Genetics Flashcards

1
Q

Homogentisic oxidase deficiency

A

aka alkaptonuria

Autosomal recessive alleles on chromosome 3q2

Tissue accumulation of homogentisic acid
- Intermediate in phenylalamine and tyrosine metabolism
- Forms melanin-like polymers leading to deposition of dark material in fibrous tissue and cartilage
- Can also be excreted in urine giving it a dark colour

Features:
- Dark urine on standing
- Ochronosis
- skin pigmentation
- esp. around sweat glands
- Ochronotic arthropathy

Diagnosis:
- Urine chromotography to identify homogentisic acid
- Gene sequencing

Management:
- Screening for cardiovascular, renal, prostate problems
- Dietary resctriction for tyrosine and phenylalanine

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2
Q

Hereditary spherocytosis

A

Most commonly due to alpha-spectrin (SPTA1) deficiency
- Autosomal dominant

Other causes are mutations in SLC4A1, SPTB, ANK1, EPB42

Features:
- Chronic haemolytic anaemia
- Jaundice
- Gallstones
- Splenomegaly
- Aplastic crisis if infected with parvovirus B19

Investigations:
- FBC - haemolytic anaemia, raised MCV
- Blood film = spherocytes, reticulocytosis

Management:
- Supportive - transfusion, EPO
- Folic acid supplements
- Splenectomy

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3
Q

Glycogen synthetase deficiency

A

Type 0 glycogen storage disease
- Impairs liver glycogen synthesis
- Mutation in GYS2 on chr 12

Features:
- Postprandial hyperglycaemia
- Fasting hypoglycaemia + ketosis
- Muscle cramps

Investigations:
- Blood glucose + ketone monitoring
- Genetic sequencing

Management:
- Diet - high protein, complex carbohydrates

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4
Q

Hereditary haemorrhagic telangiectasia

A

aka Osler-Weber-Rendau syndrome

Autosomal dominant

Features:
- Spontaneous and recurrent epistaxis
- Multiple telangiectasias
- Visceral AVMs - most commonly pulmonary and hepatic

Management:
- Oestrogen therapy in women
- Laser treatment of telangiectasias

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5
Q

Fragile X Syndrome

A

The most common hereditary cause of mental disability
- M > F
- X-linked dominant
- Mutation in FMR-1

Often presents later in life
Variable penetrance
50% of female carriers have intellectual impairment

Features:
- Short stature
- Large head circumference
- Pale irises
- Characteristic facies - large forehead, long face and nose, prominent jaw, high-arched palate, large ears.
- Macro-orchidism
- Intellectual impairment
- Mitral valve prolapse
- Strabismus
- Pes planus
- Joint hyperextension

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6
Q

DiGeorge Syndrome

A

Deletion in Chr 22q11
- Leads to failure of neural crest cell migration
- Therefore failure of 3rd + 4th pharyngeal
pouch formation - thymus, parathyroid, aortic
arch, lips, ears

Features:
C - cardiac abnormalities e.g. ToF
A - abnormal facies e.g. micrognethia,
hypertelorism, short philtrum
T - thymic hypoplasia -> low T cells, low IgG/A
C - cleft palate
H - hypocalacaemia from parathyroid hypoplasia
22 - chr 22 deletion

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7
Q

Neurofibromatosis type 1

A

Autosomal dominant mutation in NF1 on chr 17
- 1/2000

Must have 2 or more of the following:
- >=6 cafe au lait macules if pre-pubertal or > 15 if post-pubertal
- Two or more neurofibromas or one plexiform neurofibroma
- Axillary or inguinal freckling
- Optic glioma
- Two or more Lisch nodules (optic hamartomas)
- Distinctive osseous lesion
- A first-degree relative with NF1

Other features:
- Intellectual impairment (50%)
- HTN - from RAS or pheochromocytoma
- Optic gliomas
- Vertebral dysplasia
- Malignant neural sheath tumours

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8
Q

Neurofibromatosis type 2

A

Autosomal dominant or de novo mutation, chr 22
- 1/30,000
- Characterised by multiple CNS tumours

Features:
- Bilateral acoustic neuromas
- Present as deafness in 20s
- Tinnitus
- Vertigo
- Meningiomas
- Glial cell tumours
- Scanty cafe-au-lait spots

Management:
- Annual hearing tests
- MRI screening
- Excision of acoustic neuromas

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9
Q

Myotonic dystrophy

A

Expansion of a CTG repeat in the dystrophia myotonica protein kinase (DMPK) on chr 19
- Autosomal dominant
- Anticipation phenomenon

Features:
- Cataracts
- Frontal balding
- Hypogonadism
- Weakness, wasting, and myotonia of muscles
- Myotonic facies - ptosis, hanging jaw, wasting
- Inability to let go of examiner’s hand
- Percussion myotonia
- Intellectual impairment (30%)

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10
Q

Multiple endocrine neoplasia

A

MEN1
- Parathyroid tumours (90%)
- NETs of the pancreas (75%)
- Anterior pituitary gland tumours (50%)

MEN2a
- Phaeochromocytoma
- Medullary thyroid cancer
- +/- PT gland disease

MEN2b
- Phaeochromocytoma
- Medullary thyroid cancer
- Mucocutaneous neuromas
(absence of PT gland disease)

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11
Q

Acute intermittent porphyria

A

Due to defect in porphobilinogen demaniase
- AD
- Involved in heme synthesis
- Leads to tissue build up of porphyrias
- Multisystem involvement

Triggers:
- Fasting
- Surgery
- Alcohol
- Medications e.g. barbiturates, sulphonylureas, oestrogens

Features:
- GI - bilious vomiting, CIBH, acute abdominal pain
- CNS - neuropathy, seizures, tremor, confusion, muscle weakness, psychiatric sx
- CVD - tachycardia, HTN
- Resp - SOB
- Renal - port-wine urine, bladder distension

Investigations:
- Elevated hepatic aminolevulinate (ALA)
- Elevated serum/urine PBG

Mangement:
- Treat underlying cause
- First 24h
- IV morphine or pethidine
- IV glucose loading - aiming 400g/24-48hr
- If not responding:
- IV haematin for 4-5/7

Complications:
- Liver cirrhosis and HCC
- Permanent neurologial damange
- Misdiagnosis with unnecessary surgery

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12
Q

SCID

A

Mutations in adenosine deaminase (ADA) which degrades deoxyadenosine into inosine
- Product of DNA breakdown
- Deoxyadenosine is toxic to lymphocytes
- Accumulation -> reduced lymophocytes, esp. i
immature ones in the thymus

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13
Q

Familial hypercholesterolaemia

A

LDL receptor dysfunction
- Autosomal dominant
- Heterozygous - 1/250 - 1/500 people
- Homozygous - v. rare, presents in childhood

Features:
- Total cholesterol > 7.5
- Hx of premature cardiovascular diseaes
- Tendon Xanthomata
- Xanthelasma

Management:
- Simon-Broome criteria to diagnosis
- Lipid-lowering therapy, uptitrated until achieve 50% reduction in LDL-C

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14
Q

Congenital adrenal hyperplasia

A

Subdivided in classic (severe) and non-classic (mild) forms
- Non-classic can be revealed via corticotropin
stimulation test
- All autosomal recessive disorders

21-hydroxylase deficiency (90%)
- Cortisol +/- aldosterone deficiency, androgen excess
- Salt-wasting crisis
- Virilisation
- Hypotension
- Raised 17-hydroxyprogesterone is diagnostic

11-hydroxylase deficiency (5%)
- Cortisol deficiency, androgen and aldosterone excess
- Hypokalaemia
- Hypertension
- Virilisation

17-hydroxylase deficiency
- Cortisol and androgen deficiency, mineralocorticoid excess
- Non-virilising
- Intersex males

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15
Q

Primary hypertriglyceridaemia

A

Isolated raised hypertriglyceridaemia
- Number of genetic causes e.g. lipoprotein
lipase deficiency, apoprotein CII deficiency
- Failure to metabolise chylomicrons

Features:
- Presents in childhood
- Eruptive xanthomas
- Lipaemia retinalis
- Retinal vein thrombosis
- Pancreatitis
- Hepatosplenomegaly

Investigations:
- Raised fasting chylomicron levels
- Genetic testing

Management:
- Statins and other lipid-regulating drugs

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16
Q

MEN2

A

Contains MEN2A and 2B
- RET proto-oncogene mutations

Features:
- 2A
- Phaeochromocytoma
- Medullary thyroid cancer
- Cushing’s disease
- Parathyroid hyperplasia
- 2B
- Marfanoid habitus
- Phaeochromocytoma
- Medullary thyroid cancer
- Intestinal and neuronal paragangliomas

17
Q

Hereditary non-polyposis colon cancer (HNPCC)

A

Autosomal dominant disorder of DNA mismatch repair
- Chr 2 and 3
- Increases risk of multiple cancers
- Colon
- Pancreatic
- Gastric
- Ovarian
- Endometrial

Amsterdam criteria:
- Families with three or more individuals with colon cancer where:
- One affected individual is a first-degree
relative of the other two
- At least one individual diagnosed < 50 yr
- Affected individuals are present in at least 2
generations
- FAP excluded

Management:
- Genetic counselling
- Surveillance colonoscopy
- Every 18-24 months from age 25+
- Prophylactic colectomy once sufficient
polyps seen
- Surveillance OGD
- Every 2 years from age 50+
- Surveillance pelvic examination +/- US
- Every year from age 18+
- Prophylactic hysterectomy/oophorectomy
once children born

18
Q

Kearns-Sayre Syndrome

A

A mitochondrial disease featuring chronic progressive external ophthalmoplegia (CPEO), pigmentary retinopathy, and onset < 20 yrs
- Variable inheritance patterns

Features:
- CPEO
- Pigmentary retinopathy - incl. retinitis pigmentosa
- Short stature
- Cerebellar ataxia
- Raised CSF protein (>100)
- Conduction blocks
- Anaemia
- Diabetes
- Deafness
- Cognitive defects

19
Q

Oncogenes and disease

A

KRAS
- Pancreatic adenocarcinoma (80-90%)
- Colon cancer
- Leukaemia
- Ichthyosis

NRAS
- Malignant melanoma (25%)

p16
- Chronic pancreatitis (30%)

p53
- Pancreatic cancer (50%)
- Ovarian cancer (50%)

Rb
- Retinoblastoma
- Bladder cancer

20
Q

Marfan’s syndrome

A

Autosomal dominant mutations in FBN-1 (fibrillin-1) leading to production of abnormal fibrillin

Features:
- Major
- Pectus carinatum or excavatum
- Thumb and wrist sign
- Aortic root dilatation
- Lens subluxation
- Minor
- Arachnodactyly
- High arched palate
- Joint hypermobility
- Mitral valve prolapse
- Scoliosis

Complications:
- Cardiac murmurs
- Aortic dissection or aneurysm
- Spontaneous pneumothorax
- Vision loss

21
Q

Fanconi syndrome

A

Aetiology:
- Inherited or acquired

Pathophysiology:
- Inherited or acquired malfunction in NKCC2 transporter in the loop of Henle -> decreased absorption of most electrolytes

Features:
- Failure to thrive
- Hypophosphataemia
- Rickets
- Hypokalaemia
- Type 2 RTA
- Polyuria + polydipsia
- Low Na+, K+, Ca2+, HCO3 - etc.

Management:
- Na+ and K+ supplementation
- Spironolactone/amiloride

22
Q

Barter’s syndrome

A

Autosomal recessive condition
- Defect in Na + Cl reabsorption in the thick
ascending limb of the loop of Henle

Features:
- Fetal polyhydramnios + polyuria
- Failure to thrive
- Polyuria + polydipsia
- Kidney stones
- Hypokalaemia = muscle cramps, dizziness
- Hypocalcaemia = tetany, spasms

Investigations:
- Bloods:
- Metabolic alkalosis
- Hypokalaemia
- High renin + aldosterone levels
- Urine
- Hypercalciuria
- Hypermagnesuria

Management:
- K+ supplementation
- Spironolactone
- ACEi
- NSAIDs
- GH supplements

23
Q

Gitelman syndrome

A

Autosomal recessivee
- Dysfunction in thiazide-sensitive NaCl co-
transporter
- Impairment in Na + Cl reabsorption in the
DCT

Features:
- Polyuria + polydipsia
- Kidney stones
- Hypokalaemia = muscle cramps, dizziness
- Hypocalcaemia = tetany, spasms
- Hypomagnesaemia

Investigations:
- Bloods:
- Metabolic alkalosis
- Hypokalaemia
- High renin + aldosterone levels
- Urine
- Hypercalciuria
- Hypermagnesuria

Management:
- Spironolactone if Hypokalaemic
- Mg supplements

24
Q

ADPCKD

A

Epidemiology:
- Autosomal dominant mutations in PKD 1/2 (chr 16)
- Presents between 30-50 yr

Pathophysiology:
- Polycystin-1/2 mutations lead to dysfunction of cilia and cell junctions
- Form large fluid-filled cysts which cause ischaemic atrophy of surrounding parenchyma as well as obstruction of tubules

Features:
- Polycystic kidneys
- Prone to infection, haemorrhage, etc
- Progressive renal dysfunction - HTN, oedema,
stones
- Liver cysts (33%)
- Berry aneurysms (30%)
- Aortic root dilatation
- With associated MR, TR, etc.
- Increased risk of renal adenomas

Investigations:
- Urinalysis + bloods
- Imaging
- Renal US, CT, MRI
- Genetic testing

Management:
- Early
- Monitoring
- Antihypertensives
- Hydration
- Late
- Requires RRT - dialysis or transplant

25
Von-Hippel Lindau syndrome
An autosomal dominant condition of mutations in the VHL protein leading to neoplasia Most commonly haemoangiomas with risk of secondary haemorrhage Features: - Cerebellar haemangiomas - Retinal haemangiomas - Renal and extra-renal cysts - Phaeochromocytoma - Clear cell renal cell carcinoma
26
Liddle syndrome
Mutations to ENaC such that excessive sodium reabsorption occurs in the collecting ducts Features: - Hypokalaemia - HTN - Metabolic alkalosis
27
Barters vs Gitelman vs Liddle
Barters - Thick loop of Henle - Impaired Na+/Cl- reabsoprtion - Normotensive - Failure to thrive - Normal magnesium - Elevated renin + aldosterone - Hypokalaemia + metabolic alkalosis Gitelman - Distal convoluted tubule - Impaired Na+/Cl- reabsorption - Normotensive - Normal development - Hypomagnesaemia - Elevated renin + aldosterone Liddle - Collecting ducts - Excessive Na+ reabsorption - Early-onset hypertension - Normal development - Normal magnesium - ?normal renin + aldosterone
28
Alport syndrome
Inherited disorder of type IV collagen synthesis - Variable inheritance patterns, majority X-linked - Most notably affects glomerular basement membrane - Also impacts function of inner ear Features: - Progressive renal failure - FSGS with haematuria, proteinuria, HTN - Sensorineural hearing loss - High frequency lost first - Lenticonus Investigations: - Bloods - Echo - LVH or aortic abnormalities - Renal biopsy - Genetic testing
29
Hypokalaemic periodic paralysis
Aetiology: - Mutations in muscle VGCCs - AD - Onset in adolescence Features: - Episodic severe muscle weakness - Triggered by strenuous exercise or high carbohydrate diet - Resolve over 24-72hr - Hypokalaemia Management: - Acute - KCl, although normally self-resolves - Long-term - Trigger avoidance - Acetazolamide or spironolactone
30
Polyglandular syndrome 1
Autosomal recessive Features: - Hypoparathyroidism (90%) - Mucocutaneous candidiasis - Adrenal insufficiency (60%) - Primary gonadal failure - Primary hypothyroidism - Rarely, hypopituitarism or diabetes insipidus
31
Polyglandular syndrome 2
Autosomal recessive, autosomal dominant, or polygenic Features: - Adrenal insufficiency - Hypothyroidism - T1DM - Gonadal failure - Rarely, diabetes insipidus
32
Inborn errors of metabolism and newborn heelprick screening
Types of error: - Disorders of carbohydrate metabolism e.g. glycogen storage disease, G6PD deficiency - Disorders of amino acid metabolism - Organic acidaemias - Urea cycle defects - Disorders of fatty acid oxidation e.g. MCADD - Disorders of porphyrin metabolism e.g. AIP - Disorders of purine/pyramidine synthesis e.g. Lesch-Nyhan syndrome - Peroxisome disorders e.g. Zellweger syndrome - Mitochondrial disorders - Lysosomal disorders e.g. Fabry, Gaucher, Niemann-Pick Heelprick screening - phenylketonuria (PKU) - medium-chain acyl-CoA dehydrogenase deficiency (MCADD) - maple syrup urine disease (MSUD) - isovaleric acidaemia (IVA) - glutaric aciduria type 1 (GA1) - homocystinuria
33
Homocystinuria
Aetiology: - Autosomal recessive mutations in cystathione beta synthetase - involved in conversion of methionine to cystine + serine, homocystine is intermediate Features: - Mental retardation - Appearance: - Tall - Arachnodactyly - High-arched palate - Pectus excavatum - Cardiac: - AR and MR - Coronary artery thrombosis - Vascular - Increased risk of DVTs - Ophthalmological: - myopia - Lens dislocation - Retinal detachment - Osteoporosis Investigations: - May be picked-up on neonatal heelprick screening - Urine - Positive cyanide nitroprusside test - Presence of homocysteine Management: - Folic acid supplementation - Pyridoxine - Low methionine diet
34
Glucose-6-phosphate deficiency
X-linked recessive disorder - More common in Mediterranean, Middle-Eastern, and African patients Pathophysiology: - Involved in the pentose phosphate pathway - Roles in maintaining red cell membrane flexibility and haem oxygenation - Deficiency leads to increased rigidity + methaemoglobinaemia which together promote haemolysis Features: - Acute haemolytic anaemia - Triggers include infection and medications e.g. quinines, trimethoprim, fava beans - Gallstones - Neonatal jaundice - Methaemoglobinaemia Investigations: - Blood film - Heinz bodies - denatured haemoglobin - G6P assay Management: - Treat/avoid triggers - Blood transfusion
35
Alpha-thalassaemia
Mutation of 1-4 of the alpha-haemoglobin chain genes causing inactivation Phenotypes: - Single inactivation - 'Trait' - Microcytic hypochromic cells, no anaemia - Double inactivation - Microcytic hypochromic cells +/- mild anaemia - Triple inactivation - HbH disease - Microcytic hypochromic anaemia - Splenomegaly - Complete inactivation - Hydrops fetalis with death in utero
36
Beta-thalassaemia
Mutation in beta-haemoglobin genes leading to inactivation or reduced function Absence/reduction in beta-chains also leads to overproduction of alpha chains and alternative types of haemoglobin Phenotypes: - Major - no functional copies - Microcytic anaemia beginning at young age (3-6 months) - Mild jaundice - Failure to thrive - Splenomegaly - Bone deformities - Regular transfusions + iron chelation - Intermedia - reduced function/quantity - Microcytic anaemia require occasional transfusions - Trait - Mild microcytic anaemia - Raised HbA2 - Raised red cell count Management: - Monitoring - Hb - need for transfusion - Ferritin - need for iron chelation - Blood transfusions - Prophylactic splenectomy - Bone marrow transfusion
37
Sickle cell anaemia
Pathophysiology: - Glu -> Val in the haemoglobin beta-chain - Causes chain to become insoluble and crystallise whilst in the deoxy state - Haemolysis - Cell deposition/entrapment in small blood vessels Features: - Chronic haemolytic anaemia - Hyposplenism - Increased infection risk Management: - Avoid any triggers for crises - Vaccination + prophylactic antibiotics if hyposplenic - Hydroxycarbamide - Stimulates production of HbF which does not sickle - Exchange transfusion - Bone marrow transplant Complications: - Stroke - Avascular necrosis of the large joints (e.g. hip) - Pulmonary HTN - Priapism - CKD secondary to papillary necrosis - Retinopathy - Acute chest crisis - Acute pain crisis - Osteomyelitis of the long bones
38
Fanconi anaemia
A rare autosomal recessive disorder of the bone marrow - Due to mutations in the FA/BRCA DNA repair pathway Features: - Aplastic anaemia - Presents at c. 5 years - Short with microcephaly - Horseshoe kidney - Abnormal pigmentation
39
Carney complex
Aetiology: - Autosomal dominant - Inactivating mutation of protein kinase A (PKA) on Chr 17 Features: - Spotty skin pigmentation - Myxoma - Psammomatous melanotic schwannoma (PMS) - Endocrine tumours Diagnosis: - Two features - One feature + affected relative