Genes and Health Flashcards
What bond exists between a phosphate and deoxyribose sugar in a nucleotide?
Phosphodiester bond
What bond exists between a deoxyribose and base in a nucleotide?
Glycoscillic
What bonds exist between base pairs?
Hydrogen bonds
Define hydrolysis
A reaction in which water is used to separate
Define condensation
A bond which releases water
Why are DNA molecules antiparallel from each other?
Because the double helix shape cannot be formed unless it is antiparallel
Describe the process of DNA replication
- Helix is Unwound, by which the 2 strands separate. This is done by DNA helicase by breaking hydrogen bonds between bases and separating the polynucleotide strands.
- Then, free active nucleotides line up with their complementary base pairs, at this point, only being joined through hydrogen bonds, not phosphodiester bonds.
- DNA polymerase then moves down the DNA molecule, catalyzing the formation of phosphodiester bonds between the deoxyribose and phosphate groups.
- this now forms semi-conservative, copies of the original DNA strand.
Why do activated nucleotides have 3 phosphate groups?
Because when DNA polymerase joins, it is a condensation reaction and the activated nucleotides lose their 2 phosphate groups, providing energy for the reaction.
Define the following:
1. Monosaccharides
2. Disaccharide
3. Polysaccharide
- Any of the groups of sugars that can’t be hydrolyzed to give a simpler sugar, drawn with one hexagonal shape.
- 2 hexagonal sugars; 2 monosaccharides joined together
- More than 2 Monosaccharides
How do you draw alpha glucose?
normal shape, with OH-H bond on C3
How do you draw Beta Glucose?
same structure, but OH-H bond on both C1 and C3
How do you draw Galactose?
Same structure, but OH-H bond on C1,C3 and C4
How do you draw fructose?
Pentagon, CH2OH-H bond on C1 and C4, OH-H bond on C2 and normal H-OH bond on C3
What is the product of 2 alpha glucose molecules being reacted together?
Maltose
How is water formed from the reaction of 2 monosaccharides
A hydrogen group from one monosaccharide, and a hydroxyl group from the other
What is a glycosidic bond?
The chemical bond between the two molecules of alpha glucose- between C1 and C4 for example (a 1,4 glycosidic bond)
How is sucrose formed?
By chemically combining glucose and fructose
How is Lactose formed?
By combining glucose and galactose
How do we convert a disaccharide back into a monosaccharide?
What type of reaction is this?
Add water back to it, which is called a hydrolysis reaction
Why is glucose soluble in water?
Because it contains hydroxyl groups, which are polar due to the neg charge on the oxygen atom, and a + charge on the hydrogen atom - can form H bonds with water.
What 2 molecules does Starch consist of?
Amylose and amylopectin
Describe the structure of amylose
- it is a polymer of alpha glucose molecules
- it is twisted into a compact helix, with hydrogen bonds forming between glucose molecules along the chain.
- unbranched
- joined by 1,4 glycosidic bonds
How is glucose obtained from starch if a cell needs it?
Hydrolysis reaction (adding water) to break the glycosidic bonds between alpha glucose molecules.
describe the structure of amylopectin
- it is a polymer of alpha glucose molecules joined by 1.4 glycosidic bonds, just like amylose.
- but every 25-30 glucose molecules, it has a branch, and is still a chain of alpha glucose molecules joined by the same 1,4 glycosidic bond. But this time, it’s between C1 on one glucose molecule and C6 on another. - which is a 1,6 glycosidic bond.
- heavily branched polysaccharide.
How is the structure of starch is related to it’s function?
- Amylose forms a tight helix, which makes it compact- meaning that it can store a large number of glucose molecules for its size.
- Starch is insoluble in water, so it doesn’t allow any water in through osmosis.
- Amylopectin is largely branched, meaning that it has several ends. This allows enzymes to rapidly break down starch into glucose through hydrolysis.
Describe the structure of the polysaccharide glycogen
- It is a polymer of alpha glucose molecules joined by 1,4 glycosidic bonds.
- has branches, but more branches than amylopectin, which makes it more compact than it.
- each branch is joined to another chain of alpha glucose molecules, through a 1,6 glycosidic bond.
How is the structure of Glycogen important to carry out it’s function?
- very branched, which means it has a lot of ends, making it easier for enzymes to break down the molecules through hydrolysis. This is important because animals often have a high rate of respiration and their energy needs may change rapidly as well.
- insoluble in water, so it can’t allow water in through osmosis
- too large to diffuse out from the cell membrane, which makes it ideal for storage.
Describe the structure of cellulose
- a polymer of beta glucose, where every second bet glucose molecule flips over, where a 1,4 glycosidic bond can be formed.
- unbranched polysaccharide
Describe how the structure of cellulose allows it to perform it’s function.
- since it is unbranched, this allows chains to get closer together where hydrogen bonds can be formed between chains. This allows cellulose to be extremely strong. (microfibrils, which then create macrofibres together.)
- Permeable to molecules
- strength makes plant cell turgid, so cell doesn’t burst.
define conservative replication
When free nucleotides join the unwinded DNA but form a strand completely from new free nucleotides, and one chain only from the original DNA strand.
Define Semi-conservative replication
When polynucleotide strands form from half of the old DNA, and half from the free nucleotides
How was semi-conservative replication proved?
- bacteria were grown in an N14 medium and were then transferred to a heavier isotope- N-15.
- Bacteria was then removed at each generational interval.
- DNA was extracted and centrifuged (shaken)
- What they found was that the 1st generation gave a mixed DNA strand- one heavy (N15) and one light (N14).
- a second generation would give one light, and one mixed DNA molecule if it was still kept in the light solution.
What does ATP stand for?
- Adenosine triphosphate
What does ADP stand for?
Adenosine diphosphate
Briefly describe the structure of ATP
It is a nucleotide composed of ribose sugar, adenine, and 3 phosphate groups.
Bonds are unstable, which gives them a low activation energy.
What happens when ATP is broken into ADP?
energy is released.
What type of reaction is breaking ATP to ADP?
Hydrolysis
Which enzyme breaks down ATP to ADP?
ATP hydrolase
What is the equation for breaking down ATP to ADP to release energy?
ATP + water —-> ADP + P + energy
What happens when a phosphate is bonded to ADP?
forms ATP, taking energy in
What type of reaction is ADP to ATP?
Condensation
What enzyme carries out the ADP - ATP reaction?
ATP synthase
what is the equation for converting ADP to ATP?
ADP + P + energy —-> ATP + water
where in the cell is ADP converted to ATP?
mitochondria
what are 4 roles of ATP?
- instability= good energy donor
- not long-term energy store, an immediate source of energy
- cells don’t need large amounts of them, and is beneficial because ATP is very quickly formed from ADP+P
- Hydrolysis of ATP to ADP releases instant energy
Why is ATP better for than glucose for releasing energy>
- Hydrolysis of ATP to ADP is an instant energy source but the breakdown of glucose requires many reactions before being released.
- ATP also releases more manageable amounts of energy compared to glucose which may be too much.
For what processes can ATP be required?
Active transport
Metabolic processes, such as making proteins
secretion from lysosomes.
Define conservative replication
The DNA replication where free nucleotides join onto the older strand of DNA, and then break off to make a chain of their own, ending up with a fully new strand of DNA and the older one staying the same.
Define semi-conservative replication.
when free nucleotides join the older polynucleotide strand and form 2 chains- each with 1/2 of the DNA from the old, and 1/2 from the new.
How is maltose formed?
Alpha glucose + alpha glucose —-> maltose +water
what 2 functional groups do amino acids have?
amino group (NH2)
Carboxyl group (COOH)