Genetics Flashcards
Homogentisic oxidase deficiency
aka alkaptonuria
Autosomal recessive alleles on chromosome 3q2
Tissue accumulation of homogentisic acid
- Intermediate in phenylalamine and tyrosine metabolism
- Forms melanin-like polymers leading to deposition of dark material in fibrous tissue and cartilage
- Can also be excreted in urine giving it a dark colour
Features:
- Dark urine on standing
- Ochronosis
- skin pigmentation
- esp. around sweat glands
- Ochronotic arthropathy
Diagnosis:
- Urine chromotography to identify homogentisic acid
- Gene sequencing
Management:
- Screening for cardiovascular, renal, prostate problems
- Dietary resctriction for tyrosine and phenylalanine
Hereditary spherocytosis
Most commonly due to alpha-spectrin (SPTA1) deficiency
- Autosomal dominant
Other causes are mutations in SLC4A1, SPTB, ANK1, EPB42
Features:
- Chronic haemolytic anaemia
- Jaundice
- Gallstones
- Splenomegaly
- Aplastic crisis if infected with parvovirus B19
Investigations:
- FBC - haemolytic anaemia, raised MCV
- Blood film = spherocytes, reticulocytosis
Management:
- Supportive - transfusion, EPO
- Folic acid supplements
- Splenectomy
Glycogen synthetase deficiency
Type 0 glycogen storage disease
- Impairs liver glycogen synthesis
- Mutation in GYS2 on chr 12
Features:
- Postprandial hyperglycaemia
- Fasting hypoglycaemia + ketosis
- Muscle cramps
Investigations:
- Blood glucose + ketone monitoring
- Genetic sequencing
Management:
- Diet - high protein, complex carbohydrates
Hereditary haemorrhagic telangiectasia
aka Osler-Weber-Rendau syndrome
Autosomal dominant
Features:
- Spontaneous and recurrent epistaxis
- Multiple telangiectasias
- Visceral AVMs - most commonly pulmonary and hepatic
Management:
- Oestrogen therapy in women
- Laser treatment of telangiectasias
Fragile X Syndrome
The most common hereditary cause of mental disability
- M > F
- X-linked dominant
- Mutation in FMR-1
Often presents later in life
Variable penetrance
50% of female carriers have intellectual impairment
Features:
- Short stature
- Large head circumference
- Pale irises
- Characteristic facies - large forehead, long face and nose, prominent jaw, high-arched palate, large ears.
- Macro-orchidism
- Intellectual impairment
- Mitral valve prolapse
- Strabismus
- Pes planus
- Joint hyperextension
DiGeorge Syndrome
Deletion in Chr 22q11
- Leads to failure of neural crest cell migration
- Therefore failure of 3rd + 4th pharyngeal
pouch formation - thymus, parathyroid, aortic
arch, lips, ears
Features:
C - cardiac abnormalities e.g. ToF
A - abnormal facies e.g. micrognethia,
hypertelorism, short philtrum
T - thymic hypoplasia -> low T cells, low IgG/A
C - cleft palate
H - hypocalacaemia from parathyroid hypoplasia
22 - chr 22 deletion
Neurofibromatosis type 1
Autosomal dominant mutation in NF1 on chr 17
- 1/2000
Must have 2 or more of the following:
- >=6 cafe au lait macules if pre-pubertal or > 15 if post-pubertal
- Two or more neurofibromas or one plexiform neurofibroma
- Axillary or inguinal freckling
- Optic glioma
- Two or more Lisch nodules (optic hamartomas)
- Distinctive osseous lesion
- A first-degree relative with NF1
Other features:
- Intellectual impairment (50%)
- HTN - from RAS or pheochromocytoma
- Optic gliomas
- Vertebral dysplasia
- Malignant neural sheath tumours
Neurofibromatosis type 2
Autosomal dominant or de novo mutation, chr 22
- 1/30,000
- Characterised by multiple CNS tumours
Features:
- Bilateral acoustic neuromas
- Present as deafness in 20s
- Tinnitus
- Vertigo
- Meningiomas
- Glial cell tumours
- Scanty cafe-au-lait spots
Management:
- Annual hearing tests
- MRI screening
- Excision of acoustic neuromas
Myotonic dystrophy
Expansion of a CTG repeat in the dystrophia myotonica protein kinase (DMPK) on chr 19
- Autosomal dominant
- Anticipation phenomenon
Features:
- Cataracts
- Frontal balding
- Hypogonadism
- Weakness, wasting, and myotonia of muscles
- Myotonic facies - ptosis, hanging jaw, wasting
- Inability to let go of examiner’s hand
- Percussion myotonia
- Intellectual impairment (30%)
Multiple endocrine neoplasia
MEN1
- Parathyroid tumours (90%)
- NETs of the pancreas (75%)
- Anterior pituitary gland tumours (50%)
MEN2a
- Phaeochromocytoma
- Medullary thyroid cancer
- +/- PT gland disease
MEN2b
- Phaeochromocytoma
- Medullary thyroid cancer
- Mucocutaneous neuromas
(absence of PT gland disease)
Acute intermittent porphyria
Due to defect in porphobilinogen demaniase
- AD
- Involved in heme synthesis
- Leads to tissue build up of porphyrias
- Multisystem involvement
Triggers:
- Fasting
- Surgery
- Alcohol
- Medications e.g. barbiturates, sulphonylureas, oestrogens
Features:
- GI - bilious vomiting, CIBH, acute abdominal pain
- CNS - neuropathy, seizures, tremor, confusion, muscle weakness, psychiatric sx
- CVD - tachycardia, HTN
- Resp - SOB
- Renal - port-wine urine, bladder distension
Investigations:
- Elevated hepatic aminolevulinate (ALA)
- Elevated serum/urine PBG
Mangement:
- Treat underlying cause
- First 24h
- IV morphine or pethidine
- IV glucose loading - aiming 400g/24-48hr
- If not responding:
- IV haematin for 4-5/7
Complications:
- Liver cirrhosis and HCC
- Permanent neurologial damange
- Misdiagnosis with unnecessary surgery
SCID
Mutations in adenosine deaminase (ADA) which degrades deoxyadenosine into inosine
- Product of DNA breakdown
- Deoxyadenosine is toxic to lymphocytes
- Accumulation -> reduced lymophocytes, esp. i
immature ones in the thymus
Familial hypercholesterolaemia
LDL receptor dysfunction
- Autosomal dominant
- Heterozygous - 1/250 - 1/500 people
- Homozygous - v. rare, presents in childhood
Features:
- Total cholesterol > 7.5
- Hx of premature cardiovascular diseaes
- Tendon Xanthomata
- Xanthelasma
Management:
- Simon-Broome criteria to diagnosis
- Lipid-lowering therapy, uptitrated until achieve 50% reduction in LDL-C
Congenital adrenal hyperplasia
Subdivided in classic (severe) and non-classic (mild) forms
- Non-classic can be revealed via corticotropin
stimulation test
- All autosomal recessive disorders
21-hydroxylase deficiency (90%)
- Cortisol +/- aldosterone deficiency, androgen excess
- Salt-wasting crisis
- Virilisation
- Hypotension
- Raised 17-hydroxyprogesterone is diagnostic
11-hydroxylase deficiency (5%)
- Cortisol deficiency, androgen and aldosterone excess
- Hypokalaemia
- Hypertension
- Virilisation
17-hydroxylase deficiency
- Cortisol and androgen deficiency, mineralocorticoid excess
- Non-virilising
- Intersex males
Primary hypertriglyceridaemia
Isolated raised hypertriglyceridaemia
- Number of genetic causes e.g. lipoprotein
lipase deficiency, apoprotein CII deficiency
- Failure to metabolise chylomicrons
Features:
- Presents in childhood
- Eruptive xanthomas
- Lipaemia retinalis
- Retinal vein thrombosis
- Pancreatitis
- Hepatosplenomegaly
Investigations:
- Raised fasting chylomicron levels
- Genetic testing
Management:
- Statins and other lipid-regulating drugs
MEN2
Contains MEN2A and 2B
- RET proto-oncogene mutations
Features:
- 2A
- Phaeochromocytoma
- Medullary thyroid cancer
- Cushing’s disease
- Parathyroid hyperplasia
- 2B
- Marfanoid habitus
- Phaeochromocytoma
- Medullary thyroid cancer
- Intestinal and neuronal paragangliomas
Hereditary non-polyposis colon cancer (HNPCC)
Autosomal dominant disorder of DNA mismatch repair
- Chr 2 and 3
- Increases risk of multiple cancers
- Colon
- Pancreatic
- Gastric
- Ovarian
- Endometrial
Amsterdam criteria:
- Families with three or more individuals with colon cancer where:
- One affected individual is a first-degree
relative of the other two
- At least one individual diagnosed < 50 yr
- Affected individuals are present in at least 2
generations
- FAP excluded
Management:
- Genetic counselling
- Surveillance colonoscopy
- Every 18-24 months from age 25+
- Prophylactic colectomy once sufficient
polyps seen
- Surveillance OGD
- Every 2 years from age 50+
- Surveillance pelvic examination +/- US
- Every year from age 18+
- Prophylactic hysterectomy/oophorectomy
once children born
Kearns-Sayre Syndrome
A mitochondrial disease featuring chronic progressive external ophthalmoplegia (CPEO), pigmentary retinopathy, and onset < 20 yrs
- Variable inheritance patterns
Features:
- CPEO
- Pigmentary retinopathy - incl. retinitis pigmentosa
- Short stature
- Cerebellar ataxia
- Raised CSF protein (>100)
- Conduction blocks
- Anaemia
- Diabetes
- Deafness
- Cognitive defects
Oncogenes and disease
KRAS
- Pancreatic adenocarcinoma (80-90%)
- Colon cancer
- Leukaemia
- Ichthyosis
NRAS
- Malignant melanoma (25%)
p16
- Chronic pancreatitis (30%)
p53
- Pancreatic cancer (50%)
- Ovarian cancer (50%)
Rb
- Retinoblastoma
- Bladder cancer
Marfan’s syndrome
Autosomal dominant mutations in FBN-1 (fibrillin-1) leading to production of abnormal fibrillin
Features:
- Major
- Pectus carinatum or excavatum
- Thumb and wrist sign
- Aortic root dilatation
- Lens subluxation
- Minor
- Arachnodactyly
- High arched palate
- Joint hypermobility
- Mitral valve prolapse
- Scoliosis
Complications:
- Cardiac murmurs
- Aortic dissection or aneurysm
- Spontaneous pneumothorax
- Vision loss
Fanconi syndrome
Aetiology:
- Inherited or acquired
Pathophysiology:
- Inherited or acquired malfunction in NKCC2 transporter in the loop of Henle -> decreased absorption of most electrolytes
Features:
- Failure to thrive
- Hypophosphataemia
- Rickets
- Hypokalaemia
- Type 2 RTA
- Polyuria + polydipsia
- Low Na+, K+, Ca2+, HCO3 - etc.
Management:
- Na+ and K+ supplementation
- Spironolactone/amiloride
Barter’s syndrome
Autosomal recessive condition
- Defect in Na + Cl reabsorption in the thick
ascending limb of the loop of Henle
Features:
- Fetal polyhydramnios + polyuria
- Failure to thrive
- Polyuria + polydipsia
- Kidney stones
- Hypokalaemia = muscle cramps, dizziness
- Hypocalcaemia = tetany, spasms
Investigations:
- Bloods:
- Metabolic alkalosis
- Hypokalaemia
- High renin + aldosterone levels
- Urine
- Hypercalciuria
- Hypermagnesuria
Management:
- K+ supplementation
- Spironolactone
- ACEi
- NSAIDs
- GH supplements
Gitelman syndrome
Autosomal recessivee
- Dysfunction in thiazide-sensitive NaCl co-
transporter
- Impairment in Na + Cl reabsorption in the
DCT
Features:
- Polyuria + polydipsia
- Kidney stones
- Hypokalaemia = muscle cramps, dizziness
- Hypocalcaemia = tetany, spasms
- Hypomagnesaemia
Investigations:
- Bloods:
- Metabolic alkalosis
- Hypokalaemia
- High renin + aldosterone levels
- Urine
- Hypercalciuria
- Hypermagnesuria
Management:
- Spironolactone if Hypokalaemic
- Mg supplements
ADPCKD
Epidemiology:
- Autosomal dominant mutations in PKD 1/2 (chr 16)
- Presents between 30-50 yr
Pathophysiology:
- Polycystin-1/2 mutations lead to dysfunction of cilia and cell junctions
- Form large fluid-filled cysts which cause ischaemic atrophy of surrounding parenchyma as well as obstruction of tubules
Features:
- Polycystic kidneys
- Prone to infection, haemorrhage, etc
- Progressive renal dysfunction - HTN, oedema,
stones
- Liver cysts (33%)
- Berry aneurysms (30%)
- Aortic root dilatation
- With associated MR, TR, etc.
- Increased risk of renal adenomas
Investigations:
- Urinalysis + bloods
- Imaging
- Renal US, CT, MRI
- Genetic testing
Management:
- Early
- Monitoring
- Antihypertensives
- Hydration
- Late
- Requires RRT - dialysis or transplant