPs), Copy number variations (CNV)
- genetic testing, forensics, cancer mutations.

22
Q

Cre-lox system

A

inducibly manipulate genes at specific developmental points - to study gene that causes embryonic death

23
Q

RNA interference

A

dsRNA is synthesized that is complementary to mRNA sequence of interest, dsRNA insertion and separates which promotes degradation of target mRNA.

24
Q

Autosomal Dominant Diseases

A

Marfans Spherocytosis
Osteogeneisis imperfecta Tuberous sclerosis
Cholesterolemia (type II) Adenosis Polyposis
Huntingtons/VHL NF1/NF2
ADPKD/achondroplasia(Chr.4) Dystonia Myotonic

25
Q

X-Linked Recessive Disorders

A
Alport (can be Xlinked Dominant)
Brutons Agammagolobulinemia
CGD
Duchenne (+becker)
Ehlers-Danlos V
Fabrys
G6PD deficiency
Hemophilia A+B/Hunters
...
Lesch-Nyhan
OTC deficiency/Ocular Albinism
Wiskott Aldrich
26
Q

Regulation of Cell Cycle

A

CDKs- constitutive and inactive

Cyclins - regulatory proteins taht control cell cycle events
Activate CDKs

Cyclin-CDK complexes- Phosphorylate other proteins to coordinate cell cycle progression.

Tumor supressors:
-p53 induces p21 which inhibits CDKs —-> hypophosphorylation (activation) of RB.

  • Hypophosphorylated RB binds and inactivates E2F transcription factor —> inhibits G1-S progression.
  • Mutations in these lead to Li-fraumeni Syndrome.
27
Q

Signal Recognition Particle (SRP)

A

cytosolic ribonucleoprotein that traffcis proteins from the ribosome to the RER.

Absent–> proteins will accumulate in the cytoplasm

28
Q

COPI

A

Vesicular trafficking protein

Golgi—> Golgi (retrograde flow)

Cis-golgi —-> ER

(cis glogi is facing the ER)

29
Q

COPII

A

vesicular trafficking protein

ER—-> CiS golgi

(cis-gogi is facing the ER)

30
Q

Clathrin

A

Vesicular Trafficking protein

Trans- Golgi —-> lysosomes

plasma membrane—-> endosomes (receptor mediated endocytosis [e.g LDL receptor activity])

31
Q

Peroxisome

A

organelle involved in the catabolization of VLCFA by Beta oxidation, branched chain fatty acids, amino acids and ethanol

32
Q

Microfilaments

A

Cytoskeletal filament
– function in muscle contraction and cytokinesis

Examples Actin and Microvilli

33
Q

Intermediate Filaments

A

Maintain cell structure

Examples:
Vimentin, desmin, cytokeratin, laminins, glial fibrillary acid proteins, Neurofilaments.

34
Q

Microtubules

A

Cytoskeletal filament
Movement and Cell division

Examples:
Cilia, falgella, mitotic spindle, axonal trafficking, centrioles

Structure:
cylindrical outer structures composed of a helical array of polymerized heterodimers of alpha and beta tubulin.

Each dimer is bound to GTP

Also involved in slow axoplasmic transport in neurons (microtubles)

Dynein —-> retrograde to microtubule (+) —> ( - )
Kinesin —-> Anterograde to microtubule (-) —>(+)

Drugs that act on Microtubules:

  • Griseofulvin
  • Paclitaxel
  • Vinblastine and Vincristine
  • Colchicine
  • Mebendazole
35
Q

Desmin Stain

A

Muscle,

stains muscle tumors like Rhabdomyosarcoma

36
Q

Vimentin Stain

A

Mesenchymal Tissue (fibroblats, endothelial cells, macrophages)

Used to stain mesenchymal tumors (sarcomas)
endometrial carcinoma , renal cell carcinoma, meningiomas

37
Q

Cytokeratin Stain

A

Epithelial cells- squamos cell carcinoma

38
Q

Kartagener Syndrome

A

immotile cilia due to a dynein arm defect.

Male and female infertility, increased risk for ectopic,
can cause bronchiectasis, situs inversus, and recurrent sinusitis.