Exam Revision Flashcards
What is a genome?
A set of chromosomes within a gamete of a species
What does haploid mean?
Cell or organism with a single genome
What does diploid mean?
Cell or organism with paired chromosomes (set from each parent)
What is a genotype?
Sets of alleles present at each locus in the genome
What is allele?
One of several alternate DNA sequences that reside at the same locus on the chromosome and controls the phenotype for a particular trait
What are gametes in plants?
Pollen grains and eggs
What does homozygous mean?
The 2 alleles at a specific genetic locus are identical
What does heterozygous mean?
The 2 alleles at a specific genetic locus are not the same
What are the two sorts of natural reproductive systems in plants?
- Sexual reproduction
- Asexual reproduction
What are the two forms of sexual reproduction in plants?
- Self-pollinating
- Cross-pollinating
What kind of alleles do self-pollinating plants tend to have?
Homozygous
What kind of alleles do cross-pollinating plants tend to have?
Heterozygous
What are monoclinous flowers?
Flowers with both the male and female parts in the one flower. These can be both self-pollinating or cross-pollinating
What are diclinous flowers?
The male and female parts of the plant are in separate flowers
What are the two flower types?
- Monoclinous
- Diclinous
What are diclinous flowers separated into?
- Monoecious
- Dioecious
What does monoecious mean?
The male and female flowers are on the same plant
What does dioecious mean?
The male and female flowers are on different plants
What are the 3 self pollinating mechanisms in plants?
- Plant must be genetically self compatible
- Plant must have certain mechanisms or structures
- Need synchronous production of the male and female gamete
What might stop a plant from being genetically self compatible?
Recognition mechanisms stopping the pollen tat lands on the stigma from going down
Why must plants have certain mechanisms or structures?
To ensure the ovary of the plant will normally be fertilised by its own pollen
Why do plants need synchronous production of male and female gametes?
The pollen must be produced at the same time the egg is produced to ensure fertilisation
What is cleistogamy?
When the stigma remains enclosed by floral parts during anthesis to ensure the pollen lands on the stigma rather than nearby plants
What is the purpose of cross-pollinating mechanisms?
To either minimise the level of inbreeding or to promote outcrossing
What are the two ways to minimise selfing in cross-pollinating plants?
- Monoecism
- Non-Synchronous maturation of anthers and stigmas
What are the __ types of cross-pollinating mechanisms?
- Minimise selfing
- Prevent selfing
- Self-Incompatibility
How is selfing prevented in cross-pollinating plants?
Dioecism
How does dioecism work in cross-pollinating plants?
Prohibits selfing but not brother-sister mating.
How does self-incompatibility work?
The styles on the same plant as the pollen will not let the effect of pollen occur
How does self-incompatibility work?
The styles on the same plant as the pollen will not let the effect of pollen occur
What is self-incompatibility?
A genetic mechanism the stops self fertilisation from occurring to promote diversity and heterogeneity for plant survival
Are self-pollinated or cross-pollinating plants more stable?
Self-pollinated. They do not segregate upon selfing
What determines the breeding method?
The reproductive system of the crop plant
What are the five breeding methods for self-pollinated crops?
- Pedigree Method
- Bulk or Mass selection Method
- Single seed Descent
- Backcrossing
- Hybrids
What are the three breeding methods for cross-pollinating crops?
- Recurrent selection
- Synthesis
- Hybrids
What is the purpose of the pedigree breeding method?
Aiming to incorporate an attribute(s) into a superior to high yielding line/commercial cultivar
What does the pedigree method involve?
- The crossing between two parents of the same species
- Selecting plants from segregating populations of a cross and evaluating the performance of their progeny
- Repeated selection within better progeny
- Continued until F6 or F7 are homozygous lines
Why use the pedigree method?
- Allows the breeder to handle large numbers of recombinants with comparative ease
- Useful for the selection of ‘readily identifiable’ characters in early generations
What is hybrid crossing?
- Crosses between species
- Crosses within a species
Why perform a hybrid cross between species?
To gain access to new sources of genetic variability in ice crosses
Why perform a hybrid cross within species?
- Cross two homozygous lines to create a heterozygous line
- To exploit hybrid vigour, especially for yield
What is the concept of hybrid vigour?
- This can produce better yield depending on the two cultivars used
- The offspring performs better than its parents
What are the disadvantages of hybrids?
They must be brought every season to maintain hybrid vigour
What is wide hybridisation?
- Used particularly for the transfer of disease resistance from closely related species.
- Usually done through backcrossing
What is the purpose of backcrossing?
To limit ultimate genetic contribution of donor parent to the desired gene only
What is backcrossing?
Enables breeders to transfer a desired trait from one variety to another genetically different variety
What is mutation in plants?
Physical (radiation) and chemical (EMS) mutagens used
What can supplementary breeding methods be used for?
To introduce new sources of genetic variability and to overcome species barriers
What are the five supplementary breeding methods?
- Wide hybridisation
- Mutation
- Polyploidy
- Haploidy
- In vitro methods
What is qualitative genetic control of characters?
- Simple genetic control
- Often readily observable characters (disease resistance and plant height)
- High heritability
What is qualitative genetic control of characters?
- More complex genetic control
- Selection is much more difficult
- The environment and genotype contributes to the phenotype
- Lower heritability
What are molecular markers?
A fragment of DNA associated with a certain location within the genome
What are molecular markers used for?
The selection of particular traits without having to wait for maturity in some plants
What is important about environment selection when producing cultivars?
Have to think about where they will be grown and therefore what they will face there
Where do government regulations come into the production of new cultivars?
- Regulations regarding releasing new cultivars
- Requirements for the protection of germ plasm
- Need to be aware of industry requirements
How are individual characters selected for?
- Some characters have a minimum or maximum acceptable value
- Anything above or below, has their line discarded
What does the soil environment consist of?
A dynamic interplay of physical, chemical and biological factors
Does the soil profile buffer change above ground?
Yes
What are the physical properties of soil?
- Particles (clay to gravel)
- Pores
- Temperature
What effect does pore size have?
- Smaller pores make it harder for microbes to extract water
- Can effect microbe movement and diversity
How does temperature effect the soil?
Effects the metabolism and growth of the soil environment
What does the soil nutrient status effect?
- The pathogen and the host
- Can have toxic levels of some elements
How can plants effect the chemical properties of the soil?
Can release chemicals into the soil which can be toxic to pathogens
What are the five biological properties of soil?
- Bacteria
- Actinomycetes
- Fungi
- Nematodes
- Subterranean fauna
What is the soil microbiome?
Where there is a large interplay of bacteria, actinomycetes and fungi in the soil
What is the rhizosphere?
Where plants create a nutrient-rick, root habitat for microbes in which they are greatly affected by
What are the three relationships in the rhizosphere?
- Symbiotic
- Pathogenic
- Commensalism
How do inoculums need to survive?
Between crops
How long can plant pathogens survive in plant debris or soil?
- Days to weeks
- Weeks to months
- Months to several years
- Many years
How is inoculum spread?
- Via oospores
- Soil water
- Contaminated soil on animals/people
- machinery
- Wind
What is fungistasis?
The inability of spores of pathogenic fungi to germinate in the soil
Why does funistasis occur?
A lack of nutrients in the soil and chemical inhibitors in the soil produced by plants and weeds
How can you overcome fungistasis?
In the right conditions, root exudates from an active rhizosphere can overcome the fungistasis and pathogen can recognise there is a host there
How can you control fungistasis?
Rotation of non-host crops to trick the pathogen to become active and let it die
What do soil borne pathogens need in order to infect?
A certain amount of inoculum
What happens to the pathogen with low levels of inoculum?
Infects the plant but so low that when the plant matures, it hasn’t got enough for the pathogen to cause disease
What happens when you have high levels of inoculum in the soil?
Plants will become infected quickly which will impact growth and yield
How would a pathogen escape antagonists to survive in the soil?
- Resistant structures
- Low temperature growth
- Growth in dry soil
How many juvenile stages do nematodes have?
Four
What stage of the nematode life cycle will it create cysts in the roots?
Adult
What are the two types of soil borne parasites?
- Ectoparasites
- Endoparasites
What are ectoparasites?
Parasites that feed from the outside of the root
What is a disadvantage of being an ectoparasite?
They are subject to the extremes of the soil environment, competitors etc.
What is a mobile endoparasite?
A parasite that lives within the plant, moves through the plant tissue and feeds off it
What is an advantage of being an ectoparasite?
They can move from root to root
What are the two forms of endorsement parasites?
- Sedentary
- Mobile
What are endoparasites?
Parasites that enter the root or shoot tissue and feed within the plant
What do endoparasites do to the plant?
- They produce chemicals and cause an imbalance in plant cells to make them divide and cause galls
- Move through the plant tissue and cause damage
What is a sedentary endoparasite?
A parasite that lives within the root, establishes a feeding site and does not move
What are the symptoms of a nematode infection?
- Root knots
- Cysts
- Lesions
What are cysts?
A structure full of eggs that survive for a very long time in the soil
What are nematode lesions?
Red lesions found in the roots
What are root knots?
Like a gall that forms on the roots from large amounts of cell division and enlargement as the nematode feeds
What causes the symptoms on plants from nematodes?
- Stimulants
- Secondary metabolic inhibitors
- Enzymes
What are the four control methods of nematodes?
- Cultural
- Chemical
- Biological
- Physical Resistant
What are the two cultural controls of nematodes?
- Crop rotation
- Organic amendments
What are the three chemical controls of nematodes?
- Fumigants
- Non-volatile nematicides
- Serious health and environmental issues
What are the two biological controls of nematodes?
- Resistant and tolerant varieties
- Antagonistic fungi/bacteria
What are the two physical resistant controls of nematodes?
- Healthy propagating material
- Heat
What are the five characteristics of water moulds?
- Zoospores with two flagella
- Thick-walled oospores at the sexual stage
- Vegetative stage is diploid
- Aseptate mycelium
- Cell walls contain gluten and cellulose
What does pythiaceae cause?
- Damping off
- Root rot
- Soft rot
How do pythiaceae cause damage?
- Sporangium that contain vesicles with zoospores
- Zoospores either inserted into a resting structure or germinate and infect the roots and get into seedlings
What does a pythiaceae infection do?
Kills young seedlings
What is phytophthora blight?
An infection that causes root and crown rot and distinctive black lesions on the stems
What are the consequences of phytophthora blight?
- Root infection leads to leaf wilt
- Leaf lesions occur
- Lesions on fruit containing white sporangia
How can you perform a pathogenicity test in the glasshouse?
Plant a healthy plant into a soil pot with inoculum present
How do you control phytophthora blight?
- Manage the soil moisture
- Crop rotation
- Soil amended with organic matter
- Fungicides
What are downy mildews?
An infection of the leaves and branches with a downy bloom consisting of specialised branched hyphen structures on the surface
What spores do downy mildews produce?
- Asexual, biflagellate zoospores
- Sexual oospores
What does albuginaceae cause?
White rust
What happens to gram negative bacteria after washing with alcohol and counterstained with a contrasting dye
They lose their violet dye
What does Peronosporaceae cause?
Downy mildew
What is white rust of brassica?
Pustules of white powdery sporangia
Where are the zoospores of white rust produced?
In a sporangium
What are the two types of bacteria?
- Gram Positive
- Gram Negative
What are the five identifications of bacteria?
- Shape and size of cell
- Chemical composition of substances in cells
- Biochemical tests
- Pathogenicity on plants
- Serological and DNA methods
How do biochemical tests identify bacteria?
Separates species and subspecies
What happens to gram positive bacteria when washed with alcohol?
Retains the primary violet colour
Hoe do you test plant pathogenicity?
Pathogenicity is tested on various species and varieties of host plants
What are the five infraspecific groups?
- Pathovars
- Races
- Biovars
- Serovars
- Molecular groupings
What are pathovars?
Different reactions to host species
What are races?
Different reactions to host cultivars of a plant. Some pathogens may be more pathogenic on some cultivars than others