genetics Flashcards
how many pairs of chromosomes does a human have?
structure
23
short arm (p) & long arm (q)
joined at centromere
what is a chromosome called when:
i) arms are same length
ii) one arm is longer than other
iii) centromere is situated at top of chromosome
i) metacentric
ii) submetacentric
iii) acrocentric
name given to:
i) 1st 22 pairs of chromosomes
ii) 23 pair of chromosomes
i) autosomes
ii) sex chromosomes
what is a gene?
How many genes are there in human genome?
a specific sequence of DNA that carries the instructions for the construction of a protein
approx 20,000
what is meiosis?
what are the 2 division cycles in meiosis called?
division of germ cells to produce ova or sperm
meiosis I
meiosis II
what happens during meiosis I?
- chromosomes duplicate
- recombination = homologous chromosomes align and reciprocal exchange of genetic material occurs between homologous but nonidentical chromatids
- diploid number of chromosomes is reduced to half number
what happens during meiosis II?
splitting of sister chromatids
(like mitosis but no additional replication)
in female meiosis how many of the 4 daughter cells survive?
only 1
(all 4 survive in male meiosisis)
what is aneuploidy?
abnormality in number of chromosomes i.e. chromosomes are not haploid
what happens in non-disjunction?
what increases risk of non-discjunction?
pairs of homologous chromosomes at **meiosis I **or sister chromatids during mitosis anaphase do not separate so both chromosomes are passed onto 1 daughter cell
therefore:
- 1 daughter cell has 3 chromosomes (trisomy)
- 1 daughter cell is missing 1 chromosome (monosomy)
advanced maternal age
examples of non-disjunction:
Down Sydrome (trisomy 21)
Edward’s syndrome (trisomy 18)
Patau syndrome (trisomy 13)
^^ order above = most to least common trisomies
Klinefelter Syndrome (47, XXY)
Turner syndrome (45,X) - most common monosomy identified at birth
Down syndrome
i. mutation
ii.clinical features
nondisjunction in 95% (other causes include Robertsonian translocation)
characteristic facial features -upslanting palpebral fissures, epicanthic folds, flat midface, brachycephaly (short anterior-posterior diameter of cranium)
moderate- severe learning difficulties (100%)
cardiac problems (40-50%, VSD, ASD, AVSD)
dementia (10-15%)
ALL
Edward’s syndrome
i. which chromosome is affected
ii. what’s the issue
iii. clinical features
poor prenatal/ postnatal outcomes
i. trisomy 18
ii.
meiotic dysjunction
unbalanced Robertsonian translocations (less common)
iii.
survival - usually <1 year
Profound learning difficulties (100%)
Congenital heart disease (90%, commonly VSD)
Facial clefts
Spina bifida
Clenched hands
Rocker-bottom feet
Patau syndrome
i. chromosome affected
ii. genetic cause
iii. clinical features
i. trisomy 13
ii. 90% nondysjunction of chromosome 13 (majority of these during maternal meiosis - rest = due to unbalanced translocations (primarily Robertsonian translocations)
iii.
highest rate of spontaneous pregnancy loss of all the trisomies
Profound learning difficulties (100%)
Holoprosencephaly (60–70%) = when brain doesn’t separate into 2 hemispheres properly
Scalp defects
Cleft lip/palate (60–70%)
Microphthalmia/anophthalmia (60–70%)
Congenital heart disease (80%, VSD, ASD)
Postaxial polydactyly (60–70%)
Omphalocele
Renal anomalies
Klinefelter syndrome
i. affected genes
ii. clinical features
i. additional sex chromosome 47 XXY
ii. Slightly decreased IQ but within the normal range
Tall stature
feminine fat distribution
small testes
Infertility
Transient gynaecomastia
Klinefelter dx:
not usually dx unless incidental finding during:
prenatally
during chorionic villus sampling (CVS) or amniocentesis or in adulthood during infertility investigations
does not cause increase nuchal translucency so not ID on scan
i. hormonal changes in Klinefelter’s:
ii. incidence of Klinefelters
hormonal imbalances
FSH, LH ^^
estradiol ^^
SHBG^^ (sex hormone binding globulin)
testosterone vv
ii. 1 in 650 males
triple X syndrome clinical features:
Slightly decreased IQ but within the normal range
Tall stature
Normal fertility
usual only found incidentally
XYY syndrome clincial features:
Slightly decreased IQ (within the normal range)
Tall stature after puberty
Behavioural problems
Turner syndrome
i. common antenatal feature which prevents survival to term
ii. which finding on USS would make you consider this as dx
iii. clinical features
45,X
i. usually do not survive to term due to hydrops fetalis
ii. nuchal translucency >4mm
iii. primary amenorrhoea, delayed puberty
Turner syndrome
i. clinical features
ii. rx:
- to promote puberty
- to prevent osteoporosis
i. amenorrhoea (may have spontaneous menstruation due to mosaicism)
delayed puberty
short stature
webbing of neck
cubitus valgus (angling out of forearm at elbow)
widely spaced nipples
cardiac abnormalities (most commonly bicuspid aortic valve)
renal abnormalities
most common cause of gonadal dysgenesis
ii. - low dose ostrogen to promote puberty
- LT hormone replacement to prevent osteoporosis
what are reciprocal translocations?
Chromosome rearrangements involving the transfer of genetic material between two nonhomologous chromosomes
most common translocation in humans
t(11; 22)(q 23; q 11)
involves chromosome 11 and 22
what happens in Robertsonian translocation?
chromosome rearrangement that involves fusion of the long arms of two acrocentric chromosomes and loss of their short arms.
The genes contained on the short arms are represented elsewhere and so their loss does not result in any phenotypic effect of acrocentric chromosomes.
which 5 chromosomes can Robertsonian translocation affect?
only the acrocentric ones!!
13, 14, 15, 21, 22
most common Robertsonian translocations (2)
rob (13q; 14q)
involves fusion of chromosome 13 to chromosome 14
rob(14q; 21q)
involves fusion of chromosome 14 to chromosome 21
what is impriting?
(in context of Robertsonian translocation)
which 2 chromosomes are imprinted genes found on?
process by which one parental allele is preferentially silenced according to its parental origin.
14 & 15
what is UPD?
which chromosomes can it affect?
uni-parental disomy …. p 277
again only in with chromosome 14 & 15
outcome & clinical features of
i. maternal UPD 14
ii. paternal UPD 14
i. survive to term
–> small, learning difficulties, hypotonia, relative marocephaly
ii. spontaneous miscarriage
–> (if survive to term) profound LD, feeding diffiuclties, joint contractures
outcome of:
i. paternal UPD15
ii. maternal UPD 15
i. Angelman syndrome
ii. Prader-Willi syndrome
Angelman syndrome
i. cause
ii. clinical features
i. paternal UPD 15
ii. severe learning difficulties
characteristic facial
appearance
ataxic gait
Prader-Willi syndrome
i. cause
ii. clinical features
i. maternal UPD 15
ii. severe learning difficulties
poor feeders in neonatal period, then insatiable appetite and overweight
hypotonic
short stature
what are chromosomal microdeletions?
how are these usually picked up?
chromosomal deletions that are too small to be detected by light microscopy using conventional cytogenetic methods
microarray aCGH
common microdeletion syndromes:
5p15 (cri du chat)
7q11 (Williams)
22q11 (DiGeorge)
Cri du chat
i. mutation
ii. clinical features
5p15 deletion
Severe learning difficulties
Characteristic cat-like cry
Characteristic facial appearance with bitemporal narrowing, hypertelorism (wide distance between eyes)
and downslanted palpebral fissures
Williams syndrome
i. mutation
ii. clinical features
7q11
Mild to severe learning difficulties
Cardiac problems, particularly supravalvular aortic/pulmonary stenosis
Renal artery stenosis
Characteristic facial appearance with short upturned nose, long philtrum, wide mouth,
periorbital fullness
‘Cocktail party personality’ (chatty, interactive behaviour)
DiGeorge syndrome
i. mutation
ii. other names
iii. clinical features
22q11 deletion
velocardiofacial
Shprintzen
C- cardiac anomalies (most commonly tetralogy of Fallot, VSD, interrupted aortic arch)
A - abnormal facies
(tubular nose, narrow palpebral fissures
and simple ears)
T - t-immune cell disorder
C- cleft palate
H - hypocalcaemia
22 - variable deletion on chromosome 22
Mild to moderate learning difficulties
+
Short stature
Psychiatric disorders
Renal anomalies
what are missense mutations?
single-base substitutions that have occurred in a coding, critical region of the gene.
what is a frameshift mutation?
one or more bases
(but not a multiple of three) are inserted or deleted from
the usual genetic sequence so disrupting the normal
reading frame
eventually a new stop codon will be generated resulting in abnormal protein being prematurely truncated
what are nonsense mutations?
a single-base substitution that generates a premature stop codon resulting in a truncated protein
what do both nonsense and frameshift mutations produce?
what are they thus both collectively called?
truncated proteins
truncating mutations
what is splicing?
what are splice mutations?
removal of introns from primary transcript
mutations that affect nucleotides at the splice site (junction between introns and extrons)
what are exon deletions?
occur when 1 or more exons are deleted in a process that does not constitute an alternative splicing event