Final Flashcards
DNA
Master blue print
Never leaves the nucleus
Purpose of Transcription and Translation
DNA directs protein synthesis
DNA -> RNA -> protein
Transcription
Synthesis of mRNA from DNA
Occurs in the nucleus
Only transcribes what we need
Translation
Synthesis of polypeptide/protein by using an mRNA template
Occurs in Ribosome in cytosol
T/T in Prokaryotes
Transcription and translation occur together because there is no nuclear envelope
Different polymerases
T/T in Eukaryotes
Transcription in nucleus
Transcription requires many transcription factors
Pre-mRNA modified before becoming mRNA and moving to translation in cytosol
Allows for regulation
RNA vs. DNA
DNA is a double helix, made of deoxyribose sugar, CGAT
RNA is single stranded, made of ribose sugar, CGAU
RNA Polymerase
Pries helix apart and reads 1 strand, adding nucleotides to RNA (using uracil instead of thymine)
3 Stages of Transcription
Initiation, Elongation, Termination
Initiation - Transcription
Promoters (TATA box and transcription factors) signal initiation of RNA synthesis- tell the polymerase to attach
Transcription Factors
Help eukaryotic RNA polymerase recognize the promoter sequence
Elongation - Transcription
RNA polymerase moves along DNA making RNA strand
Termination (Prokaryotes) - Transcription
terminator sequence-> polymerase detaches
Termination (Eukaryotes) - Transcription
Transcribes polyadenylation sequence
Proteins cut mRNA free
Polymerase falls away from DNA
RNA Processing
Only happens in eukaryote cells
Modifies pre-mRNA after transcription
Splicing occurs
Occurs in nucleus
5’ end gets modified nucleotide cap
3’ end gets poly-A tail - helps to export mRNA to cytosol, protects mRNA from degradation, helps ribosomes attach
RNA Splicing
Removes introns and joins exons
Introns
Non coding
Allow for alternate RNA splicing
Increase the number of different proteins possible
Exons
Expressed
Spliceosomes
snRNP - small nuclear ribonucleoproteins
Recognize splice sites
Ribozymes
Catalytic RNA molecules
Function as enzymes
Can splice RNA
mRNA
Messenger RNA
Carries messages as a series of codons
Codons
Triplet sequence of bases along mRNA
Codes for amino acid or as stop signal
Pairs with anticodon on tRNA
20 amino acids
More than one codon per amino acid
tRNA
Transfer RNA
Shuttle amino acids to building polypeptide
Each tRNA is specific for an amino acid
Anticodon binds to codon
L-shaped
Aminoacyl-tRNA Synthetase
Joins each amino acid to correct tRNA
Binding site specific to amino acid
Ribosomes
Free in cytosol or bound to ER
Synthesis starts on free ribosomes, may move to ER if protein needed for export
Made of proteins and ribosomal RNA(rRNA)
Facilitate coupling of codons with anticodons during protein synthesis
Has three binding sites for tRNA - A P E Reads from A to E A -add P -polypeptide E -exit
Stages of Translation
Initiation, elongation, termination
Initiation - Translation
At start codon
Brings together mRNA, initiator tRNA (with first amino acid met), and two subunits of a ribosome together
Elongation - Translation
Amino acids are added one by one to the polypeptide
Termination - Translation
Ribosome reaches a stop codon on the mRNA
Polyribosome
Many ribosomes can translate one mRNA at once, forming multiple proteins at once
After Translation
Possible Changes to help control function of protein: enzyme may be cleaved (e.g. insulin needs to be activated when needed), sugar or lipids may be attached, removal of lead amino acids
Signal Recognition Particle
Draws proteins to ER for export
Mutations
One wrong nucleotide leads to one wrong amino acid which leads to a dysfunctional protein
Wobble position- 3rd unit in codon results in mismatch of bases
Substituions, insertions, deletions produce nonsense or mutations
Epigenetics
Chemical mechanisms control the expression of genes
Methylation-repressors
Histones- repress larger section
Bacteria
Prokaryote- no nuclear membrane
Bacterial Appendages
Protein surface Structures
Flagella
Pili(short hair like)- attach to tissue
Bacteria Cell Wall
Made of peptidoglycan
Capsule or Glycocalyx
Polysaccarides
For attachment and protection
Inside the Bacteria
Genome (DNA nucleus and plasmids)
Ribosomes
Inclusions (Granules- reserve materials)
Bacteria Shapes
Rods, Spheres, Spirals
Rods
Bacillus
Single or in chains
Spheres
Coccus
Chains(streptococci) or Clusters(staphylococci)
Not usually motile
Spirals
Spirilla
Usually Motile
Gram Negative
Staining- thin wall
Gram Positive
Staining- thick wall
Normal Flora
Natural to the human body
Can synthesize and secrete vitamins (E.g. enteric bacteria makes B12 and K)
Prevents colonization by pathogens - compete for space
Produce substances that harm non-indigineous bacteria
Staphylococcus (transfer from nasal passage to susceptible host)
Streptococcus mutano(tooth decay)
Streptococcus pneumonia (normal in upper respiratory tract, cause pneumonia in lower)
Neisseria Meningitidis
E Coli.
Spirilla
Pathogenic
Transmitted by untreated drinking water and undercooked meat
Causes diarrhea and peptic ulcers
Spirochetes
Treponema Pallidum- agent of sypilis
Borrelia Burgdorferi- causes lyme disease