Exam 3 Flashcards
What molecules do vesicles carry between compartments?
soluble proteins and membrane proteins
What is vesicle budding driven by?
assembly of a protein coat
What does vesicle docking depend on?
Tethers and SNAREs
Where do transport vesicles carry proteins?
Golgi apparatus
What part of the cell is responsible for lipid production?
smooth ER
True or false, lipid proteins are transported by transport vesicles to the Golgi.
true
What secretes from the Golgi?
hormones
Can the endomembrane system be modified?
yes, depending on the cell type
Transport occurs between compartments in what?
endomembrane system and the plasma membrane
Endocytotic mechanisms are destined for what?
lysosomes
What protein coats vesicles?
Clathrin
What shape do clathrin molecules assemble into?
basket like cages
What do clathrin molecules do?
help shape membranes into vesicles
Formation of baskets on the membrane leads to what?
reformation and internalization
Where does clathrin form baskets?
endocytotic site
Why do vesicles form?
to internalize things outside of the cell
What pinches the vesicle from the membrane?
Dynamin (GTPase)
What does clathrin bind to?
adaptin
The binding of clathrin and adoption do what?
buds the vesicle until its pinched off by Dynamin
The vesicle distorts, doing what?
allows clathrin and adaptin to fall off leaving carboxy terminal domains of receptors
Where is the initial site of adaptin assembly?
carboxy terminal domains of the receptors
What are Tethers and SNAREs?
proteins
What does vesicle docking involve?
membrane proteins, v-snares, and t-snares
Where are V-SNARES?
on vesicles
here are T-SNAREs?
on target membrane
What does the RAB protein bind to?
vesicles containing cargo
What initiates membrane fusion?
t-snare binding to v-snare
What releases vesicle cargo to next compartment?
membrane fusion
RAB binding to a tethering protein pulls what?
v-snares and t-snares
Where are most proteins modified?
in the ER
What controls the size of the ER?
demand for protein folding
Where are proteins further modified and sorted?
Golgi
Secretory proteins are released from the cell by what process?
exocytosis
What event happens before proteins are sent to the Golgi?
glycosylation event
What amino acid are many proteins glycosylated on in the ER?
asparagine
What membrane lipid delivers Oligosaccharide to a protein?
Dolichol
What catalyzes the transfer of oligosaccharides from Dolichol to Asparagine?
the enzyme oligosaccharyl transferase
Where do ER proteins enter the Golgi?
the cis face
Proteins are glycosylated as they travel through what?
Golgi Cisternae
Where do proteins exit the Golgi?
trans face
The Golgi consists of what?
stack of flattened membrane enclosed sacs
What part of the Golgi does most glycosylation happen?
medial cisterna
What element triggers the release of secretory proteins?
Calcium
What are the 2 pathways of exocytosis?
regulated and constitutive
Where do the regulated and constitutive pathways diverge?
trans Golgi network
Is the constitutive pathway regulated?
no
What do secretory vesicles do?
store and release concentrated proteins
What do specialized phagocytic cells ingest?
large particles
Pinocytosis takes up what?
fluid and macromolecules
Receptor-mediated endocytosis provides what into animal cells?
specific route
Where are endocytose macromolecules sorted?
endosomes
Lysosomes are the principle site of what?
intracellular digestion
Is pinocytosis constantly happening?
yes
Is phagocytosis a triggered process?
yes
Is receptor mediated cytosine triggered?
yes
What does phagocytosis do?
completely changes the cell membrane and completely envelopes an invader
What do pseudopods do?
wrap and surround the particle to be digested
In what process does the cell membrane fold and create small pockets and captures the cellular fluid and dissolved substances?
pinocytosis
What are some examples of pinocytosis?
microvilli of the small intestines and ducts of the kidneys
What is a example of receptor mediated endocytosis?
cholesterol internalization from the blood stream
Where does LDL enter the cells?
via receptor-mediated endocytosis
Where can viruses enter cells?
receptor0mediated cytosis
Lysosomes contain a variety of what that are only active under acidic conditions?
hydrolytic enzymes
Do lysosomes originate from the Golgi?
no
Lysosomes are the result of what?
endocytic chamber forming
What pathways do materials destined for degradation follow?
endocytosis, phagocytosis, and autophagy (auto phagocytosis)
Delivery of vesicle to the lysosomes comes from where?
the Golgi
Can cell signals act over a long or short range?
yes
What do all responses depend on?
a signal from the cell
What do receptors trigger in a cell?
molecular switches
What are the purpose of cell-surface receptors?
relay extracellular signals via intracellular signaling pathways
What molecules act as molecular switches?
some intracellular signaling proteins
What do ion-channel-coupled receptors convert?
chemical signals into electrical signals
What is signal transduction?
process where one type of signal is converted into another. example chemical into electrical
What are the 2 mechanisms of extracellular signaling molecules?
bind to cell-surface receptors or bind to intracellular receptors (hydrophobic)
What is Acetylcholine an example of?
a signaling molecule that can induce different responses in different target cells
What cellular signals have multiple different functions?
cell survival, division of cell, different structures and functions of cells, cell death trigger
How do fast extracellular signals act?
through existing protein function
How do slow extracellular signals act?
through changes in transcription or protein synthesis
Describe cell-surface receptors.
on plasma membrane (are membrane proteins)
synthesized on the rough ER
enter vesicle transport to Golgi
goes through glycolysis
alpha helical shape
Signaling molecules eventually interact with what kind of protein?
specific effector proteins
What do altered effector proteins do?
change the behavior of the cell
Signaling molecules can effect final response elements (proteins), this has what sort of effect?
metabolism, shape, genes expression
What is Protein Phosphorylation and GTP binding proteins an example of?
intracellular signaling proteins that can act as molecular switches
Explain protein phosphorylation.
transfers phosphates to initial target, signal is now being transducted. keeps target dephosphorylated
Explain GTP proteins.
when they are in a state v fund to GTP they are off, hydrolysis of GTP turns the signal on (these are 2 different pathways)
What are the 3 main classes of cell-surface receptors?
ion-channel coupled
G protein coupled
enzyme coupled
What is a GCPR?
Guanine Protein Coupled Receptor
What does stimulation of GCPR’s do?
activates G protein subunits
What can the Cyclic AMP Signaling Pathway do?
activate enzymes and turn on genes
What does the Inositol Phospholipid Pathway trigger?
rise in intracellular Ca2+
In a GCPR signaling pathway what dissolved gas is generated to carry a signal to the adjacent cells?
NO (nitrous oxide)
Activation of G protein subunits is also known as what?
G protein coupled signaling
How does GCPR activate G proteins?
by inducing the exchange of GDP for GTP at the alpha subunit
The G protein alpha subunit is switched of by…
hydrolyzing its bound GTP to GDP
Do some G proteins directly regulate ion channels?
yes
What enzyme is Cyclic AMP synthesized by?
Adenylyl Cyclase
What enzyme degrades Cyclic AMP?
Cyclic AMP phosphodiesterase
True or False. Nucleotides can be coenzymes or signaling molecules.
true
Do Cyclic AMP level rise or lower rapidly in response to an extracellular signal?
rise
A rise in intracellular cyclic AMP can activate what?
gene transcription
Epinephrine stimulates the breakdown of what in skeletal muscles?
glycogen
What triggers the release of Ca2+ from internal storage sites into the cytosol?
inositol phospholipid pathway
Elevtaed cytosolic Ca2+ can activate what?
calmodulin dependent pathways
Calmodulin dependent pathways activate via what?
calmodulin dependent kinase (CAM-kinase)
Fertilization of an egg leads to what happening?
results in a wave of calcium along the whole cell
Where is a major calcium storage site?
in the cellular ER
The inositol phospholipid signaling pathway is what kind of signaling cascade?
heterogemeric
What is the result of IP3 being triggered by the GPCR system?
calcium will constantly be dumping out of the ER
What are the first 2 steps in the Inositol Phospholipid pathway?
- ligand binds to GPCR activating G-proteins and activating Phospholipase C
- Phospholipase C activates 2 signaling pathways
What are steps 3 & 4 of the Inositol Phospholipid pathway?
- Phospholipase C dissociates IP3 and Diacyl Glycerol from a membrane bound Inositol phospholipid
- IP3 binds to Ca2+ channels on the ER, this triggers Ca2+ release from the ER
What are steps 5 & 6 of the Inositol Phospholipid pathways?
- elevated cytosolic Ca2+ and released diacyglycerol work together to activate Protein Kinase C (PKC)
- PKC phosphorylates numerous protein targets to generate cell response
What is phospholipase?
hydrolyzed phospholipids
What changes the shape of the calmodulin protein?
calcium binding
How many calciums bind to calmodulin?
4
What is chemotaxis?
movement of cell or molecule with the concentration gradient
The activation of RTK stimulates what?
the assembly of an intracellular signaling complex
Active phosphorylated RTKs provide what for other signaling proteins?
docking sites
What are inactive RTKs?
membrane proteins
What are some examples of signals in a cell?
local, cell cell, ion, long range diffusible, and neurotransmitters
What controls nerve cell production in the fruit fly Drosophila?
notch signaling
What is the signal protein in a Drosophila called? receptor protein?
delta; notch
Are delta and notch proteins transmembrane?
yes
What results in the binding of delta to notch?
proteolysis of the receptor
When delta notch complex is cut off it floats, then what happens?
the GDP system transports it to the nucleus
Does notch serve in binding and transcription factors?
yes
Explain steroid signaling.
small hydrophobic hormones bind to intracellular receptor that act as transcription regulators
What do all steroid hormones have?
cholesterol backbone
Are steroid hormones amphipathic?
yes
What does amphipathic mean?
they can just pass through
Explain the steroid hormone cortisol.
acts by activating a transcription regulator in cytosol
cortisol receptor protein complex moves to the nucleus
it controls gene transcription
Explain signaling integration “crosstalk”.
intracellular signaling proteins serve to integrate multiple external incoming signals