Genetic Testing, Therapy, Counseling (7,8,9,11) Flashcards

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1
Q

What is not a trend that has been recently observed?

a. The age of first time mothers has increased
b. Incidence of aneuploidies increases with maternal age
c. The age of mothers and human reproduction rate has increased over time
d. A 30 year old woman has a 1 in 21 chance of delivery a baby with aneuploidy

A

d. A 30 year old woman has a 1 in 21 chance of delivery a baby with aneuploidy

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2
Q

What is false about PGD?

a. Biopsy can be followed by FISH or PCR to detect the presence of mutations
b. It can only occur once implantation has occurred
c. IVF is used and a cell is sampled from the 8 cell stage
d. It can be used if there is a known family mutation or issues with recurrent chromosomes abnormalities

A

b. It can only occur once implantation has occurred

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3
Q

What is Intra Cytoplasmic Sperm Injection used for?

a. To create embryos that undergo PGD testing
b. To ensure a saviour child has a specific tissue genotype for their ill sibling
c. To reduce the risk of contamination with sperm DNA during PCR if PCR analysis is required
d. To aid with female infertility

A

c. To reduce the risk of contamination with sperm DNA during PCR if PCR analysis is required

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4
Q

When wouldn’t an invasive test such as amniocentesis or chorionic villus sampling be used?

a. When there is a high risk of polyploidy
b. There is an abnormal maternal serum test in the second trimester
c. There is an abnormal ultrasound
d. There is a history of chromosome abnormality or single gene mutation

A

a. When there is a high risk of polyploidy

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5
Q

What is false about Chorionic Villus Sampling and Amniocentesis?

a. Amniocentesis has an abortion risk of 3.2% whilst CVS has a 5% risk
b. Both are undertaken at 12 weeks gestation
c. Amniocentesis is recommended to mothers over 37 years
d. Care must be taken in CVS to separate maternal and foetal tissue

A

b. Both are undertaken at 12 weeks gestation

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6
Q

What is not a routine neonatal screening test?

a. Muscular Dystrophy
b. PKU
c. Hypothyroidism
d. Cystic Fibrosis

A

a. Muscular Dystrophy

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7
Q

What is not involved in screening for cystic fibrosis in newborns?

a. Those with high levels of IRT are recalled for further testing by a 12 mutation analysis
b. Those with only 1 mutation are not subjected to further testing
c. Those with 2 CF mutations are diagnosed with CF
d. The most common mutation is p.F508del

A

b. Those with only 1 mutation are not subjected to further testing

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8
Q

• Aneuploidy refers to the loss or gain of a set of chromosomes.

A

F

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9
Q

• In 2013 the median age of first time mothers was 29.3 as opposed to 1986 when it was 25.4.

A

T

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10
Q

• When the risk is there, it is common to carry out foetal genetic testing for breast cancer, FAP and Familial Alzheimer’s disease.

A

F

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11
Q

• Ultrasounds are routine tests carried out once in a pregnancy at the 24 week stage.

A

F

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12
Q

• Trisomy 21 can be indicated by high levels of oestriol and low levels of hCG in maternal blood.

A

T

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13
Q

• NIPD can determine aneuploidies but not mutations in the foetus.

A

F

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14
Q

What was involved in the early attempted treatments of XSCID?

a. David Vetter died due to an intense immune response to receiving T cells transduced with functional ADA
b. Ashanthi DeSilva now receives periodic infusions of T cells transduced with a retroviral vector with a functional ADA gene
c. The most common treatment method utilises an adenoviral vector carrying the functional ADA gene
d. Ashanthi DeSilva died due to Epstein Barr virus contracted following a bone marrow transplant

A

b. Ashanthi DeSilva now receives periodic infusions of T cells transduced with a retroviral vector with a functional ADA gene

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15
Q

Which is not one of the most common viral gene therapy vectors?

a. Retroviral
b. Lentiviral
c. Papovaviral
d. Adeno-associated viral

A

c. Parvoviral

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16
Q

Which viral vector is described accurately?

a. Adeno-associated viral vectors have ssDNA that remains as an extra chromosomal entity
b. Retroviral vectors have dsDNA that can integrate or remain extra chromosomal
c. Adeno viral vectors have ssDNA that remains as an extra chromosomal entity
d. Lentiviral vectors have ssRNA that remains extra chromosomal in non-dividing cells

A

a. Adeno-associated viral vectors have ssDNA that remains as an extra chromosomal entity

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17
Q

What is not an advantage of non-viral gene therapy vectors?

a. Versatility
b. No size limit
c. Transfer efficiency
d. DNA protection

A

c. Transfer efficiency

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18
Q

What is false about XSCID?

a. It leads to a defective gamma-C chain which means STAT receptors can’t respond and lead to the maturation of lymphocytes
b. Suffers lack B, T and NK cells
c. A pseudotyped gammaretroviral vector was used to treat Rhys Evans
d. Gene therapy generally follows the in vivo route

A

d. Gene therapy generally follows the in vivo route

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19
Q

What is true about the gene therapy treatment for haemophilia?

a. A retroviral vector was used
b. The gene involved was Factor IX
c. The corrected gene was injected into the pancreas
d. ¾ patients risk developing leukaemia due to insertional mutagenesis

A

b. The gene involved was Factor IX

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20
Q

What happened to Jesse Gelsinger and Jolee Mohr?

a. Jesse was cured of Xscid and Jolee died from Epstein Barr virus following bone marrow transplantation
b. Jesse died due to an immune response against the adenoviral vector used to treat his OTC whilst Jolee died due to mixing gene therapy with a suppressed immune system
c. Both Jesse and Jolee developed leukemia as a result of retroviral vector insertional mutagenesis
d. Jesse was cured of OTC and Jolee dies from an adverse immune response to the same treatment

A

b. Jesse died due to an immune response against the adenoviral vector used to treat his OTC whilst Jolee died due to mixing gene therapy with a suppressed immune system

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21
Q

• Gene therapy was initially developed for hereditary, single gene defect diseases but it is now more commonly used to treat polygenic diseases.

A

T

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22
Q

• Most gene therapy clinical trials are focused on cardiovascular and immune disease.

A

F

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23
Q

• Ex vivo delivery involves directly introducing the vector to the patient whilst In vivo delivery first utilises cultured cells derived from the patient which are then reintroduced to the patient.

A

F

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24
Q

• There is no universal gene therapy vector to treat any disease.

A

T

25
Q

• Lentivirus can only transduce cells which are dividing.

A

F

26
Q

• A major advantage of viral gene therapy is the packaging capacity of the vectors.

A

F

27
Q

• Physical non-viral methods of gene delivery increase the cell membrane permeability to plasmids.

A

T

28
Q

• Polyplexes are negatively charged complexes that bind DNA and interact with ligands on cell membranes to import the DNA into the cell.

A

F

29
Q

• Viral gene therapy has been used to treat sight disorder when the normal copy of defective RPE65 is injected between two layers of cells forming retina and therefore restoring photoreceptors.

A

T

30
Q

• Naked DNA injections can be used to treat ischemic limb disease and ischemic heart disease.

A

T

31
Q

What is not a requirement of gene therapy?

a. Know the specific gene defect
b. Have an available copy of the functional gene
c. Target cells should be able to be transfected
d. Transfer of the functional gene so it can be expressed transiently

A

d. Transfer of the functional gene so it can be expressed transiently

32
Q

Which statement is false?

a. Adenoviral and Liposome vectors show high expression levels
b. Adeno-associated viral vectors can carry inserts up to 30kb large
c. Retroviral and lentiviral vectors can integrate into the genome
d. Inflammation is a risk when using adenoviral or adeno-associated vectors

A

b. Adeno-associated viral vectors can carry inserts up to 30kb large

33
Q

Which type of haemoglobin is correctly matched to its relative abundance?

a. α2β2 90%
b. α2δ2 2.5%
c. α2β2 0.5%
d. α2γ2 50%

A

b. α2δ2 2.5%

34
Q

What is not a required plasmid component to produce a Lentiviral vector?

a. Transfer vector (transgene with flanking LTRs)
b. Packaging vector
c. Reverse transcription/integration vector
d. Envelope vector

A

c. Reverse transcription/integration vector

35
Q

What is false about Adeno-associated virus as a gene therapy vector?

a. It integrates specifically at AAVS1 on human chromosome 19
b. It has a small insert size, 4kb
c. It has a DNA genome with ITRs for replication, packing and specific integration
d. In utilises host cell Rep proteins which aids its expression of the transgene

A

d. In utilises host cell Rep proteins which aids its expression of the transgene

36
Q

What is not an advantage of using Herpes virus as a viral vector?

a. It allows for stable gene expression
b. Non-dividing cells can be transduced
c. It can fit large DNA fragments
d. It has an affinity for neuronal tissue

A

a. It allows for stable gene expression

37
Q

Which statement is correct?

a. CRISPR is the most expensive targeted nuclease system to use
b. ZFN is the most reliable and accurate targeted nuclease system
c. TALENS is a relatively cheap and accurate targeted nuclease system that is quick to use
d. CRISPR is a cheap targeted nuclease system with high reliability and accuracy

A

d. CRISPR is a cheap targeted nuclease system with high reliability and accuracy

38
Q

What is not involved in CRISPR genome modification?

a. A cas9 protein that cleaves DNA
b. A 20 nucleotide gRNA sequence with an added NGG motif/PAM site
c. Wildtype Cas9 which requires two gRNAs to be active
d. A crispr RNA sequence (homologous to target site) and a trans-activating crisprRNA that recruits nuclease

A

c. Wildtype Cas9 which requires two gRNAs to be active

39
Q

Which is a feature of Cas9 Nickase and not WT Cas9?

a. It ‘nicks’ a single strand
b. It only requires a single gRNA
c. It induces a double stranded break
d. Cleavage is highly efficient and good for random indels

A

a. It ‘nicks’ a single strand

40
Q

• Monogenic diseases have showed the most success with gene therapy treatments.

A

T

41
Q

• The lentiviral vector carrying the B-globin gene to treat B-thalassemia introduced the risk of sickling RBCs in recipients.

A

F

42
Q

• Normal adult levels of haemoglobin are at about 14 g/dL.

A

T

43
Q

• Following gene therapy, B-thal patients have higher levels of Hb (10g/dL) than normal adults which is likely a result of the artificial vector system over expressing beta globin.

A

F

44
Q

• AAV integrates specifically at AAVS1 on chromosome 19 due to Rep proteins interacting with RBEs at Inverted terminal repeats (ITR).

A

T

45
Q

Which is the most significant cause of cancer?

a. Infection
b. Inheritance
c. Diet
d. Pollution

A

c. Diet

46
Q

What kind of cancer is likely to have an early onset and be due to a single gene mutation?

a. Hereditary
b. Familial
c. Sporadic
d. Polygenic

A

a. Hereditary

47
Q

What is not considered to increase the risk of developing breast or ovarian cancer?

a. Having multiple affected relatives
b. Ashkenazi Jewish ancestry
c. Having relatives diagnosed at a late age
d. Having relatives with both breast and ovarian cancer

A

c. Having relatives diagnosed at a late age

48
Q

When would mutation detection be used?

a. Once a mutation has been found within a family
b. To find a mutation in an affected individual
c. To find out if a mutation is testable
d. To locate a mutation in unaffected individuals

A

b. To find a mutation in an affected individual

49
Q

What is not used to detect mutations?

a. Sequencing
b. NGS
c. MLPA
d. Southern Blot

A

d. Southern Blot

50
Q

What is a benefit of genetic testing?

a. There is no burden of disclosing the information to other family members
b. It can aid future decision making
c. It can impact future employment and insurance choices
d. It can provide accurate information about when you will develop cancer

A

b. It can aid future decision making

51
Q

What can be found through genetic testing?

a. A polymorphism that reveals the disease causing mutation
b. No mutation which excludes the possibility that the disease has a genetic cause
c. A pathogenic mutation which results in the disease
d. A variant of unknown significance that is likely normal genetic variation

A

c. A pathogenic mutation which results in the disease

52
Q

What would not be used by a BRCA1 carrier to manage their cancer risk?

a. Prophylactic mastectomy and/or bilateral salpingo-oophorectomy
b. Tamoxifen taken as a risk reducing drug
c. Annual MRIs and mammograms
d. Yearly MLPA mutation detection

A

d. Yearly MLPA mutation detection

53
Q

• Most cancers are inherited.

A

F

54
Q

• 10-15% of referrals are knocked back for genetic counselling appointments.

A

T

55
Q

• Familial Adenomatous Polyposis is due to a mutation in one gene and often results in prophylactic bowel removal.

A

T

56
Q

• A BOADICEA score is the only factor that needs to be analysed when assessing risk for genetic testing.

A

F

57
Q

• A blood sample can take 2 months to undergo genetic testing.

A

T

58
Q

• Whole genome sequencing is the current preferred technology used for genetic testing.

A

F (Gene panels)