Generalised Eukaryotic Cells Flashcards

1
Q

Whats defines a Eukaryotic Cell - what are examples of these cells.

A

Those with a true nucleus - found in all multicellular and nonbacterial unicellular organisms (animal, fungal and plant). Contains genetic information (DNA) which can be divided into 2 by mitosis.

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2
Q

What is the plasma membrane - what defines its structure. What can cross this barrier

A

Is a semipermeable barrier which defines the outer cell perimeter. Permeable to small uncharged substances (02, CO2, urea) which diffuse freely across the membrane. Impermeable to charged or large substances which may require transport proteins (ions, amino acids, sugars).

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3
Q

What are 3 processes in which substances can cross the membrane

A

simple diffusion, carrier-mediated transport, endo/exocytosis.

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4
Q

What are the plasma membranes mainly composed of. How are they mainly structured.

A

lipids (fats and protein). The membrane is dynamic, active and fluid. Contain two ‘layers’ of phospholipids (bilipid)

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5
Q

What is the main lipid in the plasma membrane - define these. What is its structure.

A

Contains phospholipids (amphipathic molecules) - because their tail end contains fatty acids which are insoluble in water (hydrophobic), opposite end contains charged phosphate head which are soluble in water (hydrophilic). Hydrophobic heads project to the outside, hydrophilic heads project to the inside of the membrane.

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6
Q

How do phospholipids move within the plasma membrane - what increases and decreases the fluidity of the membrane.

A

Phospholipids are fluid - they move freely within the membrane. Fluidity increases with increased temperature and decreased saturation of fatty acyl tails. Fluidity decreases with decreased temperature, increased saturation of fatty acyl tails and increase in membrane cholesterol content.

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7
Q

What are glycoproteins - where are they found, what is the function.

A

Limited to extracellular aspect of membrane. Carbohydrate portion of glycolipids extends from outer leaflet into extracellular space and forms part of the glycocalyx (sugar coat on outer surface of outer leaflet of plasma membrane). Glycocalyx aids in the attachment of some cells, facilitates cell recognition, helps bind antigen and antigen-presenting cells to cell surface.

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8
Q

Where are proteins found within the membrane - what is their mobility. What are the two different types and where are they found

A

Distributed throughout membrane (mosaic of proteins) with limited mobility. Are either outside of membrane (extrinsic) or spanning the membrane (intrinsic). Intrinsic proteins are dissolved in the lipid bilayer. Extrinsic proteins don’t extend into the lipid bilayer - but can temporarily adhere to either side of the plasma membrane, bond to phospholipids groups or intrinsic proteins of the membrane via noncovalent interactions.

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9
Q

What are some functions of proteins

A

regulatory protein subunits of ion channels or transmembrane receptors, associations with the cytoskeleton and extracellular matrix, and as part of the intracellular second messenger system.

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10
Q

What are the methods of substances crossing the membrane

A

simple diffusion, carrier-mediated transport or by endo/exocytosis

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11
Q

What is the process of simple diffusion - what are the different types.

A

Spontaneous spreading of a substance going from high concentrated area to low concentrated areas (concentration gradient). Can either be a chemical gradient or electrical gradient.

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12
Q

Define osmosis and osmotic pressure. When will a substance have an osmotic pressure of zero.

A

Diffusion of water across semipermeable membrane moving from an area of high water concentration (lower solute concentration = hypotonic) to area of lower water concentration (higher solute concentration = hypertonic).

Osmotic pressure = hydrostatic pressure needed to oppose the movement of water. Isotonic solution (concentration of solute on both sides of the membrane is equal) would have an osmotic pressure of zero.

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13
Q

Define endocytosis - what is it called if a particle is ingested vs fluid.

A

Cell actually invaginates, pinches off and is released intracellularly (endocytotic vesicle).

Solid particle ingested by the cell (i.e bacterium) = phagocytosis.

Fluid ingested = pinocytosis.

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14
Q

What are the two substances that coat vesicles in endocytosis. What are examples of substances these two can be found in

A

Clathrin - protein plays major role in formation of coated vesicles. Receptor-mediated endocytosis of ligands (e.g. low density lipoprotein, growth factors, anti-bodies, etc) is due to Clathrin-coated vesicles. Found in all cells.

Caveolae = most common non-clathrin-coated plasma membrane buds which exist on surface of some cells. Consist of cholesterol-binding protein caveolin with a bilayer enriched in cholesterol and glycolipids.

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15
Q

How do amino acids, sugars and other solutes get across the membrane

A

Carrier-mediated transport: need to reversibly bind to proteins (carriers) in the membrane to get across.

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16
Q

Define exocytosis. What are some examples of substances that undergo this process

A

A cell directs an intracellular vesicle to fuse with the plasma membrane - releasing its contents to the exterior.
Neurotransmitters, pancreatic enzymes, cell membrane proteins/lipids, etc)

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17
Q

In exocytosis, what is the name of the structure that forms when the transient vesicle fuses with the cell membrane.
What are the main types of proteins in these structures - what is their role.

A

Porosome (shaped like a pore) - which are cupped shaped structures where vesicles dock in the process of fusion and secretion.

Main proteins including chloride and calcium channels, actin, and SNARE proteins - which mediate the docking and fusion of vesicles with the cell membrane.

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18
Q

What is the main role of SNARE proteins (2 types of fusion).

A

Mediate vesicle fusion through full fusion exocytosis (vesicle collapses fully into the plasma membrane) or open and close exocytosis (vesicle docks transiently with the membrane and is recycles - i.e. kiss and run).

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19
Q

List the typical components of the interior of a Eukaryotic Cell

A

Cytoplasm, Cytosol, Cytoskeleton, Flagellum,. Cilia, pseudopod, microvilli.

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20
Q

Define cytoplasm - what does it contain, how does transport occur.

A

Cytoplasm is the interior of the cell - refers to all cell components enclosed by cells membrane.
Includes: cytosol, cytoskeleton, and membrane bound organelles.
Transport: Occurs by cyclosis (circular motion of cytoplasm around the cell).

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21
Q

What is cytosol

A

The solution which bathes the organelles and contains numerous solutes like amino acids, sugars, proteins, etc.

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22
Q

What is the cytoskeleton. What is the importance of the cytoskeleton (intracellularly and extracellularly.

A

The cytoskeleton extends throughout the entire cell and has importance in shape and intracellular transportation. Also makes extracellular complexes with other proteins forming a matrix so that cells ‘‘stick together’’ (known as cellular adhesion).

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23
Q

What are the three main components of the cytoskeleton (which is the biggest).

A

In increasing order of size: Microfilaments, intermediate filaments, and microtubules.

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24
Q

What is the role of microfilaments in phagocytosis and cytokinesis

A

Microfilaments squeeze the membrane together in phagocytosis and cytokinesis. They are also important for muscle contraction and microvilli movement.

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24
Q

What is the main function of microfilaments, what are they composed of.
What is the polarity of microfilaments

A

Also known as Actin filaments - important in cell movement and contraction (i.e. actin and myosin). Composed of actin monomer (G actin) linked into a double helix.
They display polarity (having distinct and opposite poles), with polymerization and depolymerization preferentially occurring at the barbed end (+ end - where ATP bound to G actin).

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25
Q

Where are intermediate filaments and microtubules located within a cell. What does this permit
What structures do microtubules also form

A

They extend along axons and dendrites of neurons (acting like railroad tracks). This allows organelles or protein particles to shuttle to or from the cell body.

Microtubules also form:
i) the core of the cilia and flagella.
ii) the mitotic spindles
iii) centrioles.

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26
Q

What is a flagellum - where is it commonly found.

What is the difference between Eukaryotic vs Prokaryotic flagella.

A

An organelle of locomotion found in sperm and bacteria.

Eukaryotic flagella: made from microtubule configurations. Move in a whip-like motion.
Prokaryotic flagella: thin strands of a single protein called flagellin. Move thorough rotation.

27
Q

What are cilia - what is their function.

A

Hair-like vibrating organelles which can be used to move particles along the surface of the cell (in the fallopian tubes - can move eggs through the fallopian tubes towards the uterus).

28
Q

What are flagella and and cilia constructed of. Describe their polarity. Does polymerization occur.

A

Microtubules are involved in cilia and flagella construction - and the spindle apparatus.
They display polarity - polymerization and depolymerization occurring at + end where GTP bound to tubulin subunit.

29
Q

What are centrioles - what are they associated with, where are they located. What is a basal body.

A

Centrioles are cylinder-shaped complexes of microtubules associated with mitotic spindle, located at the base of flagella and cilia: two centrioles can be found at right angles to each other (known as a basal body).

30
Q

What is a pseudopod - where is it located and what is its purpose. What is a pseudopod made up of.

A

is a temporary arm-like projection of a eukaryotic plasma membrane. Involved in the movement and ingestion.
Filled with cytoplasm, pseudopodia primarily consists of actin filaments, microtubules and intermediate filaments.

31
Q

What are microvilli, what is the core composed of, where are they commonly found.

A

Regularly arranged finger like projections with a core of cytoplasm.
Commonly found in the small intestine, where they help to increase the absorptive and digestive surfaces.

32
Q

List the membrane bound organelles

A

Mitochondrion, Lysosomes, Endoplasmic Reticulum, Golgi Apparatus, Peroxisomes, The Nucleus,

33
Q

Define the structure of the mitochondrion, what is its function.

A

Double-membraned organelle - produces most of the chemical energy for the cell (stored in the molecule ATP via aerobic respiration).

34
Q

What is the mitochondrial matrix - where is it located and what does it contain.

Where is DNA located within the cell.

A

Mitochondrial matrix is the inner space surrounded by the mitochondrial inner membrane, which contains several proteins.

Contains enzymes for the Krebs cycle and circular DNA. This is the only cellular DNA found outside of the nucleus (except for chloroplasts).

Mitochondria have their own DNA and ribosomes and replicate independently from eukaryotic cells. Most proteins in the mitochondria are coded by nuclear DNA (inherited solely from the mother).

35
Q

What are lysosomes? What are examples of these in normal cells and in phagocytic cells?

A

In diseased cells, lysosomes may release their powerful acid hydrolases to digest away from the cells (autolysis).

Normal cells: primary (normal) lysosome can fuse with an endocytic vesicle to form a secondary lysosome where the phagocytosed particle (bacterium) can be digested - heterolysis.

Phagocytic cells: numerous lysosomes in these cells of the immune system (macrophages, neutrophils).

36
Q

What is the endoplasmic reticulum? What is its structure and what are the two different kinds?

A

Is an interconnected membraned system resembling flattened sacs and extends from the cell membrane to the nuclear membrane.

Two different kinds:
1. Dotted with ribosomes on its surface (rough ER)
2. Without ribosomes (smooth ER).

37
Q

What are the functions of the two different kinds of ribosomes? What are examples of each of proteins they synthesise?

A

Rough ER: Important in protein synthesis and is abundant in cells synthesising secretory proteins. Associated in synthesis of secretory protein, plasma membrane protein, lysosomal protein.

Smooth ER: abundant in cells synthesising steroids, triglycerides and cholesterol. Associated with synthesis/transport lipids (steroid hormone detoxification of variety of chemicals), common in skeletal muscle cells (muscle contraction and relaxation), phospholipid and fatty acids synthesis/metabolism.

38
Q

What is the Golgi Apparatus structure, describe its polarity and function (2)

A

It forms a stack of smooth membrane sacs or cisternae.

They have distinct polarity with one end being the ‘cis’ face and other being ‘trans’.

Functions in protein modification such as the addition of polysaccharides (glycosylation). Also packages secretory proteins in membrane bound vesicles which can be exocytosed.

39
Q

Describe the difference in orientation of the cis face and trans face in Golgi Apparatus

A

Cis face: Lies close to a separate vesicular-tubular cluster (VTC) also referred to as ER-Golgi intermediate compartment (organelle).

The medial (middle) compartment of the Golgi lies between cis and trans face.

Trans face: Orientated towards vacuoles and secretory granules. Trans Golgi network separates from the trans face and sorts proteins for their final destination.

40
Q

What are Peroxisomes (Microbodies) - what is their function

A

Membrane bound organelles that contain enzymes whose function includes oxidative deamination of amino acids, oxidation of long chain fatty acids and synthesis of cholesterol.

An organelle that can transfer hydrogen from various substrates to oxygen, producing and then degrading hydrogen peroxide (H2O2).

Specialised for carrying out oxidative reactions using molecular oxygen.

41
Q

What is the nucleus surrounded by, how are large particles transported, what is the nucleus responsible for (protein wise) and where does this occur.

A

Surrounded by a double membrane called nuclear envelope.

Throughout membrane are nuclear pores (selectively allowing for the transportation of large particles to and from the nucleus).

Nucleus is responsible for protein synthesis in the cytoplasm via ribosomal RNA (rRNA), messenger RNA (mRNA) and transfer RNA (tRNA).

42
Q

What type of DNA is found within the nucleus.

A

DNA found within the nucleus as chromatin (DNA complexed to proteins like histones) or as chromosomes which are more clearly visible in light microscope.

43
Q

What is the nucleolus, where is it found and what is its structure.

A

spherical structure found in the cell’s nucleus whose primary function is to produce and assemble the cell’s ribosomes.

44
Q

What are chromosomes, what are their structure, what is it composed of, what does it form.

A

Chromosomes are extensively folded chromatin maintained by histone proteins. Each chromosome is composed of DNA and associated proteins - forming a nucleosome (basic structural unit of chromatin).

Chromatin is responsible for RNA synthesis.

45
Q

What are the two different types of chromatin, are they active or inactive.

A

Heterochromatin is a transcriptionally inactive form of chromatin while euchromatin is a transcriptionally active form of chromatin.

46
Q

What is the basic structure of DNA, what are the basic subunits called - how do they attach and what do they form

A

Shaped in a double helical structure.

Nucleotides are the subunits which attach in sequence (polymerise) via phosphodiester bonds to form nucleic acids.

47
Q

What is the basic structure of a nucleotide. Describe each of these three structures in detail.

A

Composed of five-carbon sugar (pentose), a nitrogen base and inorganic phosphate.

The sugar in RNA = ribose, DNA = 2-deoxyribose (oxygen atom is missing in the second position of sugar).

Nitrogen bases: Purines (Adenine, Guanine) and Pyrimidines (Thymine, Cytosine and Uracil). DNA = A,G,C,T. RNA = A,G,C,U.

Backbone of each helix is 2-deoxyribose phosphates (structural support to the molecule).

48
Q

Describe how nitrogen base structure and bonding can increase helix stability.

A

Nitrogen bases project to the centre of double helix in order to hydrogen bond with eachother (one purine and one pyrimidine).

The more hydrogen bonds (the more G-C) the more stable the helix will be.
- Adenine bonds thymine (through two hydrogen bonds).
Guanine only binds cytosine (through three hydrogen bonds).

49
Q

Describe the duplication of DNA process. In what direction are each of the strand synthesised

A

Double helix: There is a parent strand (old) and daughter strand (new).

Daughter strands are synthesised using one nucleotide at a time, enzymes including DNA polymerase and the parents strand as a template .

DNA replication is semi-discontinuous. DNA polymerase only synthesised DNA in a 5’ to 3’ direction. Due to antiparallel nature of DNA the 5’-3’ strand is replicated continuously (leading strand), while the 3’-5- strand is replicated discontinuously (lagging strand) in the reverse order.

50
Q

What are Okazaki Fragments and where does DNA synthesis begin

A

The short, newly synthesised DNA fragments formed on the lagging strand.

DNA synthesis begins at a specific site called the replication origin (replicon) and proceeds in both directions.

51
Q

What can cause cell mutations, what can this do to a cell (3).

A

Environmental factors including chemical and UV radiation.

Structural damage to DNA (cell has accumulated large amount of DNA damage or one that doesn’t repair). Can: become permanently dormant, exhibit unregulated cell division (leads to cancer), succumb to cell suicide (apoptosis).

52
Q

What is the role of the cell cycle. List the two main phases.

A

A period (18-22 hours) where the cell can synthesise new DNA and partition the DNA equally; so cell can divide.

Mitosis and interphase

53
Q

What is the role of mitosis in the cell cycle, what are the two main phases of this cycle.

A

Involves nuclear division (karyokinesis) which is followed by cell division (cytokinesis) - which together form the mitotic phase of the cell cycle. The division of the other cell into its two daughter cells - genetically identical to the parent cell.

54
Q

What occurs during the interphase cycle - specifically regarding chromosomes and centrioles.

A

Occupies 90% of the cell cycle. During this phase, the cell prepares for DNA synthesis, synthesises or replicates DNA resulting in the duplication of chromosomes and begins preparing for mitosis.

During interphase, DNA isn’t folded and individual chromosomes aren’t visible.
Centrioles grow to maturity, RNA and protein for mitosis are synthesised.

55
Q

What is the G0 phase of the cell cycle - what happens within this phase.

In what type of cells does this process happen in.

A

The cell cycle is temporarily suspended in resting cells. These cells remain in G0 but can re-enter the cell cycle to start to divide again. The cell cycle is permanently suspended in non-dividing differentiated cells such as cardiac muscle cells.

56
Q

What are the different phases of Mitosis, list them.

A

Prophase, Metaphase, Anaphase, Telophase and Interphase

57
Q

Describe in detail what happens the mitotic phase: Prophase.

A
  • Pairs of centrioles migrate away from eachother while microtubules appear in between forming a spindle.
  • Microtubules emanating from centrioles give a radiating star-like appearance (called asters). Centrioles form Microtubule organising centres (MTOC).
  • Nuclear chromatin condenses into the visible chromosomes (consist of two sister chromatids - identical). Chromatid consists of complete double stranded DNA helix.
  • Area of constriction where two chromatids are attached in centromere - Kinetochores develop at centromere region and function as MTOC (kinetochores are large protein assemblies that connect chromosomes to microtubules to distribute replicated genome from mother to daughter cell).
  • Nuclear envelope disappears at the end of prophase.
58
Q

Describe in detail what happens the mitotic phase: Metaphase.

A

Centromeres line up along the equatorial plate. At the centromeres are the kinetochores (protein which face the spindle poles (asters)). Microtubules, from the spindle, attach to the kinetochores of each chromosomes.

59
Q

Describe in detail what happens the mitotic phase: Anaphase

A

Sister chromatids are pulled apart such that each migrates to opposite poled being guided by spindle microtubules.

60
Q

Describe in detail what happens the mitotic phase: Telophase

A

New membranes form around daughter nuclei; nucleoli (a spherical structure found in the cell’s nucleus whose primary function is to produce and assemble the cell’s ribosomes) reappear.

Chromosomes uncoil and decondense. Cleavage furrow become deepened facilitating the division of cytoplasm into two new daughter cells - each with nucleus and organelles.

61
Q

Describe in detail what happens the mitotic phase: Interphase

A

Cytokinesis (cell separation) occurs. Cell cycle continues with the next interphase.

62
Q

What is the role of cell junctions, where are they found.

Where else may they serve a role?

A

Multicellular organisms (animals) have cell junction or intercellular bridges. They are especially abundant in epithelial tissues and serve as point of contact between cells and/or the extracellular matrix.

Multiprotein complex that comprises cell junctions can also build up the barrier around epithelial cells (paracellular) and control paracellular transport.

63
Q

What molecules are responsible for creating cell junctions? What is their role and what are they four main types?

A

Various cell adhesion molecules (CAMs). They help stick to each other and surroundings.

Four main types: Selectins, Cadherin, integrins and immunoglobulin superfamily.

64
Q

List the three different types of cell junctions

A

Anchoring junctions, communicating junctions, occluding junction

65
Q

What are the different types of anchoring junctions

A
  • Adheres junctions (bands encircling the cell