EXERCISE 9 Flashcards
The collection time is best when the [?] the suspected agent is greatest.
likelihood of recovering
If the patient is for antimicrobial therapy, samples must be collected [?] is administered
before the antimicrobial agent
This is for the recovery of organisms that are usually highly susceptible to antibiotics like:
- beta-hemolytic Streptococcus from a
- Neisseria gonorrhoeae from
- Haemophilus influenzae or Neisseria meningitidis from
- throat swab
- genitourinary samples
- CSF
The administration of antibiotics does not necessarily preclude the recovery of other microorganisms from clinical samples. Therefore, one should always attempt to [?], although the result must be interpreted accordingly or qualified in the written report.
culture
Recovery of suspected agents is also greatest during the [?] phase of the illness. In the case of viral infection, it is best to collect the sample from 2 to 3 days of infection.
acute (early)
In many cases, specimen collection should also be based on the [?] of infectious disease.
history and pathophysiology
In suspected cases of typhoid fever, a [1] is preferred during the first week of infection and [2] during the second and third weeks of infection.
blood sample
urine or feces
The collection site is from an [?] with minimum contamination from adjacent tissues, organs, or secretions.
actual infection site
Specimen containers for microbiologic processing must be [3 answers]. However, for stool samples [2 answers] container is acceptable.
sterile, sealable, and leak-proof
clean, and leakproof
Samples must be transported within sealable, leak proof, plastic bags with a separate section for paperwork; marked with a [?].
biohazard label
Specimen volume should be [?] to perform the microbiologic studies requested
adequate
As a general rule, at least [?] of material should be received for routine bacterial culture, and more is necessary for additional studies.
0.5 ml or 0.5 g
If the sample is insufficient, notify the nurse/ doctor. If possible collect additional samples. If an additional sample is not possible and scientific, ask the doctor to [?] the test.
prioritize
[?] are inferior in the collection of most specimens since it does not provide sufficient quantity, are easily contaminated, and can become dried out, leading to a loss of organisms.
Swabs
Swabs are appropriate when a [?] of sample is not necessary like samples from the oropharyngeal, upper respiratory tract, external ear, eye, and genital tract.
large volume
A swab from wound swab is acceptable only when the organism load is [?]
high
[?] is recommended.
Polyester tipped on a plastic shaft
should be avoided for viral culture (inactivate HSV). It may emit toxic products that may inhibit fastidious bacteria.
calcium alginate
tends to have excessive fatty acid which may be toxic to certain bacteria like Neisseria gonorrhoeae
cotton-tipped swab
is toxic to Chlamydia trachomatis
wooden shaft
Organism recovery from swabs may be enhanced by placing the swab in [?] and vertexing for 20 seconds before inoculation
0.5 to 1.0 mL of saline or tryptic soy broth
use of [?] are encouraged
aspiration needles and catheters
maintain the sample as near its original state as possible with minimum deterioration and to minimize hazards to specimen handlers by using [?] that are confined within proper protective containers
tightly fitting collection devices
[?] between the collection of specimens and inoculation of media to a minimum
reduce the time delay
– material should be inoculated directly onto MAC or GN broth
Shigella species from a patient with bacillary dysentery
- inoculated directly onto CAM or selective media
Neisseria gonorrhoeae from urethral or cervical secretion
- inoculated directly onto fresh Bordet-Gengou agar
Bordetella pertussis from respiratory specimen
are also especially sensitive to ambient condition
Neisseria meningitidis, Haemophilus influenzae, Streptococcus pneumoniae, and anaerobes
Samples must be transported to the laboratory within [?] (ideal) from collection because many microorganisms are susceptible to environmental conditions
30 minutes to 2 hours
• presence of oxygen (O2) -
anaerobes
• changes in temperature
Neisseria meningitides
• changes in pH
Shigella
Small volumes of fluid (<1 ml) or tissue (<1 cm3) should be submitted within [?] to avoid evaporation, drying, and exposure to ambient conditions. A few drops of no bacteriostatic saline may be added for hydration
15 to 30 min
Larger volumes and those specimens in the holding medium may be stored for as long as
24 h
▪ Samples must be placed in a
biohazard bag
transport containers for anaerobic specimen
- Syringe and needle for aspiration
- Tube or vial
- Swab/ plastic jacket system
- Bio-bag or plastic pouch
[?] or liquid specimens can be transported to the laboratory after bubbles are carefully expelled from the syringe and the tip of the needle is inserted into a sterile stopper.
Fresh exudate
Syringe and needle for aspiration procedure is valid only if the specimen can be transported to the laboratory without [?]. This practice is under question because of the chance of HIV transmission from a needlestick injury.
delay
Tube or vial contains semisolid holding medium, an atmosphere of [?], a reducing agent, and [?]indicator to give visual indication of anaerobiosis.
5% CO2; reazurin
The tube is used primarily for the insertion of [?]; the vial is used for inoculation of the [?]
swab specimen; liquid specimen
is fitted with a swab and contain either Cary-Blair, Amies transport, or prereduced (PRAS) medium.
A plastic tube or jacket
The [?] also includes a vial or chamber separated by a membrane that contains chemicals resulting in the generation of CO2 catalysts and desiccants to “scavenger” any reduced O2 that may get into the system.
culturette system
[?] containing a CO2-generating system, palladium catalyst cups, and an anaerobic indicator.
Transport plastic bag
The bag is sufficiently large to enclose an inoculated petri dish containing prereduced media, or a biochemical identification microtube tray such as for performing [?].
Minitek tests
Bag or pouch is sealed after inoculated plates have been inserted and the CO2-generating systems is that the plates can be directly observed through the thin, clear [?] of the bag for visualization of early growth of colonies.
plastic
governed by guidelines
Shipping of infectious material
▪ goal of Shipping of infectious material: safeguard [?] in the transportation industry and the [?]
employees; general public
patient specimens and culture isolates must be [?] before being shipped
triple packaged
the primary [?] that must be watertight
receptacle
the [?] material is placed around the primary receptacle
absorbent
the secondary receptacle is also
watertight
patient specimens and culture isolates must be [?] before being shipped
triple packaged
the primary [?] that must be watertight
receptacle
the [?] material is placed around the primary receptacle
absorbent
the secondary receptacle is also [?]; sealed
watertight
sturdy outer container constructed of
fibreboard
specific instructions must be followed for labeling the container as
“Hazardous Material”
Shipping carton containing dry ice (hazardous material) as a refrigerant for a specimen must be marked [?] and package must allow the escape of carbon dioxide gas to prevent the build-up of pressure that can rupture the container.
“Dry Ice Frozen Medical Specimen”
The dry ice should be placed outside the [?] along with a shock-absorbent material in such a manner that the second container does not become loose inside the outer container as the dry ice sublimates.
secondary container
sputum samples for recovery of mycobacteria and fungi – without further treatment if collected in a
sterile propylene or polyethylene container
maintain appropriate colony count.
Specimen preservatives
maintain accurate urine colony counts
boric acid
essentially a solution of buffers with [3 answers] and growth factors excluded
carbohydrates, peptones, and other nutrients
maintain the [?] of microorganisms present in a specimen without supporting the growth of any other organisms
viability
absorb fatty acids present in the specimen that could kill fastidious organisms such as Neisseria gonorrhoeae or Bordetella pertussis
charcoal
Direct inoculation to culture media at the time of
specimen collection is optimal for the isolation of certain pathogens
(bedside inoculation)
provides semi-solid consistency to prevent oxygenation and spillage
a small amount of agar
recommended as a preservative for specimens suspected of containing mycobacteria (distant transport)
sodium borate solution
transport buffered medium for recovery of viruses
sucrose-phosphate-glutamate
o blood, synovial fluids, and peritoneal fluids into a
blood broth culture
o specimens for N. gonorrhoeae can be
placed directly onto a [?] such as JEMBEC system
commercial transport system
o nasopharyngeal swabs for isolation of Bordetella pertussis onto
selective medium
o eye, especially [?] should be inoculated directly on an appropriate medium
cornea scrapings
used to prevent clotting of specimens such as blood, bone marrow, and synovial fluid because microorganisms will otherwise be bound up in the clot
Anticoagulants
higher concentration destroys Neisseria and other anaerobic bacteria
0.025% (w/v) Sodium polyethanol sulfonate (SPS)
to ensure the ratio of the specimen to SPS it is necessary to have both [?] available
large (adult size) and small (pediatric size) tubes
commonly used in viral culture and isolation of Mycobacterium spp. in the blood; inhibit the growth of gram-positive bacteria and yeast
Heparin
should not be used because efficacy has not been demonstrated for a majority of organisms
Citrate, EDTA (ethylenediaminetetraacetic acid)
Becton, Dickinson and Company yellow tap may contain either
SPS or ACD (trisodium citrate/citric acid/dextrose – not for microbiology use)
Specimen storage is dependent on the
type of transport media (if applicable) and the etiologic agent sought
unpreserved urine &stool, swabs, outer ear, sputum and other respiratory specimens, a specimen for detecting Chlamydia trachomatis or viruses, and foreign devices such as catheters
refrigerate (4ºC)
prevent overgrowth of NF
refrigerate (4ºC)
refrigeration adversely affects the recovery of potential pathogens (anaerobes)
room (ambient) temperature (22 ºC)
other body fluids, blood, inner ear, preserved urine & stool, genital, nasal, nasopharynx, throat, tissue and specimens collected for recovery of Neisseria gonorrhoeae
room (ambient) temperature (22 ºC)
Specimen labeling
▪ labeled at a very least with
o patient’s name, identifying number (hospital number)
o age or birthday
o source (special culture media can be selected if required)
o date and time of collection (ensure that the specimen is processed within an acceptable length of time)
o physician (consultation or early reporting of the result if required)
freezer temperature (either -20ºC or -70ºC)
serum for serologic studies
-20ºC
freezer temperature (either -20ºC or -70ºC)
tissues or specimen for long-term storage (more than 4 days)
-70ºC
enough information should be provided on the specimen label so that the specimen can be matched up with the [?] when it is received in the laboratory
requisition
the order form that is sent to the laboratory along with the specimen
Specimen requisition form
Specimen requisition form should include:
patient’s name, hospital number, age or date of birth, sex, collection date and time, ordering physician, exact nature and source of specimen, diagnosis, immunization history, current antimicrobial therapy
specimens require prompt processing after arrival in the laboratory
Specimen priority
level of specimen prioritization
level 1: critical/invasive
level 2: unpreserved
level 3: quantitation required
level 4: preserved
represent a potentially life-threatening illness and are from an invasive source
level 1: critical/invasive
require immediate processing
level 1: critical/invasive
amniotic fluid, blood, brain, cerebrospinal fluid, heart valves, pericardial fluid
level 1: critical/invasive
unprotected and may quickly degrade or have an overgrowth of contaminating flora
level 2: unpreserved
• provide an optimum growth environment for the fastidious organisms that may be found in the specimen
level 2: unpreserved
• body fluid not listed in level 1, bone, drainage from wound, feces, sputum, tissues
level 2: unpreserved