GENETICS Flashcards

1
Q

Gene

A

a section of DNA that codes for a particular protein, heritable factor that controls specific characteristics

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2
Q

Allele:

A

Allele: an alternative version of the same gene

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3
Q

Chromosome

A

Chromosome: wound up DNA contained in the nucleus, made up of protein and DNA

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4
Q

Gene Locus:

A

Gene Locus: specific position of a gene on a chromosome

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5
Q

Genotype:

A

Genotype: the symbolic representation of the pair of alleles possessed by an organism

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6
Q

Phenotype:

A

Phenotype: The characteristics/traits of an organism expressed by a gene

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7
Q

Dominant Allele:

A

Dominant Allele: an allele that has the same effect on the phenotype, regardless with paired with the same allele or a different one (ALWAYS EXPRESSED IN PHENOTYPE)

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8
Q

Recessive Allele:

A

Recessive Allele: an allele that has an effect on the phenotype only when in homozygous state

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9
Q

Co-dominant Allele:

A

Co-dominant Allele: pair of alleles that both are expressed in the phenotype

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10
Q

Homozygous:

A

Homozygous: having two identical alleles of a gene

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11
Q

Heterozygous

A

Heterozygous: having two different alleles of a gene

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12
Q

Carrier:

A

Carrier: An individual with a recessive allele of a gene that does not affect the phenotype

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13
Q

Testcross:

A

Testcross: testing a suspected heterozygote by crossing with a known homozygous recessive
Tt x tt

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14
Q

Gregor Mendel’s Law of Inheritance

A
Gregor Mendel (1822-1884) created the three laws of inheritance 
Law of dominance → certain features dominant over others
Law of segregation → homologous pairs separate during genetic formation 
Law of independent assortment → maternal + paternal chromosomes in homologous pairs line up randomly at the equator
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15
Q

Law of dominance

A

Law of dominance → certain features dominant over others
- dominant allele completely masks the effects of a recessive allele. A dominant allele produces the same phenotype in heterozygotes and in homozygotes

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16
Q

Law of segregation

A

Law of segregation → homologous pairs separate during genetic formation

  • in diploid organisms, chromosome pairs (And their alleles) are separated into individual gametes (egg or sperm) to transmit genetic information to offspring
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17
Q

Law of independent assortment

A

Law of independent assortment → maternal + paternal chromosomes in homologous pairs line up randomly at the equator

  • Alleles on different chromosomes are distributed randomly into gametes
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18
Q

Genetic code:

A

Genetic code: consists of A T C G, in CODONs (triplets)

  • its universal
  • codes for proteins
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19
Q

Cystic Fibrosis

A

Cystic Fibrosis is the mutation of the CFTR gene, which causes people to produce excessive mucus in organs (respiratory and digestive systems)

  • deletion mutation: three nucleotides, ATC, are deleted. Therefore the amino acid phenylalanine is deleted.

effect:
The gene, ATC, codes for the protein pump which pumps salt through membranes. The protein pump’s shape is changed so it no longer functions. Where salt goes water follows, if salt can’t get through membranes neither will water for the most part. This heavily affects internal organs and the digestive system since water cannot get to them and they are not lubricated enough. When water is not carried into these areas food scrapes through the organs and thick mucus builds up in the trachea, resulting in a constant cough.

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20
Q

MUTATIONS:

A

MUTATIONS:
A mutation is a random, rare change in genetic material

Types:
Deletion
Substitution
Insertion/Addition
Can occur during DNA replication
Can have negative AND positive effects on an organism's survival
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21
Q

Beneficial Mutations:

A

Beneficial Mutations: a mutation that provides an individual or species with a better chance for survival

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22
Q

example of a Beneficial Mutations:

A
  • LRP5 gene helps immune system cells make a certain protein that acts as a receptor on their surface, people with a mutation in the LRP5 gene cannot make this receptor protein (that is used by HIV to infect cells) on their immune system, therefore HIV doesn’t affect them
    When a mutation is passed on: it becomes a new allele
  • ANOTHER beneficial mutation: gene to help digestion; allowing for people to become lactose-tolerant, as the body can now break down the lactose from cow’s milk (agricultural society)
  • sickle cell anemia CARRIERS
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23
Q

SICKLE CELL ANEMIA

A

SICKLE CELL ANEMIA: base substitution mutation
Mutation is found in the gene that codes for haemoglobin in red blood cells

Mutation causes shape in haemoglobin, therefore change in shape of the RBC’s, causing them to look like a ‘sickle’
GAG mutated to GTG, VALINE is added to the polypeptide chain instead of GLUTAMIC ACID

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24
Q

symptoms and effect of sickle cell anemia

A

SYMPTOMS:
Fatigue
Weakness
Shortness of breath

EFFECTS:
Oxygen cannot be carried properly by the mutated RBC
Haemoglobin crystallizes (hardens/stiffens) RBC, making them less flexible; they become stuck in capillaries so blood flow is slowed/blocked
ADVANTAGES:
CARRIERS are immune to malaria, as the parasite dies in the cells with carry the sickle cell anemia gene mutatio

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THE HUMAN GENOME PROJECT:
catalog the entire sequence of DNA for a human being (started MAY 2000)
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how does the human genome project catalog dna?
DNA Fragmentation, primer sequence is added to start process DNA polymerase attaches to one copy of the first fragment and adds free nucleotides Strands are separated by size during gel electrophoresis
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Gel Electrophoresis
Gel electrophoresis is a way of comparing two or more samples of DNA Separation of the DNA fragments are based on their size and charge In a gel electrophoresis lab a mixture of restriction enzymes, DNA samples and loading dye (to indicate where the fragments are and to weigh down the mixture) are inserted into their respective wells in an agarose gel (this mixture is measured with a micropipette which inserts indicated amounts into microcentrifuge tubes, the mixture is then mixed and collected to the bottom of the microcentrifuge tube using a pulse centrifuge). The electrophoresis chamber is then connected to a power supply and since DNA is slightly negatively charged it begins moving across the gel towards the positive electrode.
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USING DNA TO MAKE MEDICINE:
Find beneficial molecules that are produced naturally in healthy people Find out which gene controls the synthesis of a desirable molecules Copy that gene and create therapeutic proteins
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CHROMOSOMES in PROKARYOTES:
Contain circular strand of DNA and reproduce through binary fission, has only one chromosome, whereas when two parents are involved (like in eukaryotes), there are pairs CONTAIN plasmids which can be used for genetic engineering
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PLASMIDS
PLASMIDS; not connected to main bacterial chromosome, replicate independently, and can travel through different cells, can help the cell adapt (e.g. become immune to antibiotics): GENETIC ENGINEERING
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EUKARYOTES CHROMOSOMES
DNA is in the form of chromosomes, which carry the information needed for the cell to exist When the cell is not dividing, the chromosomes are not visible, as they are in the form of chromatin
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Chromatin
CHROMATIN: strands of DNA wrapped around histones
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Nucleosomes
NUCLEOSOME: two molecules of each of the four different histones, DNA is wrapped around eight of these THEY are attracted because histones are positively charged (DNA is negative) WHY HISTONES? Because when DNA is wrapped around it, transcription enzymes cannot access it
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HOMOLOGOUS CHROMOSOMES:
HUMANS: 46 chromosomes grouped into 23 pairs Homologous: similar in shape and size, carry the same genes TWO of each chromosome; one paternal and one maternal
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Diploid and Haploid chromosomes?
DIPLOID: nucleus has homologous chromosome with 46 chromosomes (2n) HAPLOID: half the normal amount, 23 chromosomes in humans (n)
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Karyogram
Karyogram: representation of the chromosomes found in a cell by their size and shape
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Karyotype
Karyotype: specific number and appearance of the chromosomes in a person's cell All chromosomes are identical but the 23rd (sex) chromosomes, which are the X and Y ones
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Sex Determination:
``` 23rd pair are the sex chromosome: determine the sex of a person Non-sex cells: AUTOSOMES FEMALE: XX MALE: XY 50/50 chance of being male or female ```
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AUTORADIOGRAPHY:
Technique in which radiation from a substance is captured on photographic film or by a camera sensor Autoradiograms are exposed to radioactive particles
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CAIRNS TECHNIQUE:
CAIRNS TECHNIQUE: inject radioactive material into DNA samples known as radio markers THYMIDINE is replaced with a radioactive isotope (the hydrogen in thymidine is replaced)
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MEIOSIS;
Gamete: sex cell Reduction division (2 sets) Meiosis is the creation of genetically different gametes through two cell divisions in Meiosis 2n diploid cells (23x2) create four different haploid cells Males - sperm: Spermatogenesis (creates 4 sperm)
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stages of Meiosis:
Meosis I and Meisosis II
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Interphase
During interphase the DNA in the nucleus is loose in the form of chromatin. - DNA replication + cell growth + organelle division
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Prophase I
- chromosomes become visible as the DNA becomes more compact - homologous chromosomes; attract and pair up to each other (maternal and paternal pairs) - crossing over occurs - spingle fibres made from microtubules form
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Metaphase I
- During this stage the homologous pairs line up at the equator (center) of the cell. The centrioles begin to form spindle fibers. - nuclear membrane disintegrates RANDOM orientation occurs and INDEPEDENT ASSORTMENT
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Anaphase I
Anaphase I: During anaphase I the homologous pairs are separated by the spindle fibers to opposite poles. They are now just chromosomes existing as sister chromatids.
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Telophase I:
Telophase I: In this phase the spindle fibers disintegrate and a nuclear envelope begins forming around both chromosomes on either pole. The cell then has two nuclei. A cell membrane begins to split the cytoplasm. (CYTOKENSIS)
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prophase II
Prophase II: The nuclear membrane disintegrates and the DNA is supercoiled into chromosomes existing as sister chromatids. Centrioles move to either pole.
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metaphse II
Metaphase II: | During Metaphase II the chromosomes existing as sister chromatids line up at the equator. Spindle fibers begin to form.
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anaphase II
Anaphase II: Spindle fibers pull apart the chromosomes existing as sister chromatids, splitting them at the centromeres. They now exist as chromosomes - because of random orientation, chromatids pulled towards either of the newly formed daughter cells
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telophase II
Telophase II: During Telophase II a nuclear envelope forms around the chromosomes on either pole. A cell membrane begins to split the nucleus.
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cytokensis
Cytokinesis: | The cytoplasm is split and 4 haploid n gametes are formed.
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Meiosis: Sources of Variation
- crossing over - random orientation - independent assortment - random fertliziation
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crossing over
homologous pairs cross over while supercoiling | Chiasmata (point of crossing over + exchange of DNA)
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Random orietnation
Random assortment of maternal chromosomes and paternal chromosomes on either side of the equator
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Indepdent assortment
maternal + paternal chromosomes in homologous pairs line up randomly at the equator - Alleles on different chromosomes are distributed randomly into gametes (UNLINKED GENES)
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random fertlization
3rd Source - Random Fertilization | Any random sperm will fertilize any random ovum
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Meiosis: Errors
Nondisjunction - when a pair of homologous chromosomes do not separate during Anaphase I of meiosis (failure to separate) [you don't need to know this probably but it can also occur with sister chromatids in anaphase II]
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meisosis error examples
trisomy 21 ; down syndrome ;extra chromosome klinefelter’s syndrome ;extra sex chromosome (xxy) one less sex chromosome (xo); turner’s syndrome trisomy 13; extra chromosome 14
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Example of multiple alleles
``` BLOOD TYPE Example of multiple alleles Io IA IB Genotypes: A, B, AB, O ```
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Autosomal Genetic Diseases:
``` Caused by recessive alleles, found on one of the 22 pairs of chromosomes (not sex cells) Examples: Albinism Cystic fibrosis Sickle cell anemia ```
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Sex Linked Diseases
Y chromosome has fewer genes than the X as it is shorter SEX LINKAGE: any genetic trait whose gene has its locus on an X or Y chromosome is sex-linked Often traits attached to a sex chromosome affect one sex more than another EXAMPLES: Color blindness Haemophilia
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Why are men more susceptible to sex linked diseases?
CARRIERS: Sex linked recessive alleles are rare Women have two X chromosomes, so usually the dominant gene takes over Men are more susceptible because they have only one X
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CAUSES FOR CANCER, MUTATIONS & GENETIC DISEASES:
Exposure to radiation or carcinogens Mutagenic chemicals RADIATION: when radiation hits a DNA molecule it can knock one or more base pairs out of place, therefore modifying the genetic code + it can cause radiation burns DNA mutation can lead to cancer SOURCES OF RADIATION: nuclear bombs and nuclear power plants INCIDENTS: Hiroshima/Nagasaki and the Chernobyl/Fukushima Power Plant Leak
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GENETIC MODIFICATION AND BIOTECHNOLOGY:
``` Copying DNA in a lab (PCR: polymerase chain reaction) DNA Profiling/Fingerprinting Mapping DNA (Human Genome Project) Gene transfer Cloning cells and animals ```
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POLYMERASE CHAIN REACTION
A lab technique using a thermocycler that takes a small quantity of DNA and copies all the nucleic acids in it to make millions of copies of DNA. Artificial polymerase enzyme used in labs under perfect conditions in order to replicate DNA samples. Amplifies a single or several fragments of DNA. DNA POLYMERASE used
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DNA PROFILING
DNA PROFILING Can be used in paternity suits or crime investigations Gel electrophoresis and PCR are used to compare the collected DNA samples with one another DNA is separated by size and charge, so identification can happen ONLY PEOPLE that have identical fingerprints: TWINS
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GENE TRANSFER
The technique of taking a gene out of one organism and placing it into another organism Why is this possible? BECAUSE THE GENETIC CODE IS UNIVERSAL Example: Bt Corn which has been genetically engineered to produce toxins that kill the bugs that attack it
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PROCESS of gene transfer
CUTTING, COPYING and PASTING GENES Cutting; ‘Scissors’ (restriction enzymes) are used to find and recognized a specific sequence of a DNA molecule and ‘cut’ there; Gene is released DNA Ligase recognized the parts of the base sequences that are supposed to be linked together and attaches them COPYING: Host cell needed E.Coli (bacteria) is used Is possible due to plasmids, to copy a gene, it is glued to a plasmid PASTING: An open plasmid: gene splicing (pasted using DNA Ligase): plasmid now called a recombinant plasmid Plasmid is inserted into host, the host can now express the gene WHEN USED? TO CREATE INSULIN FOR DIABETICS
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GENETICALLY MODIFIED ORGANISMS;
A GMO is one which has an an artificial genetic change | Used to be more competitive in food production or to teach bacteria to produce proteins
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Transgenic plants:
Genes removed/added to optimize the plant | Commercial use: make Tomato’s more resistant to frost and delay their ripening/rotting
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Transgenic animals
Get animals to produce a substance that can be used in medicine E.g. help haemophiliacs produce blood clotting factor (IX) Sheep are given the genetic information for milk production, so that it will have the protein in its milk
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Natural Method of Cloning:
-Nature invented it before humans E.g. plants can send out structures to allow a new plant to grow close to the old one, which is genetically identical In animals, HYDRA (sea jelly) can clone itself, however also have sexual reproduction
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ANIMALS CLONED FROM EMBRYOS
Clone: genetically identical organisms/cells from a parental cell VITRO fertilization can be used to grow two identical embryos TWINS: a type of clone, if an embryo split into two
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ANIMALS CLONED FROM ADULT CELLS:
DOLLY the sheep in 1996 was the first clone whose genetic material did not originate from an egg cell HOW? A donor sheep’s somatic cell was taken and cultured Nucleus was removed Using electrical current, the egg cell and the nucleus from the somatic cell were fused together A new cell developed in vitro in a similar way to a zygote (formation of embryo) Embryo was placed in the womb of a surrogate mother Dolly developed and was born! KNOWN AS SOMATIC CELL NUCLEAR TRANSFER
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CLONING UNDIFFERENTIATED CELLS
When just cells are copied THERAPEUTIC CLONING: using stem cells to create tissues and organs Using embryonic stem cells
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ethical issues with stem cell cloning
Embryo used and ‘destroyed’ for stem cell research Skin to repair a serious burn, new heart muscle to repair an ailing heart, new kidney tissue to rebuild a failing kidney
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obtaining cells for karyotyping
- amniocentisis; hypodermic needle used to extract amniontic fluid from develping baby - removing cells from chorionic villus; cells are taken from placenta finger like projections on uterus wall