Extraction purification Flashcards
the 1st step in DNA isolation
Lysis
Anticoagulant used in Ficoll directed Gradient
Ethylenediaminetetraacetic acid or citrate
solation of peripheral blood mononuclear cells and plasma are obtained by centrifugation and addition by density gradient medium called
Ficoll hypaque
Whole blood mixed with Tris-HCL (pH 8.0), saturated phenol, and water
followed by constant shaking for 4 hours at room temperature.
phenol
Whole blood mixed with Tris, EDTA, sodium dodecyl sulfate, MgCl2, and
proteinase K in presence of high salt for overnight digestion at 37ºC.
proteinase K
is the most commonly used lysing agent
Detergent
also known as zymolase, can be used to lyse fungal cell
walls.
Lyticase
Techniques used for purification DNA
Organic
Inorganic
Spin column
Four Steps in solid phase includes the ff
- Cell lysis
- Nucleic acid absorption
- Washing
- Elution
Mixture of Phenol: Chloroform: Isoamyl alcohol ratio used
to inhibit activity of RNase activity
25:24:1
after centrifugation what layer contains DNA in organic method
Upper
Removal of unbind particles or proteins
Washing
step that uses RNase free water is added for release of nucleic acid from silica membrane
Elution