gene expression Flashcards

1
Q

what is a mutation?

A

a change to the base sequence of DNA that results in an altered polypeptide

A mutation can lead to various effects on protein function, depending on the type and nature of the change.

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2
Q

what is substitution

A

when one base is replaced by another

This can potentially lead to the development of new functions of polypeptides.

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3
Q

what are the types of substitution

A

silent: same amino acid coded for due to degenerate nature of code
missense: different amino acid -> dysfunctional polypeptide
nonsense: stop codon

This can manifest in different forms, such as silent, misense, or nonsense mutations.

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4
Q

what happens when a gene is duplicated

A

two copies of the same gene on the same chromosome -> development of new function of polypeptide

These mutations do not affect the amino acid sequence of the resulting protein.

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5
Q

what is an insertion or deletion mutation?

A

one or more bases added/removed → frameshift

This alters the reading frame of the genetic code, potentially leading to significant changes in the protein.

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6
Q

what is an inversion mutation?

A

sequence of bases reversed

This can disrupt the normal function of genes in the affected region.

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7
Q

what happens when bases are translocated

A

bases separate from DNA sequence and are inserted onto different gene

This can lead to new gene combinations and potentially new functions or diseases.

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8
Q

what are mutagenic agents?

A

increase the risk of mutation development
ie radiation (changes DNA structure)
chemicals (alter bases / incorporate into code)
viruses (inject genetic information into host DNA)

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9
Q

what are the effect of mutations

A

beneficial → provides genetic variation for natural selection (antibiotic resistance in bacteria)
neutral → degenerate nature of code
harmful → genetic disorders (cystic fibrosis) or cancer

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10
Q

What are stem cells?

A

Undifferentiated cells that can divide indefinitely and specialise into any cell

Stem cells have the unique ability to develop into different types of cells in the body.

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11
Q

what does totipotent mean

A

stem cells that can specialise into any body cell, including placental cells

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12
Q

what does pluripotent mean?

A

stem cells that can specialise into any body cell, except placental cells

Pluripotent stem cells are derived from the inner cell mass of the blastocyst.

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13
Q

what does multipotent mean?

A

stem cells that specialise into a limited range of body cells (e.g., bone marrow cells → blood cells)

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14
Q

what does unipotent mean?

A

stem cells that can divide into one body cell type (e.g., heart muscle cells / cardiomyocytes)

Unipotent stem cells have the least differentiation potential.

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15
Q

what are induced pluripotent stem cells?

A

unipotent adult cells that have been genetically reprogrammed to behave like pluripotent embryonic stem cells using specific transcriptional factors

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16
Q

what are the pros and cons of using iPSCs

A

✅ avoid ethical concerns linked to embryo destruction
✅ no risk of rejection if the patient’s own cells are used
✅ can be generated from a variety of adult cell types
❌ risk of mutations leading to cancer
❌ still in early stages of development and research

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17
Q

what are uses of stem cells

A

regenerative medicine and transplants
research and drug development

18
Q

what are ethical concerns behind stem cells

A

destruction of embryos → potential human life
could lead to reproductive cloning
religious and moral views
consent issues

19
Q

what are transcription factors

A

proteins that control gene expression by influencing RNA polymerase activity

20
Q

what is an activator transcription factor

A

bind to promoter region → allow RNA polymerase binding to DNA → stimulates transcription → more mRNA → more protein production

21
Q

what is a repressor transcription factor

A

bind to operator region → prevent RNA polymerase attachment to DNA → decrease or inhibit transcription → less or no protein production

22
Q

what is oestrogen and how does it function

A

a lipid soluble steroid hormone that diffuses from the bloodstream into the cell

binds to an oestrogen receptor (transcription factor) → changes its shape → forms oestrogen receptor complex
inhibitor molecule released → transcription factor binding site exposed
binds to promoter region → allows RNA polymerase attachment → initiates transcription

23
Q

what is RNA interference?

A

post-transcriptional gene regulation mechanism that prevents specific gene expression before translation

RNA interference involves mechanisms like small interfering RNA (siRNA) and micro RNA (miRNA) to control gene expression.

24
Q

what does small interfering RNA (siRNA) do?

A

silences specific genes by breaking down mRNA before translation

siRNA is double-stranded and targets specific mRNA to prevent protein production.

25
describe the mechanism of siRNA
1. double-stranded siRNA produced 2. siRNA becomes single stranded in cytoplasm and targets specific mRNA 3. proteins bound to siRNA cut mRNA, preventing translation 4. protein is not produced ## Footnote This process effectively silences gene expression.
26
what is micro RNA (miRNA)?
Similar to siRNA, regulates multiple genes ## Footnote miRNA can target and regulate the expression of various mRNAs.
27
describe the mechanism of miRNA
1. miRNA binds to proteins in the cytoplasm 2. binds to target mRNA and blocks ribosome 3. mRNA split or translation inhibited ## Footnote This process can result in reduced protein synthesis from multiple genes.
28
define epigenetics?
inheritable change in gene function without changing the base sequence of DNA
29
what is the epigenome
All the chemical tags added to a person's genome by the environment ## Footnote These tags influence gene expression without altering the DNA sequence.
30
what is the effect of methylation of DNA?
represses gene expression ## Footnote Methylation involves adding a methyl group to cytosine bases.
31
what happens in DNA methylation
decreased acetylation of histones → DNA more tightly wrapped around histones → chromatin more condensed → promoter region inaccessible to transcription factors → transcription inhibited ## Footnote This leads to genes being turned off.
32
what is the effect of acetylation of histones?
activates gene expression
33
what happens in histone acetylation
addition of an acetyl group causes DNA to be less tightly wrapped around histones, reducing condensation of chromatin → promoter region more accessible → transcription factors bind to promoter region, initiating transcription → genes on ## Footnote This process results in active gene expression.
34
what is the function of a proto-oncogene?
stimulates cell division ## Footnote Proto-oncogenes are essential for normal cell growth and division.
35
what happens to a proto-oncogene when it is mutated?
becomes a permanently active oncogene ## Footnote This leads to uncontrolled cell division.
36
what is the function of a tumour suppressor gene?
inhibits cell division, repairs faulty DNA, instructs early cell death of faulty genes ## Footnote Tumour suppressor genes play a crucial role in preventing cancer development.
37
what happens when a tumour suppressor gene is mutated?
inactivation -> uncontrollable cell division of faulty genes ## Footnote This can lead to tumorigenesis.
38
what is hypermethylation of a tumour suppressor gene?
DNA more tightly wrapped and chromatin more condensed so nor transcription and translation -> protein doesn't inhibit cell division ## Footnote This results in the inactivation of the gene, preventing transcription and translation.
39
What is hypomethylation of a proto-oncogene?
DNA less tightly wound and chromatin less condensed -> permanent activation (oncogene) continuous transcription and translation -> uncontrollable cell division ## Footnote This results in permanent activation of the gene.
40
how do oestrogen receptor sites affect proto-oncogenes?
switch on genes that stimulate cell division ## Footnote This can lead to the permanent activation of proto-oncogenes into oncogenes.
41
When are proto-oncogenes permanently expressed?
When oestrogen levels are high ## Footnote This can contribute to cancer risk in hormone-sensitive tissues.