Gastroenterology Flashcards
Absorption small bowel
Achalasia
incidence: 1.6/100,000
pathophysiology:
- lack of peristalsis of lower 1/3 oesophagus/relaxation LES
- LES only opens when pressure of accumulated food in oesophagus>LES tone
causes:
- autoimmune, malignancy, Chagas disease (parasites)
clinical:
- dysphagia, reflux, weight loss, nocturnal cough
diagnosis: barium swallow, manometry
management: medications (nitrates/CCB), botox, dilatation, myotomy
Acid/Base diarrhoea
volume: up to 6L loss per day
fluid: electrolyte poor except for HCO3
pathophysiology:
- renin released secondary to hypovolaemia
- increased renal Na absorption and H/K secretion (H>K)
- loss of Na poor fluid with increased Na reabsorption
investigations
- metabolic acidaemia
- hypernatraemia/hyperosmolality
Acid/Base vomiting
electrolytes: high HCl/K
pathophysiology:
- renin, increased NA reabsorption limited by hypokalaemia/alkalaemia
investigations:
- metabolic alkalosis, hypernatraemia, hypokalaemia
Albumin
synthesis: in liver at twice basal rate
half-life: 3 weeks
2/3 stored: extravascular/extracellular
Alkaline Phosphatase (ALP)
production: liver, bile duct, kidney, bone
increase: biliary obstruction, liver disease, bone disease, hyperPTH, adolescence
decrease: hypophosphatasia, anaemia, fulminant Wilson’s disease
Allergic proctocolitis
timing: day 1 to 3 months
symptoms: streaks blood/mucous in stool with occassional diarrhoea
investigations: increased WCC/eosinophils in stool, nodular lymphoid hyperplasia (25%)
cause: hypersensitivity to cow’s milk, less commonly soy sensitivity
treatment: protein hydrolysate formulas (neocate)
prognosis: usually resolves within 1 year
Alpha 1 Antitrypsin deficiency
Defective production alpha 1 antitrypsin
>100 alleles AAT
Deficient: Z allele most common type
SERPINA 1 gene
AAT is an antiprotease: protects against proteases from neutrophils
Excessive abnormal protein destroys cells in lung/liver/skin
Lung: elastase not inhibited, destruction elastin, emphysema
- lung symptoms >20years
Liver: AAT form accumulates in hepatocyte ER causing injury
- presents in childhood: neonatal cholestasus, hepatomegally with increased aminotransferases, liver disease, bleeding
Cirrhosis and liver failure in 15%
Leading cause of liver transplantation in neonates
Investigations: serum level<35% normal
Management:
- IV infusion, transplant
Alanine Transaminase
location: high concentration in liver, small in muscle
- more specific to muscle than AST but longer half life
Antacids
drugs/side effects:
- aluminium hydroxide: constipations, low Ph and seizures
- magnesium hydroxide: diarrhoea, hypotonia, coma
- calcium carbonate: chelate other drugs
Antidiarrheals
Bile acid sequestrants
- drugs: cholestyramine
- use: diarrhoea caused bile excess bile secretion
Bismuth subsalicylate
- drug: peptobismul
Opiod receptor agonists
- drug: loperamide
- mechanism: enteric nerves, epithelial cells, muscles causing decreased GI secretion/absorption
(low CNS penetration)
Antiemetics
drugs:
- serotonin antagonists: ondansetron
- dopamine antagonists: prochlorperazine
mechanism: centrally acting
side effects: constipation
Aspartate Aminotransferase (AST)
High conc in liver, heart, SM, kidney, pancreas, lung, WBC, RBC
Shorter half life
Autoimmune hepatitis
Type 1: classic
- ANA and/or ASMA; ASMA thought to be reflective of more specific anti-actin Ab
- women in all age groups
Type 2:
- Ab to liver/kidney microsomes (ALKM-1) and/or to liver cytosol antigen (ALC-1)
- disease of girls and young women
Symptoms
- asymptomatic to fulminant hepatic failure
- many present with cirrhosis: nausea, abdo pain, itching
- associated arthritis
- associated autoimmune disease
Diagnosis: elevated transaminases>bilirubin/ALP, elevated globulins + IgG (80%)
Histology: chronic necroinflammatory disorder
Management: corticosteroids, azathioprine, 6-MP, transplant
Prognosis: SMA/ANA more severe disease
Biotin
Deficiency: dermatitis, seborrhoea, anorexia
Biliary atresia
1: 10,000
cause: progressive postnatal obliteration of entire extrahepatic biliary tree at or above porta hepatis
symptoms: jaundice, pale stool
Ultrasound: lack of gallbladder, heterogenous large liver
Management: Kasai procedure (hepatoportoenterostomy) less than 8 weeks
- if flow not establishes 1st months: progessive obliteration/cirrhosis
Complications: portal hypertension
Campylobacteriosis
definition: gram negative rod bacteria flagella
source: contaminated food
timing:
- onset diarrhoea 2 to 5 days after infection
- symptoms lasting 8 days
clinical:
- inflammatory bloody diarrhoea, cramps, fever, pain
pathogenesis:
- infect jejunum, ileum, colon
- produce toxin inhibits immune system
- adherence and invasion
- taken up by cytoplasmia vacuole
- assoc guillaine barre syndrome
treatment:
- macrolide (azithromycin)
Campylobacter jejuni
Fimbriae attached and invade intestinal epithelium
Bacterial surface proteins (PEB1, CadF) help to colonize and invade cells
Causes acute mucosal inflammation with edema, cellular infiltration lamina propria, crypt abscess formation
Similiar to salmonella/shigella
Carbohydrate absorption
Carbohydrate digestion
All carbs require hydrolysis to monosaccharides before absorption
Glucose and galactose are transported by Na-dependent active transport
Fructose is transported by Na-independent facilitated diffusion
Caroli disease
1:1000,000
autosomal dominant assoc ARPKD
segmental dilation intrahepatic bile ducts
symptoms: fever, abdominal pain, hepatomegally
Pathophysiology: stagnation of bile, biliary sludge, intraductal lithiasis
Imaging: demonstrates bile duct ectasia
increased risk cholangiocarcinoma
Causes of pancreatic insufficiency
- CF
- Schwachman-Diamond
- Starvation
Celiac disease autoantibodies
Sensitivity/Specificity
Tissue transglutaminase 90-100/95-100
Anti-endomysial Ab 93-100/98-100
Antigliadin Ab Ig A 52-100/72-100
Antigliadin Ab Ig G 83-100/47-94
Cholestasis
Conjugated hyperbilirubinaemia always pathological
- prolonged elevated conj bili>14days and pale stools, dark urine
- term: neonatal hep/biliary atresia (70-80%)
- preterm: TPN/sepsis
Intrahepatic:
- hepatocyte injury: metabolic, viral
- bile duct injury: intrahepatic bile duct paucity
Extrahepatic:
- biliary atresia
- choledochal cyst
Chronic liver failure
symptoms: scleral icterus, palmar erythema, clubbing, wasting, portal HTN, cholestasis, hypotonia
management:
- liver transplant: 86% long term survival
- medications: immunosuppression, antibacterial, antifungal, antiviral, antiHTN, supplements, bile drainage
Chronic pancreatitis
30-40% risk DM
May not have raised enzymes
Causes: obstructive, genetic (cationic trypsinogen gene defect SPINK1)
Clostridium Difficile
Gram positive rod
Toxin A (enterotoxin): act on intestinal mucosa
Toxin B (cytotoxin): increases vasc permeability
- both cause cell death
Increased infection 2nd/3rd generation cephalosporin
Diagnosis C-difficile or toxin in stool
Culture doesn’t differentiate toxin producing from non toxin producing
Sigmoidoscopy: nodules/plaques
Treatment vancomycin or metronidazole
Coeliac disease
1:100 F:M, 2:1. Caucasians mainly.
Usually presents 10-40yr
High risk groups: 10% 1st degree relative risk, T21 (16% affected), T1DM (2-5%), IgA deficiency (10%), Turner’s, William’s, Autoimmune thyroiditis (2-5%)
Genetics:: MHC short arm ch6 – gene cluster of HLA class II. HLA-DQ2 and/or DQ8 found in 99% of ppl w coeliac (40% in the general population)
Pathophysiology: gluten to gliadin, enters cell via injury, deaminated gliadin picked up HLA FQ2 + DQ8, T cell activation, B cell activation, inflammatory cascade, produce antigliadin/endomysium/tTG
Biopsy: villous atrophy
Tx: gluten free diet, resolution of symptoms weeks to months
Colonic duplication
tubular or spherical structures firmly attached to intestine with common blood supply
associations: anomalies of urinary/genital anomaly
presentation: volvulus, intussusception at lead point
symptoms: abdominal pain, mass, GI bleeding
Congenital chloride diarrhoea
genetic: AR mutation SLC26A3
cause: defective chloride/bicarb transport mechanism distal ileum/colon
clinical: severe watery diarrhoea at birth
investigations: hypokalaemia, hypochloremia, alkalosis, stool Cl>Na
management: IVF
Cow’s milk protein allergy
Immune mediated igE or non IgE response
Most common allergy in young child (2% <4yrs)
3rd most common cause of anaphylaxis
Onset days- weeks after introduction cow’s milk
IgE mediated: mild anaphylaxis minutes to 2 hrs
Mixed IgE/nonIgE: atopic eczema, allergic eosinophilic gastroenteritis
NonIgE: delayed >2hrs
GI allergy is NonIgE
Most develop tolerance
Diagnosis: Food challenge or Cow’s mild specific IgE RAST
Treatment: soy formula (10-20% soy allergy also), extensively hydrolysed, AA formula
Crigler-Najjar
Type 1: AR severe
- absent UGT
- jaundice d2-3
- phototherapy for life
Type 2: AD milder
- UGT levels low but detectable
- responds to phenobarbitone
- late onset childhood/adulthood
Crohn’s disease
7/100,000 peak 8-14yrs M:F 1:1
Relapsing remitting
Site: any part GIT
- favors terminal ileum
- 35% involves ileum alone
- 45% involves ileum and colon
- 20% involves colon alone (preference for right side)
- Colonic involvement right-sided*
- Rectosigmoid often spared*
- Upper GIT more commonly involved in kids >adults*
- skip lesions
Histology:
- transmural, non caseating granulomas, goblet cells present, islands normal tissue
Smoking:
- twice as common in smokers
Symptoms: malaise, fever, anorexia, nausea, vomiting, weight loss, bleeding rate exept with colitis
Examination: RIF mass, fever, clubbing, abdo tenderness, anorectal disease, perianal disease (25%), oro-facial granulmoatosis, apthous ulcers
Diagnosis:
- pANCA (20%) – if +ve, more likely to have UC like distribution
- ASCA (40-80%): ASCA assoc with more severe disease, fistulising disease
- Anti-OmpC : potential marker of IBD (50%)
- CBir1 – other antimicrobial antibody
Treatment: steroids, 5-ASA, thiopurines (azathiopurines, 6-MP), infliximab
Cryptosporidiosis
definition: parasitic protozoan cryptosporidium
source: transmitted as microbial cysts via faecal-oral route
timing: may be acute or chronic
- symptoms 5-10 days after infection and last up to 2 weeks
clinical:
- significant watery diarrhoea, fever, abdominal pain, jaundice, reactive arthritis
- can spread to biliary tract causing cholestasis
pathogenesis: (adherence/inflammation)
- parasite attaches duodenal brush border damaging it
- malabsorption and osmotic diarrhoea
- enveloped membrane and become intracellular
- excreted as oocytes
detection: microscopy, staining, Ab detection
Cryptosporidium
- Implicated as cause of persistent diarrhoea in developing world
- Transmission through infected animals; person-person; contaminated water
- Incubation 2-14 days
- Assocated with profuse, watery, nonbloody diarrhoea +/- vomiting, abdo pain, nausea, anorexia, myalgia, weakness, headache, fever
- Malabsorption, weight loss, malnutrition in severe cases
- Usually self limiting in immunocompetent patients, although diarrhoea may persist for several weeks (oocyst shedding may persist many weeks after symptoms resolve)
- Rx: nitazoxanide
Cyclic vomiting
- = at least 5 attacks, or a minimum of 3 attacks in 6 months
- Severe episodes, well between, each episode similar
- Early morning
- Positive FHx of cyclical vomiting OR migraine
- Chronic sinusitis – only infective correlation
- Metabolic
- Consider malrotation
- Rx: anti-migraine
Cystic Fibrosis (gastric issues)
clinical: early abdo/bowel distension, vomiting, rectal mucus plugging
complications: meconium ileus (15%), 50% associated volvulus, jejunoileal atresia, bowel perforation, meconium peritonitis
AXR: distended/thickened loops of intestine
- meconium with swallowed air: ground glass sign
Dermatitis herpetiformis
Most common skin condition associated coeliac disease
Extensor surfaces and trunk
Itchy
Diagnosis Coeliac disease
Biopsy to confirm anyone with positive serology or high risk CD
Dubin Johnson Syndrome
incidence: AR, rare except in sephardic jews
genetics: ABCC2 gene
pathophysiology: increased conjugate bilirubin due to impaired excretion of bilirubin glucuronidase
clinical: mild conjugated hyperbilirubinaemia
Duodenal atresia
epidemiology: 1/10,000, 50% prems, 50% chromosomal abnormalities (33% T21)
cause: failired re-canalisation of duodenal lumen due to persistence of replicating epithelial cells
pathophysiology: thin membrane occluding lumen, fibrous cord between, gap between 2 segments, web
associated: CHD (30%), malrotations (20%), annular pancreas (30%), renal (15%), TOF (10%)
clinical: bilious vomiting w/o distension 1st day life, hx polyhydramnios
AXR: double bubble
treatment: drip and tuck, surgical correction
prognosis: 90% survival
Enterohaemorrhagic ecoli
definition: gram negative rod
source: food (raw beef), milk
timing: onset 1-8 days lasting 5-10 days
clinical: severe bloody diarrhoea, pain, vomiting
- sometime renal failure causing HUS (10%) (<5yrs) in which RBCs destroyed causing anaemia/thrombocytopaenia and kidney failure
pathogenesis:
- strains of ecoli with shigella like toxin
- A/B subunits allow attachment/uptake/apoptosis
diagnosis: Ecoli O157:H7 requires special media to grow
Energy content foods
protein: 4kcal/g (15% intake)
carbohydrate: 4kcal/g (50% intake)
fat: 10kcal/g (30-50% intake)
Enterotoxigenic E.coli
Colonises and adheres to enterocytes small bowel via surface pili
Hypersecretion of fluids/electrolytes
2 toxins: heat labile enterotoxin (LT) or heat stable enterotoxin (similiar structure to cholera toxin)
Enterotoxigenic ecoli
- leading cause of bacterial diarrhoea developed countries
source: water/food contaminated faeces
timing: incubation 1-3 days, duration 3-7 days
clinical: watery diarrhoea, cramps, vomiting, fever
pathogenesis:
- enterotoxins LT/ST presence produces more severe diarrhoea
- B subunit attaches/A enters causing secretion Cl/H2O
diagnosis: stool culture
Eosinophilic oesophagitis
Mixed IgE/nonIgE food protein allergy
Boys>girls, caucasian
Causes: genetic, environment, Tcell
Clinical, dysphagia, abdo pain, vomiting, food impaction, GORD, diarrhoea
Associated atopy
Diagnosis: biopsy (mucosal inflammation, eosinophilic infiltrates/microabscesses/furrowing)
Treatment: elimination diet (milk most common trigger), steroids, topical
Extensively hydrolysed (neocate, MCT peptide)
eg neocate, MCT peptide
- Amino acids, coconut/vegetable oils (combo of MCT>LCT), carb = glucose
- Very high osmolarity
- Indications: SBS, pancreatitis, severe multiple food protein allergy
Extrahepatic Biliary Atresia
1:10,000
inflammation of the bile ducts leading to progressive obliteration of extrahepatic biliary tract
Symptoms: jaundice, hepatosplenomegally, acholic stool
US: absence of gall bladder
Assessment: hepatobiliary scintigraphy
Treatment: Kansai procedure
Familial Adenomatous Polyposis
FAP
genetics: AD variant tumour suppressor gene APC (adenomatous polyposis coli)
incidence: 1/10,000
clinical: multiple colorectal adenomatous polyps (>100)
- GI bleeding, abdominal pain, diarrhoea
diagnosis: suspected if >10 colorectal adenomas and then genetic testing
Fat digestion
dietary fat: triglycerides (3 fatty acid molecules + glycerol backbone)
digestion:
- lipase in stomach emulsifies lipid droplets
- pancreatic lipase/colipase/esterase/phospholipase hydrolyse TG in duodenum to 2 FA + monoglycerides
- products of lipolysis are insoluble (require bile salts)
- bile salts (micelles) solubilise FA by incorporating them into their structure
absorption:
- in cell monoglycerides + FA re-esterified to TG (in phospholipid/cholesterol/protein to form chylomicrons) which go into the lymphatics
- MC TG are water soluble don’t need micelles; they are unchanged FFA in the portal venous system
Folate
(vitamin B9)
source: liver, kidney, yeast, green vegetables, nuts
amount: 50microg/day, lasts 3-4 months
absorption: duodenum/jejunum
decreased absorption: methotrexate, trimethoprim, OCP, phenytoin, phenobarbiton
cells: enters cell via specific receptor
- folic acid to dihydrofolate reductase to tetrahydrofolate FH4
causes of deficiency:
- congenital folate malabsorption (AR, onset 3 months)
- congenital DHF reductase deficiency (onset infancy)
clinical: anaemia, glossitis, jaundice, bleeding, infections, NO NEURO SX
diagnosis: macrocytic anaemia, normal B12, low folate/methylmalonic acid, increased homocysteine
Food Allergy Syndrome
Hereditary fructose intolerance
incidence: rare AR
definition: IEM with absence enzyme aldolase B
clinical: vomiting, hypoglycemia, jaundice, hemorrhage, hepatomegaly, hyperuricemia and potentially kidney failure after introduction of fruit into diet
diagnosis: DNA screening, fructose challenge
treatment: avoid fructose
Gamma-glutamyl Transpeptidase
Biliary tree and hepatocytes
Raised in obstruction (with ALP)
Inducible enzyme
Gastric acid secretion
INCREASE gastric acid secretion:
- Histamine (via H2 receptors)→↑cAMP
- Acetylcholine (via M3 muscarinic receptors)→ ↑ intracellular free Ca2+
- Gastrin (via enterochromaffin-like cells)→ ↑ histamine release
DECREASE acid secretion:
- PGE2 (decreased intracellular Ca+)
- ? sympathetic drive, intestinal peptides eg. CCK, secretin
Gastric rugal hypertrophy
aka Menetrier’s disease
definition: hyperplasia of gastric pits and superficial epithelium causing large mucosal folds of stomach
(Replacement normal gastric glands and parietal cells by hyperplastic mucus secreting cells)
pathophysiology:
- increased permeability results in hypochlorhydria/protein loss
clinical: epigastric pain, vomiting, upper GI bleeding
causes: childhood form associated CMV
Gastrin
Released by G cells in stomach, duodenum, pancreas
Stimulates secretion HCl by parietal cells of the stomach/aids in gastric motility
GERD
GERD is physiological
40% infants vomit once per day
Resolution 50% by 6m, 75% 1yr, 95% 18m
Gastric acidity increased in first 4 months
Cause: transient LES relaxations
Anatomical issues: hiatus hernia, defective crural/diaphragmatic musculature, intermittent intestinal obstruction
Functional: achalasia, increased intrabdominal pressure, theophylline
GI anatomy
- Foregut = from pharynx to upper ½ of duodenum (including liver, gallbladder and pancreas)
- Midgut = distal ½ of duodenum to proximal 2/3 of transverse colon
- Hindgut = distal 1/3 of transverse colon to rectum
GI blood supply