Final Flashcards
Titin is present in telomeres
False
VAST stands for Vector Alignment Search Tool
True
You need a PDB ID or MMBD ID to search VAST+
True
“VAST neighbors” are non-similar structures
False
VAST+ uses protein sequence similarities to compare the 3D structures
False
VAST+ stands for Vector Alignment Sequence Tool
False
Botulinum Toxin comes from a gram-positive bacteria
True
VAST relates proteins based on geometric and sequence criteria
False
You can filter VAST+ results based on taxonomy
True
RMSD stands for Root Mean Square Deviation
True
Malate Dehydrogenase is an enzyme that catalyzes an irreversible reaction
False
Malate Dehydrogenase is a part of the Krebs Cycle
True
The Rossman fold is not a common super secondary structure
False
Prokaryotic and Eukaryotic cells alike have malate dehydrogenase
True
CD in “CD Search” on the NCBI website stands for Conserved Daltons
False
SASA stands for solvent accessible surface area
True
The primary function of katanin is to cut intermediate filaments
False
iCn3D cannot export models for 3-D printing
False
When identifying amino acids by charge using iCn3D, red is a negative amino acids and blue is a positive amino acid
True
An example of a developmental disorder caused by katanin dysfunction is microcephaly
True
Cytoglobin was discovered in 2001 within hemoglobin cells
False (within hepatic stellate cells)
A protein does not have to fall into one of the specific symmetry operations (cyclic, dihedral, helical, or cubic)
True (a protein can be listed as asymmetric)
There are more local symmetries than global symmetries in the Protein Data Bank
False (there are more global symmetries)
A protein of cyclic symmetry has one axis of rotation
True