Final (lectures 22-36/cumulative) Flashcards
What is broad spectrum?
Kills many different groups, is indiscriminate
What is narrow spectrum?
Kills a specific group
What Mode of Action targets penicillin-binding proteins, peptidoglycan subunits and peptidoglycan subunits transport?
Inhibiting Cell Wall Biosynthesis
What Mode of Action has a drug class of β-lactams, which includes penicillins, cephalosporins, monobactams, carbapenems, glycopeptides, and bacitracin?
Inhibiting Cell Wall Biosynthesis
What Mode of Action targets 30S ribosomal subunits?
Inhibiting biosynthesis of proteins
What Mode of Action targets 50S ribosomal subunits?
Inhibiting biosynthesis of proteins
Which inhibition of biosynthesis of proteins has a drug class containing aminoglycosides and tetracyclines?
30S ribosomal subunit
Which inhibition of biosynthesis of proteins has a drug class containing macrolides, lincosamides, chloramphenicol, and oxazolidinones?
50S ribosomal subunit
What Mode of Action targets lipopolysaccharide, inner and outer membranes?
Disrupting the membrane
What Mode of Action has a drug class of polymyxin B, colistin, and daptomycin?
Disrupting the membrane
What Mode of Action targets RNA?
Inhibiting nucleic acid synthesis
What Mode of Action targets DNA?
Inhibiting nucleic acid synthesis
Which inhibition of nucleic acid synthesis has a drug class containing rifamycin?
RNA
Which inhibition of nucleic acid synthesis has a drug class containing fluoroquinolones?
DNA
What Mode of Action targets folic acid synthesis enzyme?
Antimetabolites
What Mode of Action targets mycolic acid synthesis enzyme?
Antimetabolites
Which antimetabolite has a drug class containing sulfonamides and trimethoprim?
Folic acid synthesis enzyme
Which antimetabolite has a drug class containing isonicotinic acid hydrazide?
Mycolic acid synthesis enzyme
What Mode of Action targets mycobacterial ATP synthase?
Mycobacterial ATP synthase inhibitor
What Mode of Action has a drug class containing Diarylquinoline?
Mycobacterial ATP synthase inhibitor
? bind to the 50S ribosomal subunit, prevents peptide bond formation, and stops protein synthesis
Chloramphenicol, macrolides, and lincosamides
________ bind to the 30S ribosomal subunit, and impair proofreading resulting in the production of faulty proteins
Aminoglycosides
________ bind to the 30S ribosomal subunits, and block the binding of tRNAs, thereby inhibiting protein synthesis
Tetracyclines
Sulfonamide, a structural analog of PABA, competitively inhibits the synthesis of ?
dihydrofolic acid
Trimethoprim, a structural analog of dihydrofolic acid, competitively inhibits the synthesis of ?
Tetrahydrofolic acid
Which mechanism of action in common antifungal drugs has drug classes including imidazoles, triazoles, and allylamines?
Inhibit ergosterol synthesis
What are the different drugs under Imidazoles?
Miconazole, ketoconazole, clotrimazole
What are the clinical uses of imidazoles?
Fungal skin infections and vaginal yeast infections
What is a specific drug of a triazole?
Fluconazole
What are the clinical uses of triazoles?
Systemic yeast infections, oral thrush, and cryptococcal meningitis
What is a drug under the drug class allylamines?
Terbinafine
What are the clinical uses of allylamines?
Dermatophytic skin infections, and infections of fingernails and toenails
Which mechanism of action in common antifungal drugs that has drug classes including polyenes?
Bind ergosterol in the cell membrane and create pores that disrupt the membrane
What is a drug under the drug class polyenes?
Nystatin and amphotericin B
What is the clinical use of nystatin?
Used topically for yeast infections of skin, mouth, and vagina; also used for fungal infections of the intestine
What is the clinical use of amphotericin B?
Variety systemic fungal infections
Which mechanism of action in common antifungal drugs has drug classes including echinocandins?
Inhibit cell wall synthesis
Which mechanism of action in common antifungal drugs has drugs including caspofugin and nikkomycin Z?
Inhibit cell wall synthesis
What is a specific drug from the drug class echinocandins?
Caspofugin
What is the clinical use of caspofugin?
Aspergillosis and systemic yeast infections
What is the clinical use of nikkomycin Z?
Valley Fever and yeast infections
Which mechanism of action in common antifungal drugs has drug including griseofulvin?
Inhibiting microtubules and cell division
What is the clinical use of griseofulvin?
Dermatophytic skin infections
Which mechanism of action in common antiviral drugs that has drugs including acyclovir, AZT, ribavirin, vidarabine, sofosbuvir?
Nucleoside analog inhibition of nucleic acid synthesis
What is the clinical use of acyclovir?
Herpes virus infections
What is the clinical use of AZT?
HIV infections
What is the clinical use of ribavirin?
Hepatitis C virus and respiratory syncytial virus infections
What is the clinical use of vidarabine?
Herpes virus infections
What is the clinical use of sofosbuvir?
Hepatitis C virus infections
Which mechanism of action in common antiviral drugs that has drugs including etravirine?
Non-nucleoside noncompetitive inhibition
What is the clinical use of etravirine?
HIV infections
Which mechanism of action in common antiviral drugs that has drugs including amantadine and rimantadine?
Inhibit escape of virus from endosomes
What are the clinical uses of amantadine and rimantadine?
Infections with influenze virus
Which mechanism of action in common antiviral drugs that has drugs including olsetamivir, zanamivir, peramivir?
Inhibit neuraminadase
What are the clinical uses of olsetamivir, zanamivir, and peramivir?
Infections with influenza virus
Which mechanism of action in common antiviral drugs that has drugs including pleconaril?
Inhibit viral uncoating
What are the clinical uses of pleconaril?
Serious enterovirus infections
Which mechanism of action in common antiviral drugs that has drugs including ritonavir and simeprevir?
Inhibition of protease
What is the clinical use of ritonavir?
HIV infections
What is the clinical use for simeprevir?
Hepatitis C virus infections
Which mechanism of action in common antiviral drugs that has drugs including raltegravir?
Inhibition of integrase
What is the clinical use of raltegreavir?
HIV infections
Which mechanism of action in common antiviral drugs that has drugs including enfuviritide?
Inhibition of membrane fusion
What is the clinical use for enfuviritide?
HIV infections
What is immunology?
the study of the immune system and
immunity
What are the 2 branches of immunity?
- Innate immunity
- Adaptive immunity
What is Innate immunity?
multifaceted system of defenses targeting
invading pathogens in a nonspecific manner.
What is Adaptive immunity?
Multifaceted system of defenses that
specifically targets invading pathogens and that develop
memory to the invading pathogens
______ immunity is non-inducible, non-specific, gives a quick response, with no previous exposure required, physical + chemical barriers, phagocytes, and inflammation
Innate
______ immunity is activated when the other fails, specific recognition of pathogens, slow process, develop memory, T-cell, and B-cells with antibodies
Adaptive
In innate immunity there are many physical barriers:
? deny entry, ? remove potential threats, and the _____
cellular barriers, mechanical defenses, microbiome
In innate immunity, what are the 5 chemical barriers?
Body fluids, antimicrobial components, complement systems, cytokines, mediators of inflammation
In innate immunity, the complement system has _____ _____ that have sequential interaction, enzymes, and the ? that all boost innate and adaptive responses
Plasma proteins, membrane attach complex (MAC)
______ are the molecular messenger of the immune system
Cytokines
______ binds to receptors, signaling cascade leading to transcription activator
Ctyokines
_____ are a sub-class of cytokines that recruit circulating immune cells to site of injury
Chemokines
_____ is the same cell secretes and receives cytokine signal
Autocrine
______: cytokine signal is secreted to a nearby cell
Paracrine
_______: cytokine signal secreted to the circulatory system; travels to distant cells
Endocrine
______ are a sub-class of cytokines that activate anti-viral response of nearby cells
Interferons
What are the 2 main systems of the immune system?
Blood and lymphatic
_____ dumps antibodies and immune cells into the blood, while the _____ allows circulation and distribution of immune cells
Lymph, blood
What are the 3 secondary lymphoid organs?
Lymph nodes, mucosa-associated lymphoid tissue (MALT), spleen
_______ to detect antigens or pathogens circulating in the lymphatic system
Leukocytes
Derived from pluripotent hematopoietic stem cells (HSCs) are 3 main cells in the immune system: ?
Erythrocytes (Red blood cells)
Leukocytes (White blood cells)
Platelets
______ are immature, but become mature and differentiate; while _____ have granules that can be stained, contain toxins and enzymes and can destroy their targets
Monocytes, granulocytes
What are the 3 main granulocytes?
Basophil, neutrophil, and eosinophil
What are the 2 differentiated cells of monocytes?
Macrophages and dendritic cells
? : antigenic-presenting cells (APCs) residing in the skin and mucous membranes
Dendric cells
? : APC residing in the tissues and organs (spleen, lymph nodes and MALT) and are the link to adaptive immunity
Macrophages
? : elimination and destruction of extracellular bacteria, are the blood and bone marrow
Neutrophils
? : protection against protozoa and helminths and role in allergies
Eosinophils
? : role in inflammation and allergic reactions; found in the blood
Basophils
? : role in inflammation and allergic reactions; found in tissues
Mast cells
? : kill virus-infected cells and cancerous cells
Natural killer cells
Tissue damage will activate tissue _______ (macrophages), which will release the _____ and _____. This then recruits _______ and ______. Neutrophils enter tissues by
sticking to capillary wall (_______), rolling and squeezing in the cellular junctions (_______)
phagocytes, cytokines, chemokines, Neutrophil, T-cells, margination, diapedesis
What are Pathogen-associated Molecular Pattern (PAMS)?
Unique microbe structures
What are Pattern Recognition Receptors (PRRs)?
Toll-like receptors (TLRs)
NOD-like receptors (NDRs)
Uptake of extracellular pathogen is done by a _______, and the purpose is to ______
Phagosome, destroy
Membrane-bound inclusions are called ______, which contain ______ substances, reactive _____ species, enzymes like lysozymes, proteases, etc
lysosomes, bactericidal, oxygen
When lysosomes fuse with phagosome it is called a ________
phagolysosome
What is inflammation?
Normal biological response to physical injury, toxins, and pathogens
Inflammation is characterized by ?
Redness, swelling, pain, and heat
What is the scientific name for redness caused from inflammation?
Erythema
What is the scientific name for swelling caused from inflammation?
Edema
Inflammation can be ____or _____, ____ or _____, and its promote healing
localized, systemic, acute, chronic
What is acute inflammation?
Production of activators and pro-inflammatory molecules, and has an influx of phagocytes
What is a fever?
Non-localized inflammatory
_____ will induce a fever and are considered endogenous pyrogens, while ____ will also induce fever and are considered exogenous pyrogens
Cytokines, LPS
What are exogenous pyrogens?
Substances which originate inside the body and which are capable of inducing fever
What are endogenous pyrogens?
Substances which originate inside the body and which are capable of inducing fever
Exogenous and endogenous pyrogens act on ________, which act on the _______
prostaglandins, hypothalamus
What is the main purpose of fever?
Limit growth of pathogens
What is the official name for uncontrolled inflammation?
Toxic/septic shock
What are the 3 main aspects of adaptive immunity?
Discriminate: distinguishing between specific foreign molecules
Diversify: recognize many possible foreign molecules
Memorize: remember foreign molecules after 1st expose
What are the 2 components of adaptive immunity?
- Humoral immunity
- Cell-mediated immunity
What is humoral immunity?
Antibodies produced by B-cells in response to antigens
What are B-cells?
Bone marrow lymphocytes
What is cell-mediated immunity?
Activation of T-cells to control intracellular microbes
What are T-cells?
Thymus lymphocytes
An _____ is a molecule/substance that interacts with antibodies or T Cell Receptor (TCR). Not all antigen induce an immune response
antigen
An _______ induces an immune response, used in conjugate vaccines
Immunogen
A _______ is a small molecules that binds to an antibody, does not induce an immune response, it needs a ______ to be an immunogen
Hapten, carrier
Immunogenicity is dependent on: ?
Complexity
Physical form and structural form
Dose
What are epitopes?
Sections or specific regions of an antigen that are recognized
Antibodies are also known as ______. They are considered ______ and are found in blood and tissue fluids. They are ______, and have __ protein chains held by disulfide bonds. It is __-shaped, with __ heavy chains + __ light chain. They also have 2 fragments: ? and ?
Immunoglobulin, glycoproteins, Monomers, 4, Y, 2, 2, fragment of antigen binding (Fab), fragment of crystallization (Fc)
What is the Fragment of antigen binding (Fab region)?
Variable: diversity and specificity
Provide function
What is the Fragment of crystallization (Fc region)?
Binds to complement and phagocyte
What are the 5 functions of antibodies?
- Opsonization
- Neutralization
- Agglutination
- Immune activation
- Cell mediated cytotoxicity
What are the 5 immunoglobin classes?
- IgA
- IgD
- IgE
- IgG
- IgM
What is the function, properties, and distribution of immunoglobin class IgA?
Function: neutralization
Properties: major secretory antibody
Distribution: dimer in secretions, monomer in blood
What is the function, properties, and distribution of immunoglobin class IgD?
Function: B-cell receptor
Properties: activate B-cells
Distribution: B-cell
What is the function, properties, and distribution of immunoglobin class IgE?
Function: Fc bind and activate mast cells and basophils
Properties: parasite immunity
Distribution: blood and lymph
What is the function, properties, and distribution of immunoglobin class IgG?
Function: neutralization, agglutination, complement activation, opsonization, cell-mediated cytotoxicity
Properties: major circulating antibody, Fc binds phagocytes, crosses placenta
Distribution: blood, lymph, and extracellular fluid
What is the function, properties, and distribution of immunoglobin class IgM?
Function: neutralization, agglutination, complement activation
Properties: first antibody to appear
Distribution: blood and lymph
What is the Major Histocompatibility Complex (MHC)?
Important for antigen presentation, Dimers, 2 classes: MHC I and MHC II
What is MHC I?
Found on all nucleated cells, present self antigens, present non-self antigens
What is MHC II?
Found on macrophages, dentritic cells and B cells, present non-self antigens
Each T Cell Receptor (TCR) binds a different _____, selection occurs in ______, and failure can lead to ________
antigen, thymus, autoimmunity
______ selection: TCR with weak interaction divide and grow. No interaction is death
Positive
_____ selection: TCR with strong interaction die
Negative
What are the 3 classes of T-cells?
- Helper (Th)
- Regulatory (Treg)
- Cytotoxic
What is the activation of Helper T-cells?
APC with antigen + MHC II
What is the activation of Regulatory T-cells?
APC with antigen + MHC II
What is the activation of Cytotoxic T-cells?
APC or infected cell with antigen + MHC I
What are the 4 subclasses of Helper T cells?
- Th1
- Th2
- Th17
- Memory
What is the function and outcome of Th1 helper t-cells?
Function: Activation of cytotoxic T-cells, neutrophile, NK and macrophage
Outcome: Cell-mediated immunity
What is the function and outcome of Th2 helper t-cells?
Function: Activation of B-cells
Outcome: antibody-mediated immunity
What is the function and outcome of Th17 helper t-cells?
Function: Activation and recruitment of neutrophils
Outcome: Amplification of innate immunity
What is the function and outcome of Memory helper t-cells?
Function: Remember specific pathogen
Outcome: Strong secondary response
What is the function and outcome of regulatory t-cells?
Function: Tolerance and prevention of autoimmune response
Outcome: Control of Th immunity
What is the function and outcome of cytotoxic t-cells?
Function: Destroy cells with intracellular pathogen
Outcome: Cell-mediated immunity
What is the surface CD of helper T cells and regulatory T cells?
CD4
What is the surface CD of cytotoxic T cells?
CD8
___ binds MHC II, ____ binds MHC I
CD4, CD8
B Cell Receptor (BCR) recognize __ antigen. Diversity is achieved by different process – ______, ________. Selection occurs in ?
1, recombination, hypermutation, bone marrow
B-cell stimulation where it is t-cell _______, there is proliferation and differentiation into plasma cells. T-cell _____ are stronger and induce memory, and have the internalization of antigen.
independent, dependent
_____ produced during the secondary response are more effective and bind with higher affinity; while ? produced during secondary responses live longer and levels of antibody remain elevated for longer
Antibodies, plasma cells
What was Edward Jenner’s contribution?
Pioneered the concept of vaccines and created the smallpox vaccine, the world’s first vaccine
What is passive, naturally acquired immunity?
Immunity acquired from antibodies passed in breast milk or through placenta
What is passive, artificially acquired immunity?
Immunity gained through antibodies harvesting from another person or animal
What is active, naturally acquired immunity?
Immunity gained through illness and recovery
What is active, artificially acquired immunity?
Immunity acquired through a vaccine
Vaccines leverage _____ immunity
adaptive
What is herd immunity?
Occurs when a sufficient percentage of a population has become immune to an infection, whether through previous infections or vaccination
Vaccines can ?, ?, and ?
Prevent infections, limit infections, limit severe effects
What is a Live Attenuated vaccine, and what are the pros and cons?
Description: Non-pathogenic viable microbe
Pros: Mimic a “real” infection; Balanced immunity
Cons: Not safe for immunocompromised; Risk of reversion
What is a Whole Inactivated vaccine, and what are the pros and cons?
Description: Pathogen is dead
Pros: Entire microbe without risk of infection
Cons: Weaker immunity; Stronger dose + booster
What is a Sub-Units vaccine, and what are the pros and cons?
Description: Immunogenic piece(s) of microbe
Pros: Limited side effects
Cons: Booster needed; Limited longevity
What is a Sub-Unit toxoid vaccine, and what are the pros and cons?
Description: Inactivated toxin
Pros: Antibodies neutralize toxin
Cons: Does not prevent infection
What is a Sub-Unit conjugated vaccine, and what are the pros and cons?
Description: Low immunogenic antigen attached to an immunogen
Pros: Effective in younger kids
Cons: Costly; Interfere with other vaccines
What is a Sub-Unit viral-like particle vaccine, and what are the pros and cons?
Description: Proteins that assemble as a capsid
Pros: Mimic the virus
Cons: Low immunogenicity (adjuvant)
What is a Viral Vector vaccine, and what are the pros and cons?
Description: A virus expressing an antigen
Pros: Mimic natural infection
Cons: Risk of genomic integration; Natural immunity to vector
What is a RNA vaccine, and what are the pros and cons?
Description: RNA strand that can be translated
Pros: Highly adaptable; Strong cell-mediate immunity
Cons: Costly (Storage); Weak humoral immunity
What is a DNA vaccine, and what are the pros and cons?
Description: DNA strand can be transcribed
Pros: Highly adaptable
Cons: Risk of genomic integration
What are the 3 broad categories of disorders and deficiencies of the immune system?
- Hypersensitivity
- Immunodeficiency
- Autoimmunity
What is hypersensitivity?
An over-active and harmful response to foreign antigens
What is Immunodeficiency?
Failure to mount an adequate immune response in the presence of danger
What is Autoimmunity?
Harmful response to “self” antigens
All sites on a human that contain microorganisms are part of a _____
microbiome
What is a microbiome?
A functional collection of different microbes in a particular environmental system
What is microbiota?
Describe all the microbes in a microhabitat
There are ~10^__ microbes in the human
microbiome living in complex communities
13
What is the most common bacteria found on the skin?
Propionibacterium
What is the most common bacteria found in the saliva?
Streptococcus
What is the most common bacteria found in the urogenital tract?
lactobacillus
What is the most common bacteria found in the gastrointestinal tract?
bacteroidetes
Humans are _____ and omnivorous
monogastric
What is the pH in the stomach?
2
Colonization of gut begins at ___
birth
What is the pH in the small intestine?
4-5
What is the pH in the large intestine?
7
Microbial populations in different areas of the GI tract are influenced by ____ and the ?
diet, physical conditions in the area
_______, _________, and _________ are common in the gastric fluid, while ________ and _______ are common in the mucus layer of the stomach
Firmicutes, Bacteroidetes, Actinobacteria, Firmicutes, Proteobacteria
When present, acid-resistant ? causes chronic and acute gastritis and leads to the formation of peptic ulcers which can now be cured with antibiotics
Helicobacter pylori
The _____ is essentially an in vivo fermentation vessel, with the microbiota using nutrients derived from the digestion of food
colon,
Most organisms are restricted to the ____ of the large intestine, while others are in the _______ layers
lumen, mucosal
The vast majority (~98%) of all human gut phylotypes fall into one of three major bacterial phyla: ?
Firmicutes, Bacteroidetes, and Proteobacteria
Individuals may have mostly ________, mostly _______, or a mix of the two. This may regulate metabolism and the host’s propensity for obesity
Firmicutes, Bacteriodetes
? : individuals vary in their gut microbiota, each individual has a relatively stable gut microbiota
Gut Enterotypes
Three basic gut enterotypes: ?
- Bacteroides
- Prevotella
- Ruminococcus
Each basic gut enterotypes ______ and _________ distinct
functionally, phylogenetically
A person’s enterotype influences the response to ? and may contribute to ?
diet and drug therapy, health or disease status
Immune system does not properly develop in the absence of ? Exposure to a ____ of microorganisms soon after birth is essential for developing immune
tolerance of beneficial microorganisms and recognizing pathogens as foreign
microbial stimulation, variety
Obese mice have more ______ and a greater
number of methanogenic ____
Firmicutes, Archaea
Saliva contains antimicrobial _____, but high concentrations of nutrients near surfaces in the mouth promote ?
enzymes, localized microbial growth
Cells form a biofilm called dental plaque, which
has ______ and other fermenting bacteria. S. mutans a major contributor –generates ____ ____. These fermenters produce acid, which wears down the _____ ______. Periodontal disease is thought to contribute to
several systemic conditions, including ______ ______ and _____
Streptococcus, lactic acid, tooth enamel, cardiovascular disease, arthritis
Microbes thrive in the ____ respiratory tract, while the ____ respiratory tract has no normal microbiota in healthy adults
upper, lower
Most are trapped in the mucus of the nasal and oral passages and expelled with ? or swallowed and then ?
nasal secretions, killed in the stomach
Only particles smaller than about 10 millimeter in diameter reach the lungs, most notably certain bacteria and viruses that cause _____.
pneumonia
Altered ___ conditions can cause potential pathogens in the urethra. ? and ? frequently cause urinary tract infections, especially in women
pH, E. coli, P. mirabilis
The vagina of the adult female is weakly _____ and contains significant amounts of _____. Lactobacillus acidophilus, a resident organism in the vagina, ferments the glycogen, producing _____ ____, which maintains a local acidic environment
acidic, glycogen, lactic acid
The most abundant viruses in all body sites are not animal viruses but instead are ______
bacteriophages
Bacteriophages likely play a _______ role in human health, and can be a first line of defense against certain pathogens. This can be considered to have a symbiotic relationship with the human host and provide a form of ?
protective, host-independent immunity
What are pathogens?
Microbial parasites that cause disease or tissue damage in a host
What is pathogenicity?
The ability of a parasite to inflict damage on the host
What is virulence?
The relative ability of a pathogen to cause disease
What is an opportunistic pathogen?
Causes disease only in the absence of normal host resistance
What is an infection?
Situation in which a microorganism is established and growing in a host, whether or not the
host is harmed
What is a disease?
Damage or injury to the host that impairs host function
What is adherence?
The enhanced ability of microbes to attach to host tissues. It is necessary, but not sufficient, to start disease